Wall clock time and date at job start Wed Apr 1 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47125 * 2 1 4 4 H 1.08993 * 115.55027 * 29.33947 * 3 2 1 5 5 C 1.53003 * 117.51898 * 243.62893 * 3 2 1 6 6 C 1.52998 * 59.99996 * 252.52296 * 5 3 2 7 7 H 1.09000 * 117.49784 * 107.49628 * 6 5 3 8 8 C 1.50700 * 117.49850 * 252.50878 * 6 5 3 9 9 O 1.21280 * 120.00023 * 68.62980 * 8 6 5 10 10 N 1.34774 * 120.00169 * 248.62579 * 8 6 5 11 11 C 1.46504 * 120.00362 * 180.02562 * 10 8 6 12 12 C 1.53933 * 113.73383 * 251.72839 * 11 10 8 13 13 N 1.47959 * 86.18033 * 221.91847 * 12 11 10 14 14 C 1.46902 * 111.00078 * 137.57906 * 13 12 11 15 15 C 1.50702 * 109.46583 * 90.63934 * 14 13 12 16 16 C 1.38300 * 119.93271 * 269.72654 * 15 14 13 17 17 C 1.38097 * 120.06930 * 179.72927 * 16 15 14 18 18 C 1.38889 * 119.93053 * 0.52357 * 17 16 15 19 19 O 1.35751 * 120.06788 * 179.72694 * 18 17 16 20 20 C 1.34836 * 116.99554 * 174.48636 * 19 18 17 21 21 H 1.07997 * 119.99848 * 5.06067 * 20 19 18 22 22 C 1.38644 * 119.99523 * 185.05788 * 20 19 18 23 23 N 1.31562 * 120.00693 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99869 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47649 * 59.99837 * 24 22 20 26 26 H 1.48499 * 109.47562 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47198 * 299.99941 * 24 22 20 28 28 C 1.38876 * 119.85845 * 359.74914 * 18 17 16 29 29 C 1.38095 * 119.93503 * 0.02562 * 28 18 17 30 30 C 1.47968 * 90.76252 * 24.68991 * 13 12 11 31 31 H 1.09002 * 109.47440 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46609 * 299.99771 * 1 2 3 33 33 H 1.08994 * 109.47504 * 59.99151 * 1 2 3 34 34 H 1.09001 * 109.46649 * 240.00620 * 2 1 3 35 35 H 1.08994 * 109.47504 * 120.00849 * 2 1 3 36 36 H 1.09000 * 117.49657 * 145.03012 * 5 3 2 37 37 H 1.09002 * 117.49814 * 0.02562 * 5 3 2 38 38 H 0.97001 * 120.00105 * 359.97438 * 10 8 6 39 39 H 1.09002 * 112.93169 * 23.43117 * 11 10 8 40 40 H 1.09000 * 113.75866 * 336.23586 * 12 11 10 41 41 H 1.08998 * 113.76142 * 107.59963 * 12 11 10 42 42 H 1.08996 * 109.47050 * 210.63832 * 14 13 12 43 43 H 1.08992 * 109.47313 * 330.64283 * 14 13 12 44 44 H 1.08002 * 119.96242 * 359.97438 * 16 15 14 45 45 H 1.07997 * 120.03569 * 180.27152 * 17 16 15 46 46 H 0.96994 * 120.00206 * 180.02562 * 23 22 20 47 47 H 1.07996 * 120.03321 * 180.02562 * 28 18 17 48 48 H 1.08005 * 119.97275 * 180.02562 * 29 28 18 49 49 H 1.08998 * 113.75594 * 220.99359 * 30 13 12 50 50 H 1.08996 * 113.86143 * 89.64220 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1714 0.4818 5 6 2.8439 1.9081 -1.2157 6 6 3.5502 1.6578 0.1182 7 1 4.1804 0.7718 0.1955 8 6 4.0230 2.8616 0.8918 9 8 3.2160 3.6160 1.3924 10 7 5.3425 3.0997 1.0275 11 6 5.8022 4.2697 1.7801 12 6 6.4000 5.3791 0.8962 13 7 7.4436 5.5092 1.9370 14 6 8.7735 5.6640 1.3326 15 6 9.0668 7.1286 1.1324 16 6 8.7158 7.7468 -0.0538 17 6 8.9781 9.0900 -0.2382 18 6 9.6051 9.8177 0.7651 19 8 9.8693 11.1369 0.5847 20 6 10.3746 11.8096 1.6384 21 1 10.6276 11.2810 2.5455 22 6 10.5692 13.1799 1.5572 23 7 10.2604 13.8240 0.4524 24 14 11.2697 14.1118 3.0167 25 1 12.6156 13.5773 3.3458 26 1 11.3786 15.5535 2.6777 27 1 10.3714 13.9458 4.1876 28 6 9.9615 9.1926 1.9529 29 6 9.6922 7.8502 2.1330 30 6 7.2162 4.1119 2.3676 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8898 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8898 36 1 2.7211 2.9434 -1.5337 37 1 3.0092 1.1868 -2.0160 38 1 5.9880 2.4961 0.6276 39 1 5.0657 4.6283 2.4992 40 1 6.7775 5.0218 -0.0619 41 1 5.7616 6.2576 0.8022 42 1 9.5250 5.2297 1.9920 43 1 8.7966 5.1539 0.3697 44 1 8.2323 7.1794 -0.8354 45 1 8.6998 9.5733 -1.1630 46 1 10.3970 14.7826 0.3956 47 1 10.4487 9.7558 2.7350 48 1 9.9687 7.3636 3.0567 49 1 7.2300 3.9780 3.4492 50 1 7.8318 3.3826 1.8411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030980557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:59 Heat of formation + Delta-G solvation = 14.591277 kcal Electronic energy + Delta-G solvation = -28239.592469 eV Core-core repulsion = 24234.115804 eV Total energy + Delta-G solvation = -4005.476665 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.80137 -39.69491 -38.84845 -37.34802 -36.50362 -34.26069 -32.51688 -32.33151 -31.01647 -30.13855 -27.68728 -26.31027 -25.60509 -24.95441 -24.18193 -23.01857 -21.93609 -21.04942 -20.64202 -20.37362 -20.00897 -17.96204 -17.62890 -17.10990 -16.68834 -15.81091 -15.59379 -15.33694 -15.09868 -14.76998 -14.66512 -14.52064 -14.29559 -13.99983 -13.57475 -13.46947 -13.14047 -13.01712 -12.90709 -12.86386 -12.73235 -12.60063 -12.55176 -11.82335 -11.78684 -11.69028 -11.59054 -11.47727 -11.25822 -11.01630 -10.76927 -10.72605 -10.59597 -10.51340 -10.47104 -10.40429 -10.11512 -9.35821 -9.31212 -8.89749 -8.78403 -8.14759 -7.15754 -6.42937 -4.01866 2.16188 2.24484 2.29522 2.74901 3.14545 3.16148 3.18633 3.38929 3.83349 3.98716 4.16119 4.26227 4.30917 4.38300 4.55828 4.66556 4.73094 4.75001 4.88361 4.97783 4.99301 5.02845 5.12817 5.19360 5.22362 5.31061 5.32587 5.35784 5.44575 5.47372 5.54527 5.64273 5.66698 5.70600 5.71198 5.74205 5.82605 5.89808 5.94117 6.16281 6.19494 6.27718 6.46345 6.71671 6.91226 6.94260 7.09272 7.16831 7.26469 7.42340 7.46699 7.85067 7.92185 8.02081 9.02663 9.72791 10.75032 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024483 B = 0.001539 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.365240 B =18189.333939 C =18508.086947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.117 4.117 4 H 0.119 0.881 5 C -0.148 4.148 6 C -0.194 4.194 7 H 0.123 0.877 8 C 0.544 3.456 9 O -0.536 6.536 10 N -0.719 5.719 11 C 0.117 3.883 12 C -0.005 4.005 13 N -0.465 5.465 14 C 0.083 3.917 15 C -0.177 4.177 16 C -0.066 4.066 17 C -0.193 4.193 18 C 0.155 3.845 19 O -0.178 6.178 20 C -0.392 4.392 21 H 0.091 0.909 22 C 0.040 3.960 23 N -0.863 5.863 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.234 4.234 29 C -0.051 4.051 30 C -0.008 4.008 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.400 0.600 39 H 0.124 0.876 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.105 0.895 45 H 0.115 0.885 46 H 0.270 0.730 47 H 0.126 0.874 48 H 0.106 0.894 49 H 0.095 0.905 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.370 -28.807 -1.099 30.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.136 4.136 4 H 0.137 0.863 5 C -0.185 4.185 6 C -0.215 4.215 7 H 0.141 0.859 8 C 0.330 3.670 9 O -0.412 6.412 10 N -0.369 5.369 11 C 0.012 3.988 12 C -0.135 4.135 13 N -0.188 5.188 14 C -0.045 4.045 15 C -0.178 4.178 16 C -0.084 4.084 17 C -0.213 4.213 18 C 0.102 3.898 19 O -0.082 6.082 20 C -0.468 4.468 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.498 5.498 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.254 4.254 29 C -0.070 4.070 30 C -0.138 4.138 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.235 0.765 39 H 0.142 0.858 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.123 0.877 45 H 0.133 0.867 46 H 0.080 0.920 47 H 0.144 0.856 48 H 0.124 0.876 49 H 0.113 0.887 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.975 -27.309 -0.535 29.824 hybrid contribution 1.081 -0.367 -0.047 1.143 sum -10.893 -27.676 -0.582 29.748 Atomic orbital electron populations 1.21745 0.95067 1.01704 1.02277 1.21157 0.96411 0.93534 1.02115 1.22498 0.91203 0.98826 1.01066 0.86336 1.23121 1.01834 1.03360 0.90219 1.22320 0.97960 0.98866 1.02374 0.85950 1.19728 0.82313 0.85399 0.79535 1.90721 1.53865 1.48542 1.48095 1.46002 1.07063 1.28356 1.55517 1.23066 0.95809 0.85324 0.94616 1.24496 0.95012 0.99255 0.94736 1.68651 1.04102 1.20454 1.25551 1.21340 0.90942 0.94693 0.97507 1.18967 1.08326 0.94511 0.96015 1.20423 0.98315 0.93580 0.96129 1.20160 1.07252 0.93981 0.99865 1.19389 0.91884 0.85632 0.92938 1.83977 1.70850 1.15556 1.37796 1.21282 1.42052 0.90327 0.93163 0.89117 1.25278 0.97189 0.95590 0.98405 1.70030 1.44527 1.09382 1.25886 0.85790 0.79354 0.78432 0.79908 1.19518 1.20283 1.19482 1.21146 1.09328 0.95353 0.99532 1.20543 0.96285 0.93357 0.96845 1.24369 0.94644 0.92219 1.02533 0.92580 0.92426 0.92446 0.91651 0.91421 0.88142 0.87740 0.76517 0.85822 0.91020 0.88757 0.90863 0.93916 0.87711 0.86662 0.91997 0.85609 0.87634 0.88651 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.87 37.16 0.37 -0.38 16 2 C -0.09 -0.48 6.22 -26.73 -0.17 -0.65 16 3 C -0.12 -0.81 5.25 -90.62 -0.48 -1.29 16 4 H 0.12 1.06 7.60 -51.93 -0.39 0.67 16 5 C -0.15 -0.91 9.88 -26.73 -0.26 -1.17 16 6 C -0.19 -1.31 5.91 -91.77 -0.54 -1.85 16 7 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 8 C 0.54 5.37 7.61 -10.99 -0.08 5.28 16 9 O -0.54 -7.60 15.86 5.56 0.09 -7.52 16 10 N -0.72 -5.68 5.36 -54.95 -0.29 -5.98 16 11 C 0.12 1.16 4.43 -69.63 -0.31 0.85 16 12 C 0.00 -0.06 7.75 -2.77 -0.02 -0.08 16 13 N -0.46 -5.77 6.14 -239.91 -1.47 -7.25 16 14 C 0.08 1.07 4.92 -4.97 -0.02 1.04 16 15 C -0.18 -3.02 5.44 -104.57 -0.57 -3.59 16 16 C -0.07 -1.18 9.69 -39.61 -0.38 -1.56 16 17 C -0.19 -4.16 9.99 -39.39 -0.39 -4.55 16 18 C 0.16 3.83 6.65 -39.10 -0.26 3.57 16 19 O -0.18 -5.18 9.76 0.03 0.00 -5.18 16 20 C -0.39 -11.11 9.49 30.88 0.29 -10.81 16 21 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 22 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 24 Si 0.94 20.75 29.55 -169.99 -5.02 15.72 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 28 C -0.23 -5.19 9.17 -39.40 -0.36 -5.55 16 29 C -0.05 -0.96 9.69 -39.61 -0.38 -1.35 16 30 C -0.01 -0.07 7.70 -2.76 -0.02 -0.09 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.27 7.88 -51.93 -0.41 -0.14 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.45 8.03 -51.93 -0.42 0.03 16 38 H 0.40 2.02 8.73 -40.82 -0.36 1.66 16 39 H 0.12 1.49 7.46 -51.93 -0.39 1.10 16 40 H 0.07 0.73 7.48 -51.93 -0.39 0.34 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.07 0.87 8.02 -51.93 -0.42 0.45 16 43 H 0.04 0.49 7.32 -51.93 -0.38 0.11 16 44 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 48 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 49 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.07 0.50 7.90 -51.93 -0.41 0.09 16 LS Contribution 415.71 15.07 6.26 6.26 Total: -1.00 -33.47 415.71 -11.29 -44.76 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.91 Total: 5.14 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -3.70 Total: -21.17 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -1.01 Total: -38.03 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.47 -11.29 -44.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030980557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.356 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds