Wall clock time and date at job start Wed Apr 1 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46947 * 2 1 4 4 H 1.08997 * 109.87369 * 54.55548 * 3 2 1 5 5 C 1.54098 * 109.87736 * 175.71657 * 3 2 1 6 6 C 1.54812 * 104.19175 * 121.45693 * 5 3 2 7 7 C 1.55000 * 102.08808 * 20.87734 * 6 5 3 8 8 H 1.08998 * 110.75071 * 81.54746 * 7 6 5 9 9 C 1.50708 * 110.61565 * 204.47759 * 7 6 5 10 10 O 1.21277 * 119.99654 * 110.53067 * 9 7 6 11 11 N 1.34777 * 120.00108 * 290.52582 * 9 7 6 12 12 C 1.46497 * 119.99771 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.46877 * 179.97438 * 12 11 9 14 14 C 1.38252 * 120.02020 * 269.97834 * 13 12 11 15 15 C 1.38137 * 119.96339 * 180.02562 * 14 13 12 16 16 C 1.38447 * 120.10206 * 0.02562 * 15 14 13 17 17 C 1.38069 * 119.93432 * 359.97438 * 16 15 14 18 18 C 1.38148 * 120.01464 * 89.99955 * 13 12 11 19 19 C 1.50787 * 108.85682 * 180.02562 * 17 16 15 20 20 N 1.46634 * 107.70340 * 0.02562 * 19 17 16 21 21 C 1.36931 * 126.56003 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00644 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99715 * 179.97438 * 21 20 19 24 24 N 1.31611 * 120.00107 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99746 * 179.72150 * 23 21 20 26 26 H 1.48497 * 109.47323 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46790 * 120.00304 * 25 23 21 28 28 H 1.48501 * 109.47364 * 240.00332 * 25 23 21 29 29 C 1.46634 * 106.87479 * 0.26054 * 20 19 17 30 30 O 1.43745 * 109.88045 * 293.54736 * 3 2 1 31 31 H 1.09002 * 109.46952 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47177 * 299.99979 * 1 2 3 33 33 H 1.08996 * 109.47510 * 60.00073 * 1 2 3 34 34 H 1.09000 * 109.47177 * 240.00021 * 2 1 3 35 35 H 1.09000 * 109.47278 * 120.00367 * 2 1 3 36 36 H 1.09004 * 110.48879 * 240.13091 * 5 3 2 37 37 H 1.09002 * 110.49146 * 2.64363 * 5 3 2 38 38 H 1.08999 * 110.90504 * 262.68385 * 6 5 3 39 39 H 1.08992 * 110.91202 * 139.07836 * 6 5 3 40 40 H 0.97003 * 119.99817 * 0.02562 * 11 9 7 41 41 H 1.08992 * 109.47268 * 59.99928 * 12 11 9 42 42 H 1.09006 * 109.47009 * 299.99642 * 12 11 9 43 43 H 1.08005 * 120.01448 * 359.97438 * 14 13 12 44 44 H 1.08003 * 119.95318 * 179.97438 * 15 14 13 45 45 H 1.08001 * 119.95189 * 359.97438 * 18 13 12 46 46 H 1.09003 * 109.80687 * 240.45143 * 19 17 16 47 47 H 1.08998 * 109.86710 * 119.58485 * 19 17 16 48 48 H 0.97000 * 120.00330 * 179.97438 * 24 23 21 49 49 H 1.09004 * 109.81014 * 119.28410 * 29 20 19 50 50 H 1.08997 * 109.81620 * 240.19025 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6030 1.9900 0.8351 5 6 3.5771 1.4548 0.1082 6 6 4.0410 2.2089 -1.1617 7 6 2.7658 2.9974 -1.5550 8 1 2.6786 3.9098 -0.9650 9 6 2.7732 3.3182 -3.0275 10 8 1.9862 2.7719 -3.7711 11 7 3.6545 4.2123 -3.5180 12 6 3.6613 4.5245 -4.9493 13 6 4.7322 5.5455 -5.2355 14 6 4.4345 6.8945 -5.1791 15 6 5.4168 7.8293 -5.4422 16 6 6.6992 7.4176 -5.7630 17 6 6.9964 6.0705 -5.8193 18 6 6.0117 5.1340 -5.5549 19 6 8.4498 5.9071 -6.1865 20 7 9.0217 7.2473 -6.3504 21 6 10.3156 7.5467 -6.6840 22 1 11.0270 6.7523 -6.8548 23 6 10.7126 8.8715 -6.8037 24 7 9.8456 9.8397 -6.5961 25 14 12.4796 9.2801 -7.2512 26 1 13.2499 8.0225 -7.4245 27 1 12.5030 10.0532 -8.5189 28 1 13.0905 10.0897 -6.1664 29 6 7.9444 8.2054 -6.0832 30 8 1.6937 2.0833 -1.2392 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.8921 1.9882 1.0051 37 1 3.9674 0.4371 0.1140 38 1 4.3236 1.5091 -1.9482 39 1 4.8627 2.8874 -0.9329 40 1 4.2842 4.6490 -2.9232 41 1 2.6902 4.9263 -5.2381 42 1 3.8629 3.6168 -5.5182 43 1 3.4343 7.2170 -4.9302 44 1 5.1840 8.8831 -5.3985 45 1 6.2440 4.0802 -5.5988 46 1 8.5345 5.3520 -7.1208 47 1 8.9750 5.3762 -5.3926 48 1 10.1230 10.7654 -6.6794 49 1 8.2132 8.8368 -5.2363 50 1 7.7715 8.8224 -6.9649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054267372.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:45 Heat of formation + Delta-G solvation = -34.644500 kcal Electronic energy + Delta-G solvation = -29064.084793 eV Core-core repulsion = 25056.473105 eV Total energy + Delta-G solvation = -4007.611689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.64298 -39.75447 -38.80934 -36.38366 -34.58019 -33.96749 -32.63718 -32.21921 -31.23786 -29.93850 -29.04363 -27.35440 -26.05501 -24.99274 -23.90593 -22.42301 -22.06005 -21.29108 -20.65086 -20.46648 -20.10315 -17.64904 -17.10152 -17.03885 -16.52471 -15.80327 -15.57497 -15.28149 -15.10739 -14.61388 -14.43210 -14.32581 -14.14424 -13.92635 -13.88421 -13.71975 -13.39967 -13.20930 -13.06059 -12.57893 -12.20764 -12.15851 -11.98501 -11.89366 -11.86679 -11.70381 -11.59887 -11.42953 -11.18254 -11.11999 -10.98705 -10.89159 -10.52084 -10.26680 -10.21231 -10.15086 -9.85216 -9.82350 -9.24280 -8.99826 -8.46490 -8.06645 -6.90092 -5.86121 -3.19443 1.51469 1.69970 2.39416 2.76906 3.33962 3.39359 3.42052 3.64996 4.03149 4.10304 4.25685 4.36840 4.44601 4.47545 4.67199 4.68285 4.76888 4.87965 4.93061 4.95810 5.12059 5.21180 5.27288 5.27823 5.32741 5.39062 5.42401 5.46379 5.51074 5.53553 5.60516 5.63632 5.64883 5.81272 5.83152 5.98037 6.00563 6.06670 6.20324 6.45190 6.48258 6.49356 6.51033 6.72187 6.74649 7.00774 7.28143 7.28524 7.33442 7.48410 7.64751 8.02900 8.08576 9.06866 9.66732 10.33536 11.28070 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023603 B = 0.001791 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.029792 B =15633.849075 C =16260.818061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.072 3.928 4 H 0.071 0.929 5 C -0.151 4.151 6 C -0.143 4.143 7 C 0.059 3.941 8 H 0.095 0.905 9 C 0.517 3.483 10 O -0.522 6.522 11 N -0.721 5.721 12 C 0.172 3.828 13 C -0.132 4.132 14 C -0.103 4.103 15 C -0.112 4.112 16 C -0.080 4.080 17 C -0.107 4.107 18 C -0.083 4.083 19 C 0.176 3.824 20 N -0.600 5.600 21 C -0.226 4.226 22 H 0.084 0.916 23 C -0.007 4.007 24 N -0.923 5.923 25 Si 0.918 3.082 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.289 1.289 29 C 0.205 3.795 30 O -0.341 6.341 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.403 0.597 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.037 0.963 47 H 0.036 0.964 48 H 0.255 0.745 49 H 0.064 0.936 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.279 -14.446 14.239 25.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C 0.014 3.986 4 H 0.089 0.911 5 C -0.189 4.189 6 C -0.181 4.181 7 C -0.002 4.002 8 H 0.113 0.887 9 C 0.302 3.698 10 O -0.397 6.397 11 N -0.374 5.374 12 C 0.049 3.951 13 C -0.133 4.133 14 C -0.121 4.121 15 C -0.131 4.131 16 C -0.081 4.081 17 C -0.108 4.108 18 C -0.102 4.102 19 C 0.050 3.950 20 N -0.327 5.327 21 C -0.354 4.354 22 H 0.102 0.898 23 C -0.203 4.203 24 N -0.570 5.570 25 Si 0.748 3.252 26 H -0.203 1.203 27 H -0.216 1.216 28 H -0.216 1.216 29 C 0.081 3.919 30 O -0.260 6.260 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.238 0.762 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.065 0.935 49 H 0.082 0.918 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.904 -14.716 13.517 25.538 hybrid contribution 1.386 0.656 0.185 1.544 sum -14.518 -14.060 13.702 24.417 Atomic orbital electron populations 1.21728 0.95178 1.01567 1.02394 1.21715 0.97032 0.94553 1.02608 1.22892 0.94030 0.94393 0.87240 0.91084 1.23019 0.95349 1.02173 0.98328 1.23093 0.96918 0.99710 0.98413 1.22971 0.88437 0.95178 0.93629 0.88703 1.20175 0.80833 0.79338 0.89443 1.90732 1.38737 1.50621 1.59637 1.46070 1.37486 1.43843 1.10019 1.20110 0.97443 0.97015 0.80515 1.19450 0.94204 0.93843 1.05789 1.20829 0.98809 0.92130 1.00381 1.20506 0.91810 0.99578 1.01186 1.21558 0.95950 0.96175 0.94416 1.20730 0.96496 0.94145 0.99385 1.20301 0.91470 0.98678 0.99777 1.19705 0.87317 0.90054 0.97937 1.43958 1.07327 0.99034 1.82377 1.19031 0.83846 0.92075 1.40434 0.89779 1.24839 0.98479 0.95428 1.01595 1.69926 1.33019 0.98889 1.55148 0.85953 0.83443 0.78088 0.77722 1.20350 1.21592 1.21602 1.19748 0.81277 0.90378 1.00537 1.89029 1.40879 1.56225 1.39841 0.92804 0.92940 0.91751 0.91055 0.90808 0.90171 0.89864 0.89810 0.89124 0.76250 0.90728 0.90760 0.86288 0.86090 0.86534 0.94564 0.94642 0.93488 0.91793 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.82 37.16 0.37 -0.74 16 2 C -0.12 -0.85 5.42 -26.73 -0.14 -0.99 16 3 C 0.07 0.55 3.41 -26.16 -0.09 0.46 16 4 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 5 C -0.15 -0.88 6.64 -25.20 -0.17 -1.05 16 6 C -0.14 -0.99 6.58 -24.72 -0.16 -1.16 16 7 C 0.06 0.54 3.76 -26.82 -0.10 0.44 16 8 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 9 C 0.52 6.13 7.20 -10.98 -0.08 6.05 16 10 O -0.52 -8.50 16.57 -13.48 -0.22 -8.73 16 11 N -0.72 -7.28 5.55 -61.47 -0.34 -7.62 16 12 C 0.17 1.96 5.80 -5.19 -0.03 1.93 16 13 C -0.13 -1.71 5.25 -104.65 -0.55 -2.26 16 14 C -0.10 -1.37 9.70 -39.61 -0.38 -1.76 16 15 C -0.11 -1.79 10.05 -39.54 -0.40 -2.19 16 16 C -0.08 -1.55 6.22 -104.57 -0.65 -2.20 16 17 C -0.11 -1.96 6.22 -104.57 -0.65 -2.61 16 18 C -0.08 -1.22 9.70 -39.54 -0.38 -1.60 16 19 C 0.18 3.66 7.25 -5.08 -0.04 3.62 16 20 N -0.60 -15.24 3.41 -175.67 -0.60 -15.83 16 21 C -0.23 -6.17 10.32 -15.06 -0.16 -6.32 16 22 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 23 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 24 N -0.92 -26.30 10.44 55.49 0.58 -25.72 16 25 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 C 0.20 4.92 5.39 -5.08 -0.03 4.89 16 30 O -0.34 -3.80 10.09 -54.27 -0.55 -4.35 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.60 7.89 -51.93 -0.41 0.19 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.43 7.70 -51.93 -0.40 0.03 16 38 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.40 3.31 8.46 -40.82 -0.35 2.96 16 41 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 42 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 43 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 44 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 45 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.06 1.68 7.51 -51.93 -0.39 1.29 16 50 H 0.06 1.71 7.47 -51.93 -0.39 1.32 16 LS Contribution 406.14 15.07 6.12 6.12 Total: -1.00 -32.67 406.14 -12.01 -44.68 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -8.23 Total: 0.77 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -3.74 Total: -5.78 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.36 Total: -49.17 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.77 Total: -13.08 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.67 -12.01 -44.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054267372.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.034 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds