Wall clock time and date at job start Wed Apr 1 2020 04:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47347 * 2 1 4 4 C 1.52993 * 109.47115 * 120.00293 * 2 1 3 5 5 O 1.42901 * 109.47215 * 174.99535 * 4 2 1 6 6 C 1.35705 * 117.00208 * 180.02562 * 5 4 2 7 7 C 1.39000 * 119.91213 * 180.02562 * 6 5 4 8 8 C 1.37703 * 120.08426 * 179.97438 * 7 6 5 9 9 C 1.39725 * 119.91846 * 359.97438 * 8 7 6 10 10 C 1.47605 * 120.09211 * 180.02562 * 9 8 7 11 11 O 1.21576 * 119.99855 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99889 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99820 * 179.97438 * 12 10 9 14 14 H 1.08999 * 115.51641 * 9.41913 * 13 12 10 15 15 C 1.52993 * 117.40442 * 224.06003 * 13 12 10 16 16 H 1.09003 * 119.54473 * 4.09896 * 15 13 12 17 17 C 1.57699 * 116.11194 * 161.62530 * 15 13 12 18 18 N 1.48141 * 104.67474 * 87.30645 * 17 15 13 19 19 C 1.36938 * 127.83862 * 139.77878 * 18 17 15 20 20 H 1.08003 * 119.99555 * 344.35537 * 19 18 17 21 21 C 1.38809 * 119.99983 * 164.35022 * 19 18 17 22 22 N 1.31618 * 120.00350 * 350.57816 * 21 19 18 23 23 Si 1.86804 * 119.99839 * 170.57312 * 21 19 18 24 24 H 1.48500 * 109.46816 * 60.00474 * 23 21 19 25 25 H 1.48496 * 109.47109 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47419 * 300.00391 * 23 21 19 27 27 C 1.48148 * 104.32421 * 319.77441 * 18 17 15 28 28 C 1.53005 * 117.44002 * 154.83528 * 13 12 10 29 29 H 1.08998 * 119.54012 * 355.83489 * 28 13 12 30 30 C 1.39738 * 119.82226 * 0.27218 * 9 8 7 31 31 C 1.37713 * 119.90836 * 359.47035 * 30 9 8 32 32 H 1.08998 * 109.47064 * 300.00244 * 1 2 3 33 33 H 1.09006 * 109.47118 * 59.99307 * 1 2 3 34 34 H 1.08997 * 109.47291 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.47064 * 240.00486 * 2 1 3 36 36 H 1.09003 * 109.46642 * 60.00227 * 3 2 1 37 37 H 1.08993 * 109.47160 * 180.02562 * 3 2 1 38 38 H 1.09000 * 109.47192 * 300.00245 * 3 2 1 39 39 H 1.09006 * 109.46965 * 55.00165 * 4 2 1 40 40 H 1.08998 * 109.47584 * 294.99914 * 4 2 1 41 41 H 1.07997 * 119.95351 * 359.97218 * 7 6 5 42 42 H 1.08010 * 120.03878 * 180.02562 * 8 7 6 43 43 H 0.97001 * 120.00614 * 0.02562 * 12 10 9 44 44 H 1.09004 * 110.91901 * 328.22967 * 17 15 13 45 45 H 1.09000 * 109.83623 * 205.84412 * 17 15 13 46 46 H 0.96999 * 120.00314 * 179.97438 * 22 21 19 47 47 H 1.08991 * 110.41139 * 280.80268 * 27 18 17 48 48 H 1.09004 * 110.50394 * 158.41688 * 27 18 17 49 49 H 1.07998 * 120.04655 * 179.70543 * 30 9 8 50 50 H 1.07998 * 119.94970 * 180.25349 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 3.4642 -0.8239 1.1919 6 6 4.0796 -1.4426 2.2312 7 6 5.4632 -1.5753 2.2379 8 6 6.0914 -2.2020 3.2909 9 6 5.3363 -2.7042 4.3538 10 6 6.0057 -3.3761 5.4848 11 8 7.2158 -3.4935 5.4921 12 7 5.2756 -3.8594 6.5094 13 6 5.9400 -4.5268 7.6316 14 1 7.0274 -4.4528 7.6448 15 6 5.3151 -5.8237 8.1496 16 1 4.4499 -6.2453 7.6379 17 6 6.2517 -6.7455 9.0214 18 7 6.0932 -6.2401 10.4049 19 6 6.0031 -6.9693 11.5605 20 1 5.7928 -8.0277 11.5161 21 6 6.1823 -6.3482 12.7889 22 7 6.6192 -5.1078 12.8417 23 14 5.8030 -7.2728 14.3671 24 1 6.6588 -8.4836 14.4492 25 1 6.0746 -6.3941 15.5330 26 1 4.3736 -7.6754 14.3737 27 6 6.0543 -4.7668 10.2547 28 6 5.2169 -4.5271 8.9800 29 1 4.2786 -3.9827 9.0868 30 6 3.9451 -2.5733 4.3409 31 6 3.3247 -1.9407 3.2867 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 0.5140 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8934 -0.5138 -0.8901 36 1 1.6767 1.9563 0.8901 37 1 3.1300 1.4425 -0.0005 38 1 1.6767 1.9564 -0.8900 39 1 1.6054 -1.7199 1.2950 40 1 1.7517 -0.1585 2.1369 41 1 6.0462 -1.1865 1.4161 42 1 7.1666 -2.3044 3.2956 43 1 4.3101 -3.7661 6.5034 44 1 7.2901 -6.6587 8.7017 45 1 5.9177 -7.7809 8.9544 46 1 6.7440 -4.6736 13.7000 47 1 7.0618 -4.3709 10.1276 48 1 5.5724 -4.3075 11.1179 49 1 3.3575 -2.9644 5.1583 50 1 2.2499 -1.8355 3.2779 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962469158.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:33 Heat of formation + Delta-G solvation = 4.288780 kcal Electronic energy + Delta-G solvation = -28506.879098 eV Core-core repulsion = 24500.955683 eV Total energy + Delta-G solvation = -4005.923415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.76667 -39.77723 -38.45832 -37.45882 -35.68497 -34.51742 -32.77739 -31.40404 -30.71135 -29.86501 -27.71099 -27.22545 -27.00585 -25.64862 -23.81347 -23.09214 -21.69813 -20.68616 -20.54290 -20.18786 -19.29804 -18.73220 -17.58364 -16.89985 -16.78847 -16.49038 -15.86505 -15.26167 -14.96171 -14.77284 -14.65763 -14.59527 -14.28917 -13.86149 -13.74979 -13.54376 -13.22478 -13.11546 -12.87088 -12.74071 -12.67165 -12.60995 -12.21625 -11.78919 -11.65492 -11.52106 -11.46977 -11.44836 -11.12071 -11.05429 -10.98193 -10.81328 -10.36721 -10.20989 -10.17155 -9.88619 -9.72478 -9.41830 -9.21014 -8.74915 -8.61775 -8.27242 -6.87045 -5.79705 -3.14010 0.66510 0.99835 2.67125 2.75364 3.12397 3.39335 3.43546 3.44853 3.63690 4.15011 4.23212 4.35371 4.36977 4.46880 4.48093 4.49038 4.64853 4.76275 4.84885 4.91809 4.98940 5.09573 5.10315 5.18354 5.28607 5.30782 5.36607 5.37513 5.40452 5.51101 5.56223 5.61848 5.68639 5.74401 5.76996 5.79892 5.87094 5.90743 6.06736 6.16591 6.25206 6.32970 6.52397 6.69549 6.82088 6.89536 6.95868 7.35113 7.52986 7.58593 7.71199 8.20278 8.28339 9.10746 9.73623 10.50820 11.34699 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024158 B = 0.001618 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.735797 B =17305.349781 C =17919.781732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.148 4.148 4 C 0.060 3.940 5 O -0.310 6.310 6 C 0.154 3.846 7 C -0.161 4.161 8 C -0.019 4.019 9 C -0.169 4.169 10 C 0.562 3.438 11 O -0.537 6.537 12 N -0.694 5.694 13 C 0.094 3.906 14 H 0.133 0.867 15 C -0.185 4.185 16 H 0.106 0.894 17 C 0.158 3.842 18 N -0.593 5.593 19 C -0.229 4.229 20 H 0.077 0.923 21 C -0.005 4.005 22 N -0.915 5.915 23 Si 0.914 3.086 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.186 3.814 28 C -0.180 4.180 29 H 0.100 0.900 30 C -0.044 4.044 31 C -0.218 4.218 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.396 0.604 44 H 0.031 0.969 45 H 0.050 0.950 46 H 0.255 0.745 47 H 0.027 0.973 48 H 0.090 0.910 49 H 0.129 0.871 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.454 11.680 -26.863 31.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.015 4.015 5 O -0.223 6.223 6 C 0.108 3.892 7 C -0.180 4.180 8 C -0.038 4.038 9 C -0.173 4.173 10 C 0.350 3.650 11 O -0.415 6.415 12 N -0.343 5.343 13 C -0.011 4.011 14 H 0.151 0.849 15 C -0.207 4.207 16 H 0.124 0.876 17 C 0.031 3.969 18 N -0.316 5.316 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.202 4.202 22 N -0.561 5.561 23 Si 0.743 3.257 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.060 3.940 28 C -0.201 4.201 29 H 0.119 0.881 30 C -0.063 4.063 31 C -0.237 4.237 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.155 0.845 42 H 0.162 0.838 43 H 0.231 0.769 44 H 0.049 0.951 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.045 0.955 48 H 0.109 0.891 49 H 0.147 0.853 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.478 11.690 -26.720 31.342 hybrid contribution -1.142 -0.417 0.970 1.556 sum -12.620 11.272 -25.749 30.811 Atomic orbital electron populations 1.21794 0.93652 1.02333 1.02672 1.21134 0.95916 0.97033 0.97259 1.21834 1.01980 0.94872 1.01876 1.23002 0.78320 1.00657 0.99519 1.86021 1.21986 1.72909 1.41362 1.19253 0.92349 0.91090 0.86558 1.20410 0.91289 1.05210 1.01049 1.21110 1.00820 0.91544 0.90282 1.19894 0.93658 1.06261 0.97446 1.18091 0.86894 0.78164 0.81821 1.90780 1.13711 1.57998 1.79023 1.45313 1.10068 1.58369 1.20530 1.21910 0.97391 0.96527 0.85312 0.84944 1.25103 1.02697 0.90822 1.02071 0.87586 1.21695 0.94828 0.94976 0.85421 1.45111 1.84384 1.01559 1.00543 1.18944 1.41793 0.92539 0.82382 0.90565 1.24899 1.00498 0.96989 0.97811 1.69889 1.49569 1.12275 1.24340 0.86185 0.78183 0.78666 0.82624 1.20941 1.21537 1.21112 1.21055 0.95538 0.85399 0.92027 1.24640 1.02096 1.00716 0.92676 0.88147 1.21111 0.93373 0.94735 0.97049 1.21156 1.00348 1.06118 0.96047 0.92223 0.91601 0.92254 0.89992 0.92621 0.91793 0.92399 0.91724 0.91659 0.84480 0.83762 0.76881 0.95109 0.93132 0.93463 0.95537 0.89148 0.85302 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.19 37.16 0.34 -0.17 16 2 C -0.09 -0.45 3.16 -90.62 -0.29 -0.74 16 3 C -0.15 -0.74 9.09 37.16 0.34 -0.40 16 4 C 0.06 0.35 4.11 37.15 0.15 0.50 16 5 O -0.31 -2.60 9.66 -18.82 -0.18 -2.78 16 6 C 0.15 1.41 6.70 -39.02 -0.26 1.15 16 7 C -0.16 -1.53 9.97 -39.49 -0.39 -1.92 16 8 C -0.02 -0.21 9.58 -39.22 -0.38 -0.58 16 9 C -0.17 -2.01 5.87 -104.96 -0.62 -2.62 16 10 C 0.56 8.43 7.76 -12.44 -0.10 8.34 16 11 O -0.54 -10.06 15.90 5.30 0.08 -9.97 16 12 N -0.69 -9.72 5.51 -54.82 -0.30 -10.02 16 13 C 0.09 1.62 5.92 -67.93 -0.40 1.22 16 14 H 0.13 2.60 7.40 -51.93 -0.38 2.21 16 15 C -0.19 -3.32 7.34 -87.38 -0.64 -3.96 16 16 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 17 C 0.16 3.37 7.10 -0.57 0.00 3.37 16 18 N -0.59 -15.27 3.38 -166.73 -0.56 -15.84 16 19 C -0.23 -6.37 10.35 -15.06 -0.16 -6.53 16 20 H 0.08 2.04 7.85 -52.48 -0.41 1.63 16 21 C 0.00 -0.13 5.40 -17.43 -0.09 -0.23 16 22 N -0.91 -26.81 10.88 55.49 0.60 -26.21 16 23 Si 0.91 21.89 29.56 -169.99 -5.03 16.86 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.19 4.49 5.69 -2.41 -0.01 4.48 16 28 C -0.18 -3.41 6.98 -89.22 -0.62 -4.03 16 29 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 30 C -0.04 -0.41 9.53 -39.21 -0.37 -0.78 16 31 C -0.22 -1.83 9.01 -39.49 -0.36 -2.18 16 32 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.39 7.82 -51.93 -0.41 -0.02 16 38 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 40 H 0.07 0.34 7.65 -51.93 -0.40 -0.06 16 41 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.14 1.57 7.64 -52.48 -0.40 1.17 16 43 H 0.40 4.33 6.85 -40.82 -0.28 4.05 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 2.42 6.53 -51.93 -0.34 2.08 16 49 H 0.13 0.93 6.39 -52.49 -0.34 0.59 16 50 H 0.13 0.81 6.28 -52.49 -0.33 0.48 16 LS Contribution 406.99 15.07 6.13 6.13 Total: -1.00 -32.83 406.99 -11.00 -43.84 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.89 Total: 3.08 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -3.86 Total: -5.09 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.26 Total: -52.07 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.10 Total: -12.75 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.83 -11.00 -43.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962469158.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.127 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds