Wall clock time and date at job start Wed Apr 1 2020 02:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46745 * 2 1 4 4 C 1.53002 * 109.47344 * 240.00468 * 2 1 3 5 5 C 1.50700 * 109.47448 * 120.00187 * 2 1 3 6 6 O 1.20775 * 119.99685 * 0.02562 * 5 2 1 7 7 C 1.49087 * 119.99899 * 180.02562 * 5 2 1 8 8 O 1.21362 * 120.00259 * 359.97438 * 7 5 2 9 9 N 1.34770 * 119.99909 * 180.02562 * 7 5 2 10 10 C 1.47021 * 125.65222 * 180.02562 * 9 7 5 11 11 C 1.54327 * 107.27699 * 178.99505 * 10 9 7 12 12 H 1.08995 * 110.71873 * 96.16926 * 11 10 9 13 13 C 1.50700 * 110.72205 * 219.44568 * 11 10 9 14 14 C 1.38233 * 119.99910 * 53.24084 * 13 11 10 15 15 C 1.38242 * 119.99783 * 179.80781 * 14 13 11 16 16 C 1.38241 * 119.99729 * 0.40502 * 15 14 13 17 17 C 1.38236 * 120.00029 * 359.85448 * 16 15 14 18 18 C 1.38234 * 120.00117 * 359.95282 * 17 16 15 19 19 C 1.55164 * 102.93862 * 337.80831 * 11 10 9 20 20 H 1.09005 * 110.99936 * 277.38862 * 19 11 10 21 21 N 1.46494 * 111.00019 * 153.57834 * 19 11 10 22 22 C 1.36945 * 119.99612 * 158.18009 * 21 19 11 23 23 H 1.07999 * 120.00077 * 359.97438 * 22 21 19 24 24 C 1.38812 * 119.99637 * 179.97438 * 22 21 19 25 25 N 1.31617 * 120.00227 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99854 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46819 * 59.99973 * 26 24 22 28 28 H 1.48494 * 109.47285 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47086 * 300.00269 * 26 24 22 30 30 C 1.47468 * 125.62862 * 0.02562 * 9 7 5 31 31 H 1.08997 * 109.46807 * 299.99472 * 1 2 3 32 32 H 1.08994 * 109.47380 * 59.99962 * 1 2 3 33 33 H 1.08999 * 109.46597 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47025 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47213 * 300.00140 * 3 2 1 36 36 H 1.08997 * 109.47037 * 60.00669 * 3 2 1 37 37 H 1.09004 * 109.46631 * 300.00028 * 4 2 1 38 38 H 1.09007 * 109.47091 * 59.99333 * 4 2 1 39 39 H 1.08994 * 109.47126 * 179.97438 * 4 2 1 40 40 H 1.09001 * 109.88450 * 59.57487 * 10 9 7 41 41 H 1.09003 * 109.88177 * 298.41386 * 10 9 7 42 42 H 1.07994 * 120.00091 * 0.02562 * 14 13 11 43 43 H 1.07994 * 120.00205 * 180.23673 * 15 14 13 44 44 H 1.07998 * 119.99918 * 179.82753 * 16 15 14 45 45 H 1.07997 * 119.99733 * 179.97438 * 17 16 15 46 46 H 1.08001 * 120.00379 * 179.97438 * 18 17 16 47 47 H 0.96995 * 120.00290 * 338.44900 * 21 19 11 48 48 H 0.97005 * 120.00046 * 179.97438 * 25 24 22 49 49 H 1.08995 * 110.35047 * 85.23360 * 30 9 7 50 50 H 1.09004 * 110.40962 * 322.89386 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2476 -1.1699 2.0252 7 6 3.4982 -0.8461 1.4665 8 8 4.2868 -0.3848 0.6677 9 7 3.9475 -1.4819 2.5666 10 6 5.3595 -1.6858 2.9219 11 6 5.3892 -2.4359 4.2703 12 1 5.5021 -3.5084 4.1126 13 6 6.4912 -1.9060 5.1511 14 6 6.5738 -0.5517 5.4155 15 6 7.5824 -0.0661 6.2267 16 6 8.5133 -0.9339 6.7666 17 6 8.4338 -2.2875 6.4977 18 6 7.4229 -2.7736 5.6898 19 6 3.9981 -2.1137 4.8777 20 1 4.0032 -1.1423 5.3720 21 7 3.5718 -3.1677 5.8015 22 6 2.6331 -2.8982 6.7615 23 1 2.2074 -1.9086 6.8377 24 6 2.2288 -3.8970 7.6365 25 7 2.7479 -5.1029 7.5439 26 14 0.9488 -3.5293 8.9464 27 1 -0.3120 -3.0894 8.2967 28 1 0.6921 -4.7543 9.7454 29 1 1.4484 -2.4518 9.8379 30 6 3.1039 -2.0881 3.6132 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3632 -1.0277 -0.0005 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 -1.7488 -1.2493 38 1 1.6766 -0.2073 -2.1393 39 1 3.1300 -0.7207 -1.2495 40 1 5.8594 -0.7224 3.0225 41 1 5.8523 -2.2831 2.1546 42 1 5.8484 0.1266 4.9913 43 1 7.6447 0.9914 6.4364 44 1 9.3029 -0.5542 7.3980 45 1 9.1612 -2.9654 6.9192 46 1 7.3609 -3.8311 5.4794 47 1 3.9573 -4.0554 5.7358 48 1 2.4656 -5.8008 8.1557 49 1 2.8183 -3.1012 3.3303 50 1 2.2176 -1.4780 3.7878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081098557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:36 Heat of formation + Delta-G solvation = -44.203627 kcal Electronic energy + Delta-G solvation = -30887.624001 eV Core-core repulsion = 26879.597797 eV Total energy + Delta-G solvation = -4008.026204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.17595 -40.81183 -39.61780 -38.65656 -36.87783 -35.85958 -33.93921 -32.71990 -31.74409 -30.03562 -29.12171 -28.33527 -28.24746 -27.09301 -25.73242 -24.52143 -23.55352 -22.55698 -21.88896 -21.06293 -19.62017 -19.29233 -18.36351 -17.95565 -17.44186 -17.18686 -16.71384 -16.51552 -16.14519 -15.85683 -15.67746 -15.44749 -15.06048 -14.81806 -14.62687 -14.52379 -14.43668 -14.25963 -14.00510 -13.94843 -13.48315 -13.44063 -13.18032 -13.09323 -13.05657 -13.00662 -12.73731 -12.61722 -12.57963 -12.53670 -12.24855 -12.00660 -11.95217 -11.84833 -11.79312 -11.73685 -11.56255 -11.05184 -10.36293 -9.90384 -9.73022 -9.55593 -9.03766 -7.96388 -5.26079 -0.12757 0.49295 0.57127 1.46338 1.48711 1.49845 1.54986 1.83916 2.52791 2.76174 2.90982 3.32490 3.44157 3.55464 3.68774 3.78180 3.85231 3.87580 4.04869 4.10051 4.20267 4.24327 4.25465 4.27806 4.34322 4.48343 4.59900 4.65562 4.66445 4.72058 4.78083 4.83884 4.84098 4.87694 4.91086 4.92172 4.92993 4.99666 5.15535 5.18447 5.20150 5.24423 5.31884 5.34278 5.49787 5.63018 5.67239 5.77107 5.85209 6.17935 6.20119 6.24060 6.73930 7.32199 8.00332 8.26300 9.25910 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007806 B = 0.004092 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3585.910636 B = 6841.223007 C = 9603.852349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.356 3.644 6 O -0.430 6.430 7 C 0.482 3.518 8 O -0.525 6.525 9 N -0.588 5.588 10 C 0.120 3.880 11 C -0.062 4.062 12 H 0.090 0.910 13 C -0.069 4.069 14 C -0.127 4.127 15 C -0.124 4.124 16 C -0.130 4.130 17 C -0.126 4.126 18 C -0.125 4.125 19 C 0.182 3.818 20 H 0.063 0.937 21 N -0.714 5.714 22 C -0.244 4.244 23 H 0.073 0.927 24 C -0.062 4.062 25 N -0.962 5.962 26 Si 0.965 3.035 27 H -0.280 1.280 28 H -0.295 1.295 29 H -0.279 1.279 30 C 0.084 3.916 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.120 0.880 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.139 0.861 46 H 0.121 0.879 47 H 0.378 0.622 48 H 0.252 0.748 49 H 0.059 0.941 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.920 11.971 -14.007 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.093 4.093 3 C -0.196 4.196 4 C -0.196 4.196 5 C 0.226 3.774 6 O -0.300 6.300 7 C 0.268 3.732 8 O -0.403 6.403 9 N -0.322 5.322 10 C -0.001 4.001 11 C -0.082 4.082 12 H 0.109 0.891 13 C -0.070 4.070 14 C -0.145 4.145 15 C -0.142 4.142 16 C -0.147 4.147 17 C -0.143 4.143 18 C -0.143 4.143 19 C 0.070 3.930 20 H 0.081 0.919 21 N -0.353 5.353 22 C -0.376 4.376 23 H 0.091 0.909 24 C -0.255 4.255 25 N -0.612 5.612 26 Si 0.794 3.206 27 H -0.206 1.206 28 H -0.221 1.221 29 H -0.205 1.205 30 C -0.041 4.041 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.138 0.862 43 H 0.159 0.841 44 H 0.163 0.837 45 H 0.157 0.843 46 H 0.139 0.861 47 H 0.211 0.789 48 H 0.061 0.939 49 H 0.077 0.923 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.744 12.069 -13.924 19.301 hybrid contribution -0.708 -0.815 1.068 1.518 sum 5.037 11.254 -12.857 17.813 Atomic orbital electron populations 1.21788 0.91157 1.02659 1.03429 1.21057 0.98052 0.97713 0.92449 1.21892 1.02285 0.91761 1.03674 1.21893 1.02267 0.99911 0.95544 1.25364 0.87744 0.76537 0.87735 1.90455 1.58810 1.36675 1.44070 1.20982 0.91543 0.79640 0.81055 1.90669 1.57441 1.47863 1.44357 1.48679 1.09157 1.53006 1.21404 1.22144 0.81408 1.01051 0.95540 1.21387 0.93658 1.00306 0.92808 0.89143 1.19530 0.95078 0.94007 0.98355 1.21092 0.99028 0.94731 0.99614 1.21385 0.94757 1.00906 0.97132 1.21451 0.99763 0.93379 1.00137 1.21399 0.98494 0.96442 0.98003 1.21221 0.95125 0.99670 0.98278 1.21493 0.90268 0.92801 0.88399 0.91916 1.42276 1.47863 1.09897 1.35271 1.19481 1.14390 0.96037 1.07679 0.90910 1.25426 1.02454 0.95689 1.01936 1.69782 1.47700 1.02623 1.41093 0.85349 0.79423 0.76522 0.79299 1.20628 1.22069 1.20476 1.23438 0.95224 0.97776 0.87698 0.92753 0.88709 0.92834 0.91584 0.88569 0.92695 0.92794 0.88540 0.91606 0.89820 0.89909 0.86220 0.84062 0.83715 0.84304 0.86091 0.78899 0.93929 0.92261 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 7.76 71.98 0.56 -1.87 16 2 C -0.09 -1.89 0.76 -52.93 -0.04 -1.93 16 3 C -0.14 -2.48 8.29 71.98 0.60 -1.88 16 4 C -0.14 -2.50 8.29 71.98 0.60 -1.91 16 5 C 0.36 10.10 6.00 28.60 0.17 10.27 16 6 O -0.43 -14.43 13.39 -1.50 -0.02 -14.45 16 7 C 0.48 14.77 7.58 87.16 0.66 15.43 16 8 O -0.53 -16.39 13.71 -3.28 -0.05 -16.44 16 9 N -0.59 -18.77 3.33 -813.75 -2.71 -21.48 16 10 C 0.12 3.47 6.33 86.73 0.55 4.02 16 11 C -0.06 -1.98 2.81 -10.35 -0.03 -2.01 16 12 H 0.09 2.95 7.81 -2.39 -0.02 2.93 16 13 C -0.07 -2.13 4.95 -19.87 -0.10 -2.23 16 14 C -0.13 -3.60 8.11 22.27 0.18 -3.42 16 15 C -0.12 -3.05 10.05 22.27 0.22 -2.82 16 16 C -0.13 -3.03 10.05 22.27 0.22 -2.80 16 17 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 18 C -0.12 -3.70 9.69 22.27 0.22 -3.49 16 19 C 0.18 7.02 3.09 46.38 0.14 7.16 16 20 H 0.06 2.51 7.19 -2.38 -0.02 2.49 16 21 N -0.71 -34.62 5.26 -316.39 -1.67 -36.28 16 22 C -0.24 -13.22 9.97 84.03 0.84 -12.38 16 23 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 24 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 25 N -0.96 -57.33 13.06 21.65 0.28 -57.05 16 26 Si 0.96 45.67 29.55 68.60 2.03 47.70 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 28 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 30 C 0.08 3.11 5.76 86.84 0.50 3.61 16 31 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 34 H 0.07 1.38 6.43 -2.39 -0.02 1.37 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.06 1.39 6.43 -2.39 -0.02 1.38 16 40 H 0.08 2.29 6.64 -2.39 -0.02 2.28 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.12 3.25 7.29 -2.91 -0.02 3.23 16 43 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 44 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 45 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 46 H 0.12 3.46 7.98 -2.91 -0.02 3.44 16 47 H 0.38 19.58 7.73 -92.71 -0.72 18.87 16 48 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 49 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 50 H 0.08 3.11 6.17 -2.39 -0.01 3.10 16 Total: -1.00 -65.03 401.81 4.08 -60.95 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: 0.22 Total: 39.29 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 5.98 Total: -2.24 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -4.09 Total: -114.81 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.07 Total: -30.89 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -65.03 4.08 -60.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081098557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.745 kcal (2) G-P(sol) polarization free energy of solvation -65.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds