Wall clock time and date at job start Wed Apr 1 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47044 * 2 1 4 4 H 1.09000 * 110.53944 * 52.38407 * 3 2 1 5 5 C 1.54811 * 110.48625 * 289.76285 * 3 2 1 6 6 C 1.54990 * 102.09295 * 220.44589 * 5 3 2 7 7 O 1.44373 * 103.49227 * 37.02352 * 6 5 3 8 8 C 1.43740 * 106.97703 * 319.94103 * 7 6 5 9 9 H 1.09004 * 109.88121 * 266.93938 * 8 7 6 10 10 C 1.50703 * 109.88289 * 145.93558 * 8 7 6 11 11 O 1.21283 * 119.99488 * 356.45279 * 10 8 7 12 12 N 1.34777 * 120.00290 * 176.45719 * 10 8 7 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 8 14 14 C 1.50700 * 109.46769 * 179.72341 * 13 12 10 15 15 C 1.38249 * 120.01977 * 90.00132 * 14 13 12 16 16 C 1.38144 * 119.96170 * 179.97438 * 15 14 13 17 17 C 1.38447 * 120.10381 * 359.97438 * 16 15 14 18 18 C 1.38073 * 119.93647 * 0.02562 * 17 16 15 19 19 C 1.38147 * 120.01660 * 269.72226 * 14 13 12 20 20 C 1.50774 * 108.86231 * 179.97438 * 18 17 16 21 21 N 1.46636 * 107.70478 * 359.97438 * 20 18 17 22 22 C 1.36927 * 126.56616 * 179.97438 * 21 20 18 23 23 H 1.08003 * 120.00133 * 0.02562 * 22 21 20 24 24 C 1.38815 * 120.00305 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99676 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00247 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.46984 * 90.00294 * 26 24 22 28 28 H 1.48505 * 109.47106 * 209.99812 * 26 24 22 29 29 H 1.48497 * 109.47482 * 330.00087 * 26 24 22 30 30 C 1.46639 * 106.87124 * 0.02562 * 21 20 18 31 31 H 1.09006 * 109.47690 * 300.00276 * 1 2 3 32 32 H 1.08997 * 109.47301 * 60.00003 * 1 2 3 33 33 H 1.09007 * 109.47420 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47044 * 239.99659 * 2 1 3 35 35 H 1.08999 * 109.46940 * 119.99610 * 2 1 3 36 36 H 1.09003 * 110.90519 * 102.24495 * 5 3 2 37 37 H 1.09003 * 110.90839 * 338.64699 * 5 3 2 38 38 H 1.09009 * 110.61656 * 278.52641 * 6 5 3 39 39 H 1.09001 * 110.62253 * 155.53115 * 6 5 3 40 40 H 0.97001 * 119.99727 * 359.97438 * 12 10 8 41 41 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 42 42 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 43 43 H 1.07991 * 120.02146 * 0.02562 * 15 14 13 44 44 H 1.07997 * 119.94844 * 180.02562 * 16 15 14 45 45 H 1.08010 * 119.94950 * 359.97438 * 19 14 13 46 46 H 1.08997 * 109.81473 * 240.45109 * 20 18 17 47 47 H 1.09001 * 109.81350 * 119.54821 * 20 18 17 48 48 H 0.97002 * 119.99818 * 179.97438 * 25 24 22 49 49 H 1.09007 * 109.81179 * 240.45522 * 30 21 20 50 50 H 1.08996 * 109.81686 * 119.54938 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5800 2.0107 0.8085 5 6 1.7582 2.1168 -1.3648 6 6 3.0603 2.9229 -1.6036 7 8 4.0920 2.0593 -1.0801 8 6 3.5755 1.4717 0.1258 9 1 3.8677 2.0738 0.9862 10 6 4.1038 0.0687 0.2793 11 8 4.7987 -0.4159 -0.5885 12 7 3.8040 -0.6475 1.3810 13 6 4.3226 -2.0092 1.5330 14 6 3.8507 -2.5830 2.8441 15 6 2.6575 -3.2786 2.9052 16 6 2.2263 -3.8045 4.1076 17 6 2.9875 -3.6366 5.2518 18 6 4.1791 -2.9418 5.1909 19 6 4.6130 -2.4191 3.9845 20 6 4.7955 -2.9097 6.5665 21 7 3.8986 -3.6322 7.4740 22 6 4.0866 -3.8370 8.8148 23 1 4.9681 -3.4473 9.3022 24 6 3.1443 -4.5455 9.5476 25 7 2.0703 -5.0208 8.9535 26 14 3.4005 -4.8242 11.3768 27 1 2.7876 -3.7063 12.1385 28 1 2.7621 -6.1041 11.7767 29 1 4.8551 -4.8839 11.6696 30 6 2.7624 -4.0946 6.6706 31 1 -0.3635 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 0.8960 2.7806 -1.3001 37 1 1.6145 1.3698 -2.1454 38 1 3.0342 3.8652 -1.0561 39 1 3.2120 3.1006 -2.6683 40 1 3.2485 -0.2598 2.0752 41 1 3.9601 -2.6296 0.7133 42 1 5.4122 -1.9869 1.5173 43 1 2.0633 -3.4115 2.0133 44 1 1.2944 -4.3483 4.1550 45 1 5.5475 -1.8798 3.9355 46 1 4.9035 -1.8773 6.8989 47 1 5.7709 -3.3959 6.5457 48 1 1.4120 -5.5162 9.4655 49 1 1.8381 -3.6636 7.0555 50 1 2.7053 -5.1826 6.7031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054269046.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:16 Heat of formation + Delta-G solvation = -22.991979 kcal Electronic energy + Delta-G solvation = -29921.558935 eV Core-core repulsion = 25914.452538 eV Total energy + Delta-G solvation = -4007.106398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.00867 -39.73237 -38.58075 -36.39311 -35.35996 -34.28652 -32.31524 -31.35902 -30.70818 -30.12269 -29.39696 -27.37632 -26.03097 -24.75494 -23.96891 -23.00780 -22.07265 -21.50149 -20.46966 -20.36847 -19.89412 -17.46596 -17.13453 -17.04045 -16.52454 -15.73153 -15.63140 -15.24785 -15.04428 -14.87649 -14.52844 -14.46554 -14.31441 -14.19714 -13.81540 -13.53571 -13.30313 -13.05666 -12.96921 -12.62327 -12.34253 -12.02714 -11.96182 -11.87989 -11.71227 -11.64827 -11.58988 -11.49873 -11.11481 -11.06853 -11.00013 -10.87172 -10.51504 -10.40123 -10.25715 -10.17393 -9.83773 -9.71811 -9.10892 -8.98771 -8.46016 -8.06095 -6.89761 -5.85619 -3.18936 1.52149 1.70250 2.42850 2.83224 3.34634 3.39499 3.41690 3.66996 3.96665 4.08525 4.22103 4.37337 4.37858 4.57770 4.69860 4.76507 4.79885 4.93430 4.96554 5.02514 5.06836 5.21039 5.23072 5.27765 5.31121 5.39371 5.41445 5.45714 5.47775 5.54058 5.62793 5.64919 5.75450 5.79937 5.81673 5.95896 5.98745 6.07083 6.20466 6.40174 6.45733 6.49997 6.51665 6.72496 6.74772 7.01193 7.28399 7.28672 7.33538 7.48482 7.64828 8.04395 8.09116 9.07302 9.67135 10.33987 11.28508 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021318 B = 0.002070 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.104071 B =13520.347715 C =13820.358405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C -0.113 4.113 4 H 0.094 0.906 5 C -0.148 4.148 6 C 0.043 3.957 7 O -0.347 6.347 8 C 0.061 3.939 9 H 0.095 0.905 10 C 0.518 3.482 11 O -0.522 6.522 12 N -0.722 5.722 13 C 0.170 3.830 14 C -0.132 4.132 15 C -0.103 4.103 16 C -0.112 4.112 17 C -0.080 4.080 18 C -0.106 4.106 19 C -0.084 4.084 20 C 0.175 3.825 21 N -0.601 5.601 22 C -0.226 4.226 23 H 0.084 0.916 24 C -0.007 4.007 25 N -0.923 5.923 26 Si 0.918 3.082 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.280 1.280 30 C 0.205 3.795 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.404 0.596 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.036 0.964 47 H 0.037 0.963 48 H 0.255 0.745 49 H 0.064 0.936 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.338 13.455 -19.741 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C -0.132 4.132 4 H 0.113 0.887 5 C -0.186 4.186 6 C -0.033 4.033 7 O -0.265 6.265 8 C -0.001 4.001 9 H 0.112 0.888 10 C 0.304 3.696 11 O -0.397 6.397 12 N -0.378 5.378 13 C 0.048 3.952 14 C -0.132 4.132 15 C -0.121 4.121 16 C -0.131 4.131 17 C -0.081 4.081 18 C -0.107 4.107 19 C -0.103 4.103 20 C 0.049 3.951 21 N -0.327 5.327 22 C -0.354 4.354 23 H 0.102 0.898 24 C -0.204 4.204 25 N -0.570 5.570 26 Si 0.748 3.252 27 H -0.214 1.214 28 H -0.215 1.215 29 H -0.205 1.205 30 C 0.081 3.919 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.240 0.760 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.065 0.935 49 H 0.082 0.918 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.697 12.943 -20.275 24.205 hybrid contribution -0.432 0.055 1.403 1.469 sum -3.128 12.999 -18.871 23.127 Atomic orbital electron populations 1.21749 0.95073 1.02068 1.01753 1.22092 0.96825 0.94714 1.04006 1.22583 0.92947 0.98490 0.99146 0.88721 1.23241 0.98568 0.99889 0.96895 1.23643 0.86296 0.93228 1.00173 1.89009 1.37676 1.61070 1.38744 1.22751 0.93881 0.92731 0.90705 0.88791 1.20303 0.80269 0.87112 0.81955 1.90724 1.36992 1.71235 1.40784 1.46334 1.53700 1.15938 1.21788 1.20104 0.98982 0.81619 0.94499 1.19447 0.96741 1.03038 0.94020 1.20808 0.95675 0.98302 0.97361 1.20497 1.00081 1.01135 0.91340 1.21557 0.94076 0.94937 0.97561 1.20725 0.96619 0.98025 0.95304 1.20315 0.99370 0.99757 0.90812 1.19708 0.93775 0.96150 0.85419 1.43957 1.20705 1.63286 1.04781 1.18979 1.05274 1.29871 0.81246 0.89844 1.24844 0.96778 1.00075 0.98683 1.69923 1.11274 1.41080 1.34743 0.86020 0.77577 0.77386 0.84190 1.21432 1.21540 1.20527 1.19745 0.91994 0.98687 0.81490 0.92490 0.92868 0.92379 0.91448 0.89582 0.89786 0.90054 0.91813 0.88549 0.76038 0.90748 0.90791 0.86342 0.86135 0.86522 0.94599 0.94567 0.93451 0.91788 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.79 37.15 0.36 -0.62 16 2 C -0.14 -1.07 4.15 -26.73 -0.11 -1.18 16 3 C -0.11 -0.78 3.04 -89.09 -0.27 -1.05 16 4 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 5 C -0.15 -0.92 6.03 -24.73 -0.15 -1.07 16 6 C 0.04 0.31 7.72 38.21 0.29 0.60 16 7 O -0.35 -3.96 10.74 -54.80 -0.59 -4.55 16 8 C 0.06 0.57 3.84 -27.31 -0.10 0.46 16 9 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 10 C 0.52 6.14 5.66 -10.98 -0.06 6.08 16 11 O -0.52 -8.48 16.53 -14.01 -0.23 -8.71 16 12 N -0.72 -7.21 3.75 -61.47 -0.23 -7.44 16 13 C 0.17 1.92 5.80 -5.19 -0.03 1.89 16 14 C -0.13 -1.68 5.25 -104.65 -0.55 -2.23 16 15 C -0.10 -1.34 9.70 -39.61 -0.38 -1.72 16 16 C -0.11 -1.76 10.05 -39.54 -0.40 -2.16 16 17 C -0.08 -1.55 6.22 -104.57 -0.65 -2.20 16 18 C -0.11 -1.94 6.22 -104.57 -0.65 -2.59 16 19 C -0.08 -1.23 9.70 -39.54 -0.38 -1.61 16 20 C 0.18 3.67 7.25 -5.08 -0.04 3.63 16 21 N -0.60 -15.30 3.41 -175.67 -0.60 -15.89 16 22 C -0.23 -6.18 10.32 -15.06 -0.16 -6.33 16 23 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 24 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 25 N -0.92 -26.33 10.45 55.49 0.58 -25.75 16 26 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 30 C 0.21 4.92 5.39 -5.08 -0.03 4.90 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.32 7.62 -51.93 -0.40 -0.08 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.64 7.70 -51.93 -0.40 0.24 16 35 H 0.09 0.69 4.87 -51.93 -0.25 0.44 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.56 7.77 -51.93 -0.40 0.16 16 38 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.40 3.37 7.57 -40.82 -0.31 3.06 16 41 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 42 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 45 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.06 1.68 7.49 -51.92 -0.39 1.29 16 50 H 0.06 1.70 7.49 -51.93 -0.39 1.31 16 LS Contribution 397.63 15.07 5.99 5.99 Total: -1.00 -32.68 397.63 -11.50 -44.18 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.00 Total: 1.18 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -3.40 Total: -5.51 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.25 Total: -49.09 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.82 Total: -13.26 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.68 -11.50 -44.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054269046.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.188 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds