Wall clock time and date at job start Wed Apr 1 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47125 * 2 1 4 4 H 1.08993 * 115.55027 * 29.33947 * 3 2 1 5 5 C 1.53003 * 117.51898 * 243.62893 * 3 2 1 6 6 C 1.52998 * 59.99996 * 252.52296 * 5 3 2 7 7 H 1.09000 * 117.49784 * 107.49628 * 6 5 3 8 8 C 1.50700 * 117.49850 * 252.50878 * 6 5 3 9 9 O 1.21280 * 120.00023 * 68.62980 * 8 6 5 10 10 N 1.34774 * 120.00169 * 248.62579 * 8 6 5 11 11 C 1.46504 * 120.00362 * 180.02562 * 10 8 6 12 12 C 1.53933 * 113.73383 * 251.72839 * 11 10 8 13 13 N 1.47959 * 86.18033 * 221.91847 * 12 11 10 14 14 C 1.46902 * 111.00078 * 137.57906 * 13 12 11 15 15 C 1.50702 * 109.46583 * 90.63934 * 14 13 12 16 16 C 1.38300 * 119.93271 * 269.72654 * 15 14 13 17 17 C 1.38097 * 120.06930 * 179.72927 * 16 15 14 18 18 C 1.38889 * 119.93053 * 0.52357 * 17 16 15 19 19 O 1.35751 * 120.06788 * 179.72694 * 18 17 16 20 20 C 1.34836 * 116.99554 * 174.48636 * 19 18 17 21 21 H 1.07997 * 119.99848 * 5.06067 * 20 19 18 22 22 C 1.38644 * 119.99523 * 185.05788 * 20 19 18 23 23 N 1.31562 * 120.00693 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99869 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47649 * 59.99837 * 24 22 20 26 26 H 1.48499 * 109.47562 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47198 * 299.99941 * 24 22 20 28 28 C 1.38876 * 119.85845 * 359.74914 * 18 17 16 29 29 C 1.38095 * 119.93503 * 0.02562 * 28 18 17 30 30 C 1.47968 * 90.76252 * 24.68991 * 13 12 11 31 31 H 1.09002 * 109.47440 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46609 * 299.99771 * 1 2 3 33 33 H 1.08994 * 109.47504 * 59.99151 * 1 2 3 34 34 H 1.09001 * 109.46649 * 240.00620 * 2 1 3 35 35 H 1.08994 * 109.47504 * 120.00849 * 2 1 3 36 36 H 1.09000 * 117.49657 * 145.03012 * 5 3 2 37 37 H 1.09002 * 117.49814 * 0.02562 * 5 3 2 38 38 H 0.97001 * 120.00105 * 359.97438 * 10 8 6 39 39 H 1.09002 * 112.93169 * 23.43117 * 11 10 8 40 40 H 1.09000 * 113.75866 * 336.23586 * 12 11 10 41 41 H 1.08998 * 113.76142 * 107.59963 * 12 11 10 42 42 H 1.08996 * 109.47050 * 210.63832 * 14 13 12 43 43 H 1.08992 * 109.47313 * 330.64283 * 14 13 12 44 44 H 1.08002 * 119.96242 * 359.97438 * 16 15 14 45 45 H 1.07997 * 120.03569 * 180.27152 * 17 16 15 46 46 H 0.96994 * 120.00206 * 180.02562 * 23 22 20 47 47 H 1.07996 * 120.03321 * 180.02562 * 28 18 17 48 48 H 1.08005 * 119.97275 * 180.02562 * 29 28 18 49 49 H 1.08998 * 113.75594 * 220.99359 * 30 13 12 50 50 H 1.08996 * 113.86143 * 89.64220 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1714 0.4818 5 6 2.8439 1.9081 -1.2157 6 6 3.5502 1.6578 0.1182 7 1 4.1804 0.7718 0.1955 8 6 4.0230 2.8616 0.8918 9 8 3.2160 3.6160 1.3924 10 7 5.3425 3.0997 1.0275 11 6 5.8022 4.2697 1.7801 12 6 6.4000 5.3791 0.8962 13 7 7.4436 5.5092 1.9370 14 6 8.7735 5.6640 1.3326 15 6 9.0668 7.1286 1.1324 16 6 8.7158 7.7468 -0.0538 17 6 8.9781 9.0900 -0.2382 18 6 9.6051 9.8177 0.7651 19 8 9.8693 11.1369 0.5847 20 6 10.3746 11.8096 1.6384 21 1 10.6276 11.2810 2.5455 22 6 10.5692 13.1799 1.5572 23 7 10.2604 13.8240 0.4524 24 14 11.2697 14.1118 3.0167 25 1 12.6156 13.5773 3.3458 26 1 11.3786 15.5535 2.6777 27 1 10.3714 13.9458 4.1876 28 6 9.9615 9.1926 1.9529 29 6 9.6922 7.8502 2.1330 30 6 7.2162 4.1119 2.3676 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8898 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8898 36 1 2.7211 2.9434 -1.5337 37 1 3.0092 1.1868 -2.0160 38 1 5.9880 2.4961 0.6276 39 1 5.0657 4.6283 2.4992 40 1 6.7775 5.0218 -0.0619 41 1 5.7616 6.2576 0.8022 42 1 9.5250 5.2297 1.9920 43 1 8.7966 5.1539 0.3697 44 1 8.2323 7.1794 -0.8354 45 1 8.6998 9.5733 -1.1630 46 1 10.3970 14.7826 0.3956 47 1 10.4487 9.7558 2.7350 48 1 9.9687 7.3636 3.0567 49 1 7.2300 3.9780 3.4492 50 1 7.8318 3.3826 1.8411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030980557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:57 Heat of formation + Delta-G solvation = -8.459917 kcal Electronic energy + Delta-G solvation = -28240.592044 eV Core-core repulsion = 24234.115804 eV Total energy + Delta-G solvation = -4006.476240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.63064 -40.80982 -40.26543 -38.31171 -37.85985 -35.16100 -34.32000 -32.94982 -32.31711 -31.76705 -28.95549 -27.37983 -27.11707 -25.94409 -24.68712 -24.01146 -23.60099 -21.94660 -21.53409 -21.34641 -20.73523 -19.83686 -18.85245 -18.30620 -17.69031 -16.72895 -16.61339 -16.39965 -16.13670 -16.09423 -15.73504 -15.52327 -15.45959 -15.25887 -15.13764 -14.73531 -14.45249 -14.21383 -14.01093 -13.68644 -13.55805 -13.51750 -13.39080 -13.03437 -12.98315 -12.86656 -12.68389 -12.41803 -12.32967 -12.18458 -12.15542 -11.92342 -11.89677 -11.65837 -11.26310 -11.17219 -11.06106 -10.82586 -10.76123 -10.12692 -9.78931 -9.73862 -8.90210 -8.47358 -6.15807 0.60765 0.68748 1.33988 1.43791 1.44923 1.50443 2.05413 2.17606 2.76305 2.85644 3.00879 3.22397 3.50831 3.52498 3.63860 3.77358 3.86851 3.90611 3.98856 4.05715 4.14810 4.19082 4.23093 4.29372 4.40601 4.42605 4.49372 4.57235 4.60255 4.64237 4.74726 4.76474 4.79747 4.84535 4.93219 4.99378 5.02239 5.09155 5.13987 5.16240 5.23215 5.25779 5.30478 5.39360 5.44519 5.50880 5.59536 5.72557 5.83379 6.02487 6.05936 6.24989 6.53376 6.97182 7.23690 7.78255 8.75727 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024483 B = 0.001539 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.365240 B =18189.333939 C =18508.086947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 C -0.128 4.128 4 H 0.088 0.912 5 C -0.139 4.139 6 C -0.189 4.189 7 H 0.156 0.844 8 C 0.537 3.463 9 O -0.589 6.589 10 N -0.701 5.701 11 C 0.121 3.879 12 C -0.007 4.007 13 N -0.493 5.493 14 C 0.085 3.915 15 C -0.151 4.151 16 C -0.059 4.059 17 C -0.207 4.207 18 C 0.111 3.889 19 O -0.235 6.235 20 C -0.415 4.415 21 H 0.100 0.900 22 C -0.023 4.023 23 N -0.921 5.921 24 Si 1.018 2.982 25 H -0.256 1.256 26 H -0.271 1.271 27 H -0.259 1.259 28 C -0.244 4.244 29 C -0.053 4.053 30 C 0.010 3.990 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.419 0.581 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.142 0.858 45 H 0.110 0.890 46 H 0.272 0.728 47 H 0.117 0.883 48 H 0.137 0.863 49 H 0.101 0.899 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.570 -33.490 -0.573 35.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.126 4.126 3 C -0.147 4.147 4 H 0.106 0.894 5 C -0.176 4.176 6 C -0.210 4.210 7 H 0.173 0.827 8 C 0.325 3.675 9 O -0.469 6.469 10 N -0.353 5.353 11 C 0.014 3.986 12 C -0.137 4.137 13 N -0.216 5.216 14 C -0.042 4.042 15 C -0.152 4.152 16 C -0.078 4.078 17 C -0.226 4.226 18 C 0.061 3.939 19 O -0.141 6.141 20 C -0.491 4.491 21 H 0.118 0.882 22 C -0.220 4.220 23 N -0.559 5.559 24 Si 0.837 3.163 25 H -0.180 1.180 26 H -0.195 1.195 27 H -0.184 1.184 28 C -0.263 4.263 29 C -0.072 4.072 30 C -0.119 4.119 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.150 0.850 38 H 0.257 0.743 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.160 0.840 45 H 0.128 0.872 46 H 0.081 0.919 47 H 0.134 0.866 48 H 0.155 0.845 49 H 0.119 0.881 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.155 -32.085 -0.016 33.969 hybrid contribution 0.682 0.734 -0.245 1.031 sum -10.473 -31.351 -0.261 33.055 Atomic orbital electron populations 1.21762 0.95387 1.02202 1.01643 1.21144 0.96125 0.92195 1.03113 1.22476 0.91120 0.99422 1.01710 0.89376 1.23186 1.00770 1.03160 0.90482 1.22388 0.98090 0.98410 1.02076 0.82671 1.20346 0.82407 0.85727 0.79021 1.90707 1.55301 1.50548 1.50389 1.45822 1.06916 1.27830 1.54686 1.22767 0.95975 0.85714 0.94106 1.24514 0.94706 0.98717 0.95724 1.68538 1.03685 1.23422 1.25971 1.21398 0.91925 0.91209 0.99717 1.19599 1.04261 0.97003 0.94347 1.20840 0.97229 0.92108 0.97609 1.20434 1.07317 0.95625 0.99230 1.19948 0.93999 0.84868 0.95090 1.83938 1.73642 1.17726 1.38838 1.21781 1.42483 0.91168 0.93688 0.88223 1.26588 0.97419 0.96232 1.01752 1.70180 1.47335 1.09754 1.28672 0.84658 0.79044 0.76817 0.75752 1.17973 1.19515 1.18365 1.21257 1.09556 0.97027 0.98504 1.20923 0.95747 0.91924 0.98602 1.24387 0.93507 0.90749 1.03247 0.91453 0.93596 0.92648 0.89846 0.91072 0.89815 0.84991 0.74264 0.88699 0.88991 0.91545 0.88757 0.91228 0.84000 0.87201 0.91859 0.86552 0.84484 0.88074 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.87 71.98 0.71 -0.64 16 2 C -0.09 -0.71 6.22 30.59 0.19 -0.52 16 3 C -0.13 -1.63 5.25 -10.79 -0.06 -1.69 16 4 H 0.09 1.68 7.60 -2.39 -0.02 1.66 16 5 C -0.14 -1.40 9.88 30.59 0.30 -1.09 16 6 C -0.19 -2.08 5.91 -11.54 -0.07 -2.14 16 7 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 8 C 0.54 9.86 7.61 87.66 0.67 10.52 16 9 O -0.59 -17.11 15.86 -3.03 -0.05 -17.16 16 10 N -0.70 -9.01 5.36 -446.14 -2.39 -11.40 16 11 C 0.12 2.10 4.43 46.56 0.21 2.30 16 12 C -0.01 -0.13 7.75 86.41 0.67 0.54 16 13 N -0.49 -10.34 6.14 -912.94 -5.61 -15.95 16 14 C 0.09 1.75 4.92 85.56 0.42 2.17 16 15 C -0.15 -4.66 5.44 -19.83 -0.11 -4.77 16 16 C -0.06 -2.01 9.69 22.25 0.22 -1.79 16 17 C -0.21 -9.09 9.99 22.39 0.22 -8.86 16 18 C 0.11 5.73 6.65 22.58 0.15 5.88 16 19 O -0.23 -14.59 9.76 -22.81 -0.22 -14.81 16 20 C -0.42 -24.87 9.49 67.92 0.64 -24.23 16 21 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 22 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 23 N -0.92 -57.70 13.67 21.61 0.30 -57.41 16 24 Si 1.02 43.81 29.55 68.60 2.03 45.84 16 25 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 27 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 28 C -0.24 -11.00 9.17 22.39 0.21 -10.79 16 29 C -0.05 -1.89 9.69 22.25 0.22 -1.67 16 30 C 0.01 0.13 7.70 86.40 0.67 0.80 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 0.39 7.88 -2.39 -0.02 0.37 16 35 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.13 0.62 8.03 -2.39 -0.02 0.60 16 38 H 0.42 2.25 8.73 -92.71 -0.81 1.44 16 39 H 0.09 2.26 7.46 -2.39 -0.02 2.25 16 40 H 0.09 1.46 7.48 -2.39 -0.02 1.44 16 41 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.09 1.63 8.02 -2.39 -0.02 1.62 16 43 H 0.07 1.12 7.32 -2.39 -0.02 1.11 16 44 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 45 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 46 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 47 H 0.12 5.34 5.64 -2.91 -0.02 5.33 16 48 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 49 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.10 0.76 7.90 -2.39 -0.02 0.74 16 Total: -1.00 -81.51 415.71 -0.09 -81.60 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.14 Total: 26.13 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 5.72 Total: -36.84 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -7.71 Total: -84.76 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.27 Total: -31.97 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -81.51 -0.09 -81.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030980557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.143 kcal (2) G-P(sol) polarization free energy of solvation -81.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds