Wall clock time and date at job start Wed Apr 1 2020 02:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32991 * 120.00157 * 2 1 4 4 C 1.50706 * 119.99542 * 179.97438 * 3 2 1 5 5 C 1.47098 * 120.00056 * 359.97438 * 3 2 1 6 6 O 1.21612 * 120.00097 * 264.11652 * 5 3 2 7 7 N 1.34781 * 120.00005 * 84.11933 * 5 3 2 8 8 C 1.47427 * 125.64412 * 355.20843 * 7 5 3 9 9 C 1.54910 * 104.82900 * 204.09554 * 8 7 5 10 10 C 1.55407 * 101.66421 * 323.07515 * 9 8 7 11 11 H 1.08998 * 110.69667 * 277.04899 * 10 9 8 12 12 N 1.46905 * 110.85117 * 153.70245 * 10 9 8 13 13 C 1.46896 * 111.00064 * 160.08706 * 12 10 9 14 14 C 1.50696 * 109.47010 * 180.02562 * 13 12 10 15 15 C 1.38308 * 119.92895 * 269.72236 * 14 13 12 16 16 C 1.38103 * 120.06629 * 179.72655 * 15 14 13 17 17 C 1.38878 * 119.93072 * 0.57339 * 16 15 14 18 18 O 1.35749 * 120.07011 * 179.68536 * 17 16 15 19 19 C 1.34835 * 117.00142 * 174.29754 * 18 17 16 20 20 H 1.07997 * 119.99883 * 5.07323 * 19 18 17 21 21 C 1.38653 * 119.99599 * 185.07915 * 19 18 17 22 22 N 1.31548 * 120.00352 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99559 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47422 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47171 * 119.99590 * 23 21 19 26 26 H 1.48498 * 109.47138 * 239.99773 * 23 21 19 27 27 C 1.38881 * 119.86276 * 359.70076 * 17 16 15 28 28 C 1.38096 * 119.93099 * 0.02562 * 27 17 16 29 29 C 1.47015 * 125.64960 * 175.17288 * 7 5 3 30 30 H 1.09002 * 109.47356 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46927 * 300.00279 * 1 2 3 32 32 H 1.09006 * 109.47052 * 60.00009 * 1 2 3 33 33 H 1.08004 * 119.99356 * 179.97438 * 2 1 3 34 34 H 1.08999 * 109.47041 * 275.00926 * 4 3 2 35 35 H 1.08997 * 109.47312 * 35.01503 * 4 3 2 36 36 H 1.09001 * 109.46816 * 155.01380 * 4 3 2 37 37 H 1.08998 * 110.37201 * 322.93291 * 8 7 5 38 38 H 1.08999 * 110.36478 * 85.14807 * 8 7 5 39 39 H 1.08991 * 111.00883 * 81.06817 * 9 8 7 40 40 H 1.08999 * 111.00265 * 204.88144 * 9 8 7 41 41 H 1.00902 * 110.99946 * 284.04148 * 12 10 9 42 42 H 1.08999 * 109.46894 * 299.99783 * 13 12 10 43 43 H 1.09002 * 109.47278 * 59.99794 * 13 12 10 44 44 H 1.07994 * 119.96545 * 359.97438 * 15 14 13 45 45 H 1.07997 * 120.03339 * 180.27781 * 16 15 14 46 46 H 0.97004 * 120.00008 * 180.02562 * 22 21 19 47 47 H 1.08002 * 120.03270 * 180.02562 * 27 17 16 48 48 H 1.08002 * 119.97032 * 179.97438 * 28 27 17 49 49 H 1.09001 * 109.88119 * 298.38941 * 29 7 5 50 50 H 1.08997 * 109.88936 * 59.39923 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1516 0.0006 5 6 1.4365 2.4257 -0.0006 6 8 1.2264 3.0060 -1.0484 7 7 0.9956 2.9498 1.1602 8 6 1.0920 2.3082 2.4841 9 6 -0.0412 2.9530 3.3206 10 6 -0.0132 4.4203 2.8094 11 1 0.7560 4.9938 3.3266 12 7 -1.3293 5.0538 2.9661 13 6 -1.2149 6.5181 2.9426 14 6 -2.5817 7.1314 3.1062 15 6 -3.3510 7.4099 1.9911 16 6 -4.6062 7.9667 2.1380 17 6 -5.0910 8.2580 3.4065 18 8 -6.3218 8.8112 3.5538 19 6 -6.7796 8.9594 4.8134 20 1 -6.1418 8.7199 5.6513 21 6 -8.0692 9.4190 5.0326 22 7 -8.8459 9.7111 4.0118 23 14 -8.7032 9.6249 6.7776 24 1 -7.6421 9.2321 7.7395 25 1 -9.0766 11.0442 7.0044 26 1 -9.8950 8.7617 6.9763 27 6 -4.3137 7.9824 4.5239 28 6 -3.0616 7.4203 4.3707 29 6 0.3395 4.2561 1.3161 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.0469 -0.9354 0.0004 34 1 4.0420 1.0620 1.0245 35 1 4.0425 0.3098 -0.5887 36 1 4.0426 2.0829 -0.4336 37 1 0.9347 1.2331 2.3971 38 1 2.0628 2.5135 2.9353 39 1 -1.0012 2.4844 3.1048 40 1 0.1839 2.9048 4.3861 41 1 -1.9728 4.7300 2.2595 42 1 -0.5703 6.8452 3.7584 43 1 -0.7860 6.8339 1.9916 44 1 -2.9714 7.1880 1.0048 45 1 -5.2083 8.1798 1.2672 46 1 -9.7480 10.0330 4.1653 47 1 -4.6881 8.2074 5.5117 48 1 -2.4564 7.2061 5.2393 49 1 1.0178 5.0509 1.0059 50 1 -0.5691 4.2888 0.7148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018697050.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:56 Heat of formation + Delta-G solvation = -20.061005 kcal Electronic energy + Delta-G solvation = -28874.691414 eV Core-core repulsion = 24867.712113 eV Total energy + Delta-G solvation = -4006.979301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.59294 -39.11613 -38.27501 -36.79862 -35.71083 -34.75755 -32.33905 -31.26878 -30.63676 -30.18331 -29.68266 -27.98912 -25.73204 -25.28946 -24.38971 -23.44677 -21.98450 -21.96789 -20.96850 -20.41240 -18.71092 -17.98740 -17.00462 -16.97148 -16.66953 -15.98401 -15.47846 -15.34043 -14.68918 -14.54366 -14.47746 -14.21452 -14.06296 -13.94770 -13.60287 -13.53261 -13.46445 -13.24362 -13.12286 -12.94112 -12.69573 -12.66545 -12.53898 -12.20233 -12.15666 -11.96648 -11.95528 -11.78311 -11.51457 -11.26717 -11.13861 -10.80984 -10.66368 -10.53327 -10.42623 -10.19372 -9.38125 -9.33517 -9.03110 -8.85175 -8.48964 -8.17800 -7.19899 -6.46015 -4.04772 1.33969 2.21109 2.25425 2.28057 2.68826 3.11576 3.13352 3.18914 3.92675 3.96062 4.12991 4.25226 4.37959 4.50004 4.63330 4.76150 4.80393 4.85119 4.97592 4.98898 5.08745 5.08987 5.15991 5.23730 5.25115 5.27162 5.33108 5.36753 5.45844 5.46786 5.47840 5.56927 5.69271 5.71501 5.75893 5.83585 5.86791 5.87953 6.01965 6.13620 6.20657 6.42192 6.68998 6.88353 6.93422 7.07782 7.12804 7.17931 7.32520 7.40413 7.44514 7.80786 7.82081 7.99251 8.99789 9.69864 10.72042 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023897 B = 0.001688 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.422663 B =16579.308731 C =16667.602385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C -0.167 4.167 4 C -0.103 4.103 5 C 0.573 3.427 6 O -0.536 6.536 7 N -0.611 5.611 8 C 0.098 3.902 9 C -0.122 4.122 10 C 0.078 3.922 11 H 0.095 0.905 12 N -0.669 5.669 13 C 0.116 3.884 14 C -0.188 4.188 15 C -0.068 4.068 16 C -0.194 4.194 17 C 0.156 3.844 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.236 4.236 28 C -0.048 4.048 29 C 0.077 3.923 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.346 0.654 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.269 0.731 47 H 0.126 0.874 48 H 0.107 0.893 49 H 0.067 0.933 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.957 -18.332 -1.923 29.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 C -0.170 4.170 4 C -0.160 4.160 5 C 0.361 3.639 6 O -0.413 6.413 7 N -0.345 5.345 8 C -0.025 4.025 9 C -0.160 4.160 10 C -0.034 4.034 11 H 0.113 0.887 12 N -0.300 5.300 13 C -0.011 4.011 14 C -0.189 4.189 15 C -0.087 4.087 16 C -0.213 4.213 17 C 0.102 3.898 18 O -0.081 6.081 19 C -0.467 4.467 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.497 5.497 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.255 4.255 28 C -0.067 4.067 29 C -0.048 4.048 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.165 0.835 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.125 0.875 45 H 0.134 0.866 46 H 0.079 0.921 47 H 0.144 0.856 48 H 0.125 0.875 49 H 0.085 0.915 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.452 -17.881 -2.066 28.777 hybrid contribution -0.169 0.259 -0.066 0.316 sum 22.282 -17.623 -2.132 28.489 Atomic orbital electron populations 1.21024 0.92564 1.03117 1.02852 1.23332 0.96430 0.96773 0.96765 1.21424 0.96951 0.92660 1.05939 1.20647 0.89610 1.03291 1.02427 1.18213 0.78288 0.85022 0.82328 1.90837 1.57617 1.62110 1.30735 1.48440 1.59307 1.19578 1.07188 1.22430 0.99508 0.98119 0.82449 1.22852 0.98542 0.94606 1.00012 1.22724 0.92746 0.95814 0.92093 0.88726 1.60702 1.07701 1.06767 1.54791 1.20685 0.94937 0.85831 0.99692 1.19071 0.97000 1.09335 0.93489 1.20493 0.93367 0.97779 0.97038 1.20175 0.97374 1.08430 0.95315 1.19405 0.86511 0.90502 0.93337 1.83978 1.25977 1.67519 1.30659 1.21385 0.98109 1.45927 0.81327 0.88966 1.25298 0.94939 0.96512 0.99817 1.70047 1.08235 1.41096 1.30330 0.85643 0.79104 0.78335 0.80317 1.19075 1.20154 1.20140 1.21169 0.96203 1.08959 0.99186 1.20564 0.94602 0.95720 0.95791 1.22890 0.98120 0.85044 0.98730 0.91172 0.91078 0.90993 0.85640 0.90923 0.90885 0.91547 0.90295 0.91132 0.89968 0.89196 0.83450 0.90956 0.95130 0.87487 0.86622 0.92063 0.85591 0.87473 0.91495 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.14 36.01 0.33 -0.65 16 2 C -0.11 -0.76 9.49 -36.13 -0.34 -1.10 16 3 C -0.17 -1.38 4.80 -102.85 -0.49 -1.87 16 4 C -0.10 -0.62 10.02 36.01 0.36 -0.26 16 5 C 0.57 6.52 6.05 -12.66 -0.08 6.45 16 6 O -0.54 -8.47 17.44 5.27 0.09 -8.37 16 7 N -0.61 -5.73 3.33 -171.92 -0.57 -6.30 16 8 C 0.10 0.62 6.50 -2.53 -0.02 0.61 16 9 C -0.12 -0.84 6.78 -24.45 -0.17 -1.00 16 10 C 0.08 0.66 3.25 -65.74 -0.21 0.45 16 11 H 0.09 0.75 7.90 -51.93 -0.41 0.34 16 12 N -0.67 -7.34 6.35 -105.92 -0.67 -8.01 16 13 C 0.12 1.43 5.67 -4.98 -0.03 1.41 16 14 C -0.19 -3.05 5.40 -104.57 -0.56 -3.61 16 15 C -0.07 -1.18 9.69 -39.61 -0.38 -1.57 16 16 C -0.19 -4.07 9.99 -39.39 -0.39 -4.46 16 17 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 18 O -0.18 -5.08 9.76 0.04 0.00 -5.08 16 19 C -0.39 -10.91 9.49 30.89 0.29 -10.62 16 20 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 23 Si 0.94 20.46 29.55 -169.99 -5.02 15.44 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 27 C -0.24 -5.07 9.17 -39.40 -0.36 -5.43 16 28 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 29 C 0.08 0.75 6.52 -3.07 -0.02 0.73 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.51 6.92 -51.93 -0.36 0.15 16 32 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 33 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 36 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 37 H 0.08 0.43 6.34 -51.93 -0.33 0.10 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.35 3.97 8.15 -39.29 -0.32 3.65 16 42 H 0.07 0.84 8.03 -51.93 -0.42 0.42 16 43 H 0.03 0.36 8.07 -51.93 -0.42 -0.06 16 44 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 45 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 46 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 48 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.07 0.78 7.57 -51.93 -0.39 0.39 16 LS Contribution 412.69 15.07 6.22 6.22 Total: -1.00 -33.11 412.69 -9.86 -42.97 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -7.84 Total: 5.38 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -2.82 Total: -17.71 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: -0.49 Total: -38.84 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.11 -9.86 -42.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018697050.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.905 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds