Wall clock time and date at job start Wed Apr 1 2020 02:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32994 * 120.00031 * 2 1 4 4 C 1.50705 * 119.99795 * 179.97438 * 3 2 1 5 5 C 1.47094 * 120.00133 * 359.97438 * 3 2 1 6 6 O 1.21616 * 120.00132 * 351.14017 * 5 3 2 7 7 N 1.34777 * 119.99919 * 171.13709 * 5 3 2 8 8 C 1.47424 * 125.64848 * 187.34176 * 7 5 3 9 9 C 1.54908 * 104.83254 * 155.91748 * 8 7 5 10 10 C 1.55156 * 101.58316 * 37.01266 * 9 8 7 11 11 H 1.09004 * 110.72110 * 83.03458 * 10 9 8 12 12 N 1.46901 * 110.72514 * 206.13612 * 10 9 8 13 13 C 1.46897 * 111.00202 * 204.99813 * 12 10 9 14 14 C 1.50703 * 109.47040 * 179.97438 * 13 12 10 15 15 C 1.38294 * 119.92776 * 89.99761 * 14 13 12 16 16 C 1.38107 * 120.06588 * 179.97438 * 15 14 13 17 17 C 1.38878 * 119.93092 * 0.02562 * 16 15 14 18 18 O 1.35746 * 120.06745 * 179.97438 * 17 16 15 19 19 C 1.34835 * 117.00040 * 5.61043 * 18 17 16 20 20 H 1.07998 * 119.99794 * 354.93255 * 19 18 17 21 21 C 1.38651 * 119.99755 * 174.93903 * 19 18 17 22 22 N 1.31559 * 119.99782 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 120.00317 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47021 * 270.00368 * 23 21 19 25 25 H 1.48498 * 109.46922 * 30.00278 * 23 21 19 26 26 H 1.48498 * 109.47202 * 150.00303 * 23 21 19 27 27 C 1.38881 * 119.85994 * 0.27865 * 17 16 15 28 28 C 1.38099 * 119.93233 * 359.44431 * 27 17 16 29 29 C 1.47016 * 125.65008 * 7.39795 * 7 5 3 30 30 H 1.09007 * 109.47024 * 59.99675 * 1 2 3 31 31 H 1.09001 * 109.47641 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47188 * 300.00462 * 1 2 3 33 33 H 1.08004 * 119.99812 * 179.97438 * 2 1 3 34 34 H 1.08993 * 109.47237 * 263.26534 * 4 3 2 35 35 H 1.09002 * 109.46833 * 23.26844 * 4 3 2 36 36 H 1.09003 * 109.46996 * 143.25955 * 4 3 2 37 37 H 1.08998 * 110.36623 * 37.08080 * 8 7 5 38 38 H 1.09001 * 110.46308 * 274.80715 * 8 7 5 39 39 H 1.08997 * 111.00667 * 278.93587 * 9 8 7 40 40 H 1.09007 * 111.03668 * 155.09890 * 9 8 7 41 41 H 1.00899 * 110.99224 * 328.95052 * 12 10 9 42 42 H 1.09000 * 109.46984 * 59.99556 * 13 12 10 43 43 H 1.08994 * 109.47000 * 299.99662 * 13 12 10 44 44 H 1.07999 * 119.96878 * 0.02562 * 15 14 13 45 45 H 1.08005 * 120.03344 * 180.02562 * 16 15 14 46 46 H 0.97001 * 119.99777 * 179.97438 * 22 21 19 47 47 H 1.08001 * 120.03133 * 179.72326 * 27 17 16 48 48 H 1.07999 * 119.96606 * 180.28202 * 28 27 17 49 49 H 1.09008 * 109.88343 * 61.59296 * 29 7 5 50 50 H 1.09006 * 109.88636 * 300.43029 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6790 1.1517 0.0006 5 6 1.4365 2.4256 -0.0006 6 8 0.2313 2.4320 -0.1633 7 7 2.0983 3.5859 0.1793 8 6 1.4769 4.9114 0.3531 9 6 2.5353 5.7489 1.1135 10 6 3.8543 5.2342 0.4791 11 1 4.0574 5.7494 -0.4598 12 7 4.9776 5.3959 1.4119 13 6 6.2530 5.4895 0.6891 14 6 7.3792 5.6549 1.6767 15 6 8.0165 4.5398 2.1895 16 6 9.0492 4.6880 3.0943 17 6 9.4472 5.9585 3.4896 18 8 10.4616 6.1074 4.3793 19 6 11.1176 4.9900 4.7523 20 1 10.7767 4.0241 4.4102 21 6 12.2297 5.0812 5.5753 22 7 12.8695 3.9909 5.9397 23 14 12.8197 6.7521 6.1667 24 1 13.8007 7.3023 5.1970 25 1 11.6618 7.6752 6.2772 26 1 13.4657 6.6069 7.4959 27 6 8.8009 7.0761 2.9777 28 6 7.7727 6.9214 2.0688 29 6 3.5594 3.7394 0.2334 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.0469 -0.9354 0.0004 34 1 4.0419 1.2724 1.0212 35 1 4.0424 0.2075 -0.4050 36 1 4.0426 1.9751 -0.6142 37 1 0.5640 4.8281 0.9428 38 1 1.2618 5.3615 -0.6161 39 1 2.5070 5.5368 2.1823 40 1 2.4006 6.8140 0.9250 41 1 4.8399 6.1983 2.0079 42 1 6.2286 6.3489 0.0191 43 1 6.4091 4.5805 0.1084 44 1 7.7069 3.5521 1.8814 45 1 9.5469 3.8168 3.4941 46 1 13.6477 4.0547 6.5152 47 1 9.1051 8.0652 3.2866 48 1 7.2728 7.7903 1.6669 49 1 4.0005 3.4251 -0.7126 50 1 3.9650 3.1425 1.0503 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968363677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:46 Heat of formation + Delta-G solvation = -0.692052 kcal Electronic energy + Delta-G solvation = -29092.464284 eV Core-core repulsion = 25086.324884 eV Total energy + Delta-G solvation = -4006.139400 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.62819 -39.29576 -38.36776 -37.01068 -35.33551 -34.91153 -32.47146 -31.91648 -30.49038 -30.28112 -29.25293 -28.11337 -25.97418 -25.27330 -24.17288 -23.50326 -22.14315 -21.37909 -21.05658 -20.36735 -18.92000 -17.93157 -17.32677 -17.04690 -16.72525 -15.53911 -15.31896 -15.04786 -14.98778 -14.83853 -14.37807 -14.25791 -14.05600 -13.85113 -13.81756 -13.65958 -13.38972 -13.25560 -13.16015 -12.81065 -12.64894 -12.60191 -12.37196 -12.26203 -12.22184 -12.04341 -11.86687 -11.80640 -11.30770 -11.18205 -10.93269 -10.77791 -10.73833 -10.71417 -10.18416 -9.82160 -9.43065 -9.42744 -8.91120 -8.73584 -8.59393 -8.30238 -7.37998 -6.45416 -4.12143 1.14535 2.07976 2.11767 2.71912 2.97514 3.19037 3.22728 3.37045 3.91242 4.12190 4.20105 4.22650 4.43361 4.53150 4.60317 4.79750 4.80949 4.86860 4.98428 5.05151 5.07125 5.14239 5.19840 5.26404 5.32361 5.34884 5.42074 5.45240 5.48247 5.58433 5.59907 5.60923 5.66720 5.68688 5.76358 5.79349 5.82858 6.05427 6.09106 6.21830 6.28986 6.30320 6.51630 6.74063 6.84871 6.99620 7.14901 7.24766 7.27239 7.30255 7.56821 7.76201 7.93005 7.99725 8.89675 9.51635 10.62070 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017933 B = 0.001899 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.958580 B =14739.889675 C =15866.645562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.074 4.074 3 C -0.190 4.190 4 C -0.134 4.134 5 C 0.568 3.432 6 O -0.541 6.541 7 N -0.615 5.615 8 C 0.110 3.890 9 C -0.138 4.138 10 C 0.070 3.930 11 H 0.062 0.938 12 N -0.674 5.674 13 C 0.116 3.884 14 C -0.179 4.179 15 C -0.049 4.049 16 C -0.223 4.223 17 C 0.162 3.838 18 O -0.217 6.217 19 C -0.390 4.390 20 H 0.107 0.893 21 C 0.063 3.937 22 N -0.878 5.878 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.260 1.260 26 H -0.282 1.282 27 C -0.194 4.194 28 C -0.070 4.070 29 C 0.102 3.898 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.348 0.652 42 H 0.031 0.969 43 H 0.072 0.928 44 H 0.110 0.890 45 H 0.133 0.867 46 H 0.280 0.720 47 H 0.115 0.885 48 H 0.109 0.891 49 H 0.073 0.927 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.601 -0.906 -13.303 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.093 4.093 3 C -0.193 4.193 4 C -0.190 4.190 5 C 0.360 3.640 6 O -0.420 6.420 7 N -0.349 5.349 8 C -0.013 4.013 9 C -0.176 4.176 10 C -0.041 4.041 11 H 0.080 0.920 12 N -0.307 5.307 13 C -0.012 4.012 14 C -0.180 4.180 15 C -0.068 4.068 16 C -0.242 4.242 17 C 0.109 3.891 18 O -0.122 6.122 19 C -0.465 4.465 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.516 5.516 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.184 1.184 26 H -0.208 1.208 27 C -0.213 4.213 28 C -0.089 4.089 29 C -0.022 4.022 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.168 0.832 42 H 0.049 0.951 43 H 0.091 0.909 44 H 0.128 0.872 45 H 0.150 0.850 46 H 0.090 0.910 47 H 0.134 0.866 48 H 0.127 0.873 49 H 0.091 0.909 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.918 -1.536 -13.030 24.692 hybrid contribution 0.549 1.340 0.018 1.448 sum -20.369 -0.195 -13.013 24.172 Atomic orbital electron populations 1.21021 0.91866 1.01013 1.03996 1.23618 0.97133 0.96671 0.91921 1.21400 0.96653 0.92688 1.08549 1.21420 0.90809 1.03621 1.03120 1.18141 0.86501 0.82991 0.76325 1.90774 1.14348 1.86915 1.50006 1.48309 1.07574 1.06837 1.72181 1.22136 0.96805 0.82303 1.00013 1.23030 0.93623 0.99732 1.01212 1.22607 0.91046 0.94966 0.95478 0.92001 1.60506 1.00519 1.48200 1.21428 1.20717 0.86799 1.00077 0.93583 1.19137 1.00929 0.93286 1.04672 1.20618 0.93994 0.97307 0.94886 1.21293 1.01635 0.97714 1.03545 1.19152 0.88369 0.93239 0.88302 1.83570 1.40847 1.35842 1.51917 1.20771 1.09807 0.85166 1.30765 0.87567 1.24478 0.94856 0.98809 0.95888 1.69646 1.19582 1.27710 1.34642 0.86179 0.79539 0.83101 0.78067 1.19892 1.18381 1.20758 1.20163 1.01012 0.96954 1.03182 1.20473 0.96031 0.95914 0.96481 1.22693 0.80120 0.97297 1.02043 0.89831 0.92942 0.90685 0.85736 0.90583 0.91612 0.89982 0.90339 0.91494 0.89400 0.89758 0.83196 0.95080 0.90944 0.87196 0.84980 0.91013 0.86647 0.87323 0.90920 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 8.46 36.00 0.30 -0.80 16 2 C -0.07 -0.63 9.94 -36.13 -0.36 -0.99 16 3 C -0.19 -1.82 5.99 -102.85 -0.62 -2.44 16 4 C -0.13 -1.03 8.22 36.01 0.30 -0.73 16 5 C 0.57 6.59 7.71 -12.67 -0.10 6.50 16 6 O -0.54 -7.58 13.49 5.26 0.07 -7.50 16 7 N -0.61 -6.06 3.33 -171.91 -0.57 -6.63 16 8 C 0.11 0.93 6.88 -2.53 -0.02 0.91 16 9 C -0.14 -0.96 6.47 -24.58 -0.16 -1.12 16 10 C 0.07 0.55 3.28 -65.87 -0.22 0.33 16 11 H 0.06 0.46 7.82 -51.93 -0.41 0.05 16 12 N -0.67 -6.50 6.31 -106.05 -0.67 -7.17 16 13 C 0.12 1.25 5.67 -4.98 -0.03 1.23 16 14 C -0.18 -2.62 5.40 -104.58 -0.56 -3.18 16 15 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 16 C -0.22 -4.58 9.17 -39.39 -0.36 -4.94 16 17 C 0.16 3.59 6.65 -39.11 -0.26 3.33 16 18 O -0.22 -5.59 8.59 0.05 0.00 -5.59 16 19 C -0.39 -10.76 9.95 30.88 0.31 -10.45 16 20 H 0.11 2.99 5.44 -52.49 -0.29 2.71 16 21 C 0.06 1.74 5.49 -17.52 -0.10 1.65 16 22 N -0.88 -24.98 13.96 55.48 0.77 -24.21 16 23 Si 0.91 21.31 28.62 -169.99 -4.86 16.44 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.19 -3.62 9.99 -39.39 -0.39 -4.02 16 28 C -0.07 -1.07 9.69 -39.61 -0.38 -1.46 16 29 C 0.10 0.86 4.83 -3.06 -0.01 0.84 16 30 H 0.08 0.87 6.99 -51.93 -0.36 0.51 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.78 7.48 -51.93 -0.39 0.39 16 33 H 0.12 0.78 8.00 -52.48 -0.42 0.36 16 34 H 0.08 0.60 7.14 -51.93 -0.37 0.23 16 35 H 0.06 0.43 7.98 -51.93 -0.41 0.01 16 36 H 0.08 0.60 4.49 -51.93 -0.23 0.36 16 37 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 41 H 0.35 3.32 8.42 -39.29 -0.33 2.99 16 42 H 0.03 0.31 8.02 -51.93 -0.42 -0.11 16 43 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.13 2.89 5.64 -52.48 -0.30 2.60 16 46 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 48 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 49 H 0.07 0.55 6.07 -51.92 -0.32 0.24 16 50 H 0.09 0.86 6.08 -51.93 -0.32 0.55 16 LS Contribution 399.91 15.07 6.03 6.03 Total: -1.00 -30.53 399.91 -9.77 -40.29 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -7.49 Total: 4.89 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -3.04 Total: -16.55 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.47 Total: -38.01 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.07 Total: -13.10 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.86 Total: 16.44 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.53 -9.77 -40.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968363677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.601 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds