Wall clock time and date at job start Wed Apr 1 2020 02:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33004 * 119.99980 * 2 1 4 4 C 1.50704 * 119.99622 * 0.28048 * 3 2 1 5 5 C 1.47100 * 119.99913 * 180.27647 * 3 2 1 6 6 O 1.21608 * 119.99894 * 263.22659 * 5 3 2 7 7 N 1.34774 * 119.99726 * 83.23083 * 5 3 2 8 8 C 1.47021 * 125.65156 * 5.12388 * 7 5 3 9 9 C 1.54319 * 107.27239 * 181.02478 * 8 7 5 10 10 C 1.55151 * 102.94525 * 22.19095 * 9 8 7 11 11 H 1.09006 * 111.00645 * 82.56928 * 10 9 8 12 12 N 1.46894 * 111.00879 * 206.38632 * 10 9 8 13 13 C 1.46898 * 111.00436 * 205.00183 * 12 10 9 14 14 C 1.50700 * 109.47345 * 180.02562 * 13 12 10 15 15 C 1.38300 * 119.92852 * 269.72437 * 14 13 12 16 16 C 1.38103 * 120.06655 * 179.72404 * 15 14 13 17 17 C 1.38880 * 119.92978 * 0.54812 * 16 15 14 18 18 O 1.35758 * 120.06873 * 179.74833 * 17 16 15 19 19 C 1.34821 * 116.99881 * 174.02865 * 18 17 16 20 20 H 1.08002 * 120.00336 * 5.09792 * 19 18 17 21 21 C 1.38661 * 119.99943 * 185.09946 * 19 18 17 22 22 N 1.31560 * 119.99704 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00035 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47342 * 59.99270 * 23 21 19 25 25 H 1.48501 * 109.47052 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46732 * 299.99619 * 23 21 19 27 27 C 1.38878 * 119.86259 * 359.72577 * 17 16 15 28 28 C 1.38094 * 119.93139 * 0.02562 * 27 17 16 29 29 C 1.47425 * 125.64811 * 184.81621 * 7 5 3 30 30 H 1.09002 * 109.47590 * 59.71704 * 1 2 3 31 31 H 1.09000 * 109.47498 * 179.72274 * 1 2 3 32 32 H 1.09006 * 109.47138 * 299.72233 * 1 2 3 33 33 H 1.07998 * 120.00185 * 180.28116 * 2 1 3 34 34 H 1.09000 * 109.46999 * 84.75972 * 4 3 2 35 35 H 1.09001 * 109.46760 * 204.75347 * 4 3 2 36 36 H 1.08992 * 109.47054 * 324.74988 * 4 3 2 37 37 H 1.09003 * 109.88270 * 300.43931 * 8 7 5 38 38 H 1.09001 * 109.88498 * 61.60259 * 8 7 5 39 39 H 1.09004 * 110.72018 * 140.55421 * 9 8 7 40 40 H 1.08996 * 110.71959 * 263.64666 * 9 8 7 41 41 H 1.00907 * 110.99874 * 81.04400 * 12 10 9 42 42 H 1.09002 * 109.46998 * 300.00098 * 13 12 10 43 43 H 1.08999 * 109.47452 * 59.99514 * 13 12 10 44 44 H 1.07995 * 119.96447 * 0.02562 * 15 14 13 45 45 H 1.08003 * 120.03539 * 180.27456 * 16 15 14 46 46 H 0.96993 * 119.99815 * 180.02562 * 22 21 19 47 47 H 1.08000 * 120.03612 * 179.97438 * 27 17 16 48 48 H 1.08003 * 119.96649 * 179.97438 * 28 27 17 49 49 H 1.08996 * 110.36846 * 274.75066 * 29 7 5 50 50 H 1.09003 * 110.36491 * 37.06894 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4184 2.4569 0.0064 5 6 3.6430 1.1518 -0.0061 6 8 4.2553 1.2735 1.0374 7 7 4.3119 1.0171 -1.1684 8 6 3.7043 0.9686 -2.5062 9 6 4.8497 0.7808 -3.5232 10 6 5.9835 0.1669 -2.6602 11 1 5.8509 -0.9093 -2.5490 12 7 7.3029 0.4762 -3.2270 13 6 8.2980 -0.5255 -2.8216 14 6 9.6360 -0.1753 -3.4202 15 6 9.9881 -0.6732 -4.6615 16 6 11.2111 -0.3495 -5.2153 17 6 12.0925 0.4676 -4.5193 18 8 13.2976 0.7834 -5.0587 19 6 14.0523 1.6777 -4.3893 20 1 13.7277 2.0458 -3.4273 21 6 15.2455 2.1251 -4.9360 22 7 15.6412 1.6764 -6.1078 23 14 16.2917 3.3637 -4.0082 24 1 16.6899 2.7917 -2.6970 25 1 17.5076 3.6771 -4.8010 26 1 15.5092 4.6067 -3.7889 27 6 11.7382 0.9613 -3.2705 28 6 10.5117 0.6382 -2.7244 29 6 5.7748 0.9001 -1.3091 30 1 -0.3634 0.5182 -0.8874 31 1 -0.3634 -1.0276 -0.0050 32 1 -0.3634 0.5095 0.8925 33 1 2.0470 -0.9353 -0.0046 34 1 1.1598 2.7221 1.0315 35 1 2.0431 3.2393 -0.4247 36 1 0.5075 2.3533 -0.5831 37 1 3.0117 0.1292 -2.5687 38 1 3.1782 1.9016 -2.7085 39 1 4.5530 0.0936 -4.3156 40 1 5.1555 1.7399 -3.9410 41 1 7.5990 1.4054 -2.9680 42 1 8.3788 -0.5382 -1.7347 43 1 7.9880 -1.5091 -3.1743 44 1 9.3039 -1.3117 -5.2004 45 1 11.4838 -0.7350 -6.1866 46 1 16.4760 1.9891 -6.4900 47 1 12.4216 1.5966 -2.7266 48 1 10.2358 1.0215 -1.7531 49 1 6.2335 1.8885 -1.3364 50 1 6.1888 0.3113 -0.4906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968363678.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:51 Heat of formation + Delta-G solvation = -20.766716 kcal Electronic energy + Delta-G solvation = -28558.389218 eV Core-core repulsion = 24551.379315 eV Total energy + Delta-G solvation = -4007.009903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.52252 -39.11425 -38.26096 -36.81049 -36.01823 -34.81168 -32.34535 -31.34667 -30.17469 -29.89167 -29.65727 -28.04211 -26.55000 -25.51679 -24.30292 -23.40986 -21.96906 -21.30205 -20.97381 -20.41210 -18.67970 -17.98916 -17.27668 -17.01939 -16.72380 -16.10391 -15.66874 -15.05186 -14.86141 -14.55217 -14.35024 -14.19189 -14.09050 -13.88512 -13.70351 -13.59428 -13.49631 -13.25624 -13.05242 -12.76878 -12.73098 -12.69368 -12.46867 -12.43942 -12.34885 -11.99749 -11.81141 -11.71316 -11.50481 -11.24567 -11.10530 -10.78801 -10.67799 -10.56835 -10.44014 -10.20797 -9.43512 -9.34842 -9.03894 -8.84517 -8.48705 -8.18006 -7.20111 -6.45836 -4.04795 1.33819 2.21832 2.23709 2.25300 2.66669 3.12825 3.13616 3.16563 3.91369 3.96224 4.11535 4.33790 4.38901 4.51517 4.63069 4.73122 4.75664 4.84776 4.86425 5.01788 5.03518 5.09183 5.18548 5.22047 5.26565 5.28116 5.30165 5.36752 5.39547 5.46501 5.48017 5.50304 5.67992 5.74246 5.76338 5.78507 5.86844 5.89809 5.99422 6.13446 6.20651 6.41731 6.69594 6.87119 6.94578 7.04309 7.11777 7.24005 7.27662 7.39929 7.43912 7.78217 7.82044 7.99012 8.99658 9.69600 10.71996 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023070 B = 0.001645 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.398215 B =17013.649836 C =17691.086463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.117 4.117 3 C -0.163 4.163 4 C -0.105 4.105 5 C 0.570 3.430 6 O -0.536 6.536 7 N -0.611 5.611 8 C 0.102 3.898 9 C -0.121 4.121 10 C 0.077 3.923 11 H 0.092 0.908 12 N -0.668 5.668 13 C 0.117 3.883 14 C -0.188 4.188 15 C -0.051 4.051 16 C -0.195 4.195 17 C 0.156 3.844 18 O -0.177 6.177 19 C -0.393 4.393 20 H 0.091 0.909 21 C 0.040 3.960 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.235 4.235 28 C -0.065 4.065 29 C 0.076 3.924 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.346 0.654 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.271 0.729 47 H 0.126 0.874 48 H 0.103 0.897 49 H 0.071 0.929 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.307 -2.201 7.801 30.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.136 4.136 3 C -0.166 4.166 4 C -0.162 4.162 5 C 0.359 3.641 6 O -0.413 6.413 7 N -0.346 5.346 8 C -0.021 4.021 9 C -0.160 4.160 10 C -0.035 4.035 11 H 0.111 0.889 12 N -0.299 5.299 13 C -0.011 4.011 14 C -0.189 4.189 15 C -0.070 4.070 16 C -0.214 4.214 17 C 0.102 3.898 18 O -0.081 6.081 19 C -0.469 4.469 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.254 4.254 28 C -0.084 4.084 29 C -0.049 4.049 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.131 0.869 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.166 0.834 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.130 0.870 45 H 0.134 0.866 46 H 0.080 0.920 47 H 0.143 0.857 48 H 0.121 0.879 49 H 0.089 0.911 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.797 -2.474 7.450 29.848 hybrid contribution 0.791 0.914 1.446 1.885 sum -28.006 -1.560 8.896 29.426 Atomic orbital electron populations 1.20884 0.91880 1.02876 1.02447 1.23220 0.96621 0.96652 0.97127 1.21347 0.92198 0.97309 1.05738 1.20692 0.99422 0.93246 1.02846 1.18250 0.87668 0.75872 0.82307 1.90837 1.69746 1.49405 1.31305 1.48431 1.07658 1.72337 1.06149 1.22108 0.96690 1.01862 0.81453 1.22664 0.93433 1.02834 0.97025 1.22837 0.90611 0.99598 0.90445 0.88950 1.60665 1.00862 1.06651 1.61705 1.20696 0.89062 0.94935 0.96415 1.19071 0.95918 1.06383 0.97528 1.20458 0.94730 0.97774 0.94023 1.20230 0.94620 1.05257 1.01307 1.19413 0.86252 0.92670 0.91425 1.83977 1.22579 1.54211 1.47285 1.21278 1.02116 1.20366 1.03140 0.89134 1.25286 0.96828 0.98135 0.96204 1.70027 1.22142 1.41626 1.15882 0.85788 0.78912 0.79849 0.78929 1.19519 1.20251 1.19503 1.21117 0.98736 1.07853 0.97691 1.20598 0.93470 0.96304 0.97992 1.23171 0.80866 1.01032 0.99787 0.90846 0.91566 0.91028 0.86881 0.90628 0.91836 0.90668 0.91223 0.91208 0.89467 0.89778 0.83434 0.95173 0.90944 0.87037 0.86557 0.91957 0.85651 0.87910 0.91094 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 8.98 36.00 0.32 -0.18 16 2 C -0.12 -0.77 9.97 -36.13 -0.36 -1.13 16 3 C -0.16 -1.34 4.93 -102.84 -0.51 -1.85 16 4 C -0.11 -0.64 9.46 36.01 0.34 -0.30 16 5 C 0.57 6.58 7.19 -12.67 -0.09 6.49 16 6 O -0.54 -8.52 17.40 5.27 0.09 -8.43 16 7 N -0.61 -5.89 3.32 -171.78 -0.57 -6.46 16 8 C 0.10 0.68 6.47 -3.07 -0.02 0.66 16 9 C -0.12 -0.85 6.64 -24.90 -0.17 -1.02 16 10 C 0.08 0.68 3.39 -65.45 -0.22 0.45 16 11 H 0.09 0.80 7.83 -51.93 -0.41 0.40 16 12 N -0.67 -7.33 6.40 -105.61 -0.68 -8.01 16 13 C 0.12 1.45 5.67 -4.98 -0.03 1.42 16 14 C -0.19 -3.05 5.40 -104.57 -0.56 -3.61 16 15 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 16 C -0.19 -4.07 9.99 -39.39 -0.39 -4.47 16 17 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 18 O -0.18 -5.06 9.76 0.05 0.00 -5.06 16 19 C -0.39 -10.96 9.49 30.89 0.29 -10.67 16 20 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 21 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 22 N -0.86 -25.22 13.67 55.48 0.76 -24.46 16 23 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 C -0.23 -5.04 9.17 -39.40 -0.36 -5.40 16 28 C -0.06 -1.15 9.69 -39.61 -0.38 -1.53 16 29 C 0.08 0.76 6.49 -2.41 -0.02 0.74 16 30 H 0.07 0.22 7.40 -51.93 -0.38 -0.16 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 33 H 0.11 0.77 8.05 -52.49 -0.42 0.34 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 36 H 0.07 0.30 6.69 -51.93 -0.35 -0.05 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.35 3.90 8.18 -39.29 -0.32 3.58 16 42 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 43 H 0.07 0.84 8.03 -51.93 -0.42 0.43 16 44 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 45 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 46 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.13 2.71 5.65 -52.49 -0.30 2.42 16 48 H 0.10 1.57 8.06 -52.48 -0.42 1.14 16 49 H 0.07 0.73 7.76 -51.93 -0.40 0.33 16 50 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 LS Contribution 414.68 15.07 6.25 6.25 Total: -1.00 -33.07 414.68 -9.96 -43.03 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.89 Total: 4.82 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -2.90 Total: -17.17 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: -0.49 Total: -38.93 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.07 -9.96 -43.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968363678.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.264 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds