Wall clock time and date at job start Wed Apr 1 2020 05:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00015 * 2 1 4 4 O 1.42899 * 109.47235 * 134.99518 * 3 2 1 5 5 C 1.35657 * 117.00158 * 179.97438 * 4 3 2 6 6 C 1.38710 * 120.14880 * 0.02562 * 5 4 3 7 7 C 1.38057 * 120.08699 * 180.02562 * 6 5 4 8 8 C 1.38541 * 120.38738 * 359.97438 * 7 6 5 9 9 C 1.37793 * 120.30050 * 359.73945 * 8 7 6 10 10 C 1.39705 * 119.90907 * 0.53968 * 9 8 7 11 11 C 1.47530 * 120.19403 * 179.74074 * 10 9 8 12 12 O 1.21592 * 120.00123 * 179.71968 * 11 10 9 13 13 N 1.34774 * 120.00153 * 359.72118 * 11 10 9 14 14 C 1.46499 * 120.00572 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.77855 * 323.21952 * 14 13 11 16 16 C 1.55152 * 110.71884 * 86.45128 * 14 13 11 17 17 C 1.54910 * 101.57974 * 153.86905 * 16 14 13 18 18 N 1.47420 * 104.83395 * 322.99000 * 17 16 14 19 19 C 1.36937 * 125.65225 * 204.09161 * 18 17 16 20 20 H 1.08001 * 119.99698 * 317.97374 * 19 18 17 21 21 C 1.38811 * 120.00174 * 137.97368 * 19 18 17 22 22 N 1.31612 * 120.00077 * 165.29696 * 21 19 18 23 23 Si 1.86795 * 119.99943 * 345.29056 * 21 19 18 24 24 H 1.48500 * 109.46981 * 90.64905 * 23 21 19 25 25 H 1.48504 * 109.47384 * 330.65296 * 23 21 19 26 26 H 1.48495 * 109.47247 * 210.65317 * 23 21 19 27 27 C 1.47024 * 108.70006 * 24.35754 * 18 17 16 28 28 H 1.08996 * 109.88016 * 239.29143 * 27 18 17 29 29 C 1.53005 * 109.88250 * 118.12808 * 27 18 17 30 30 C 1.53005 * 109.47168 * 65.98969 * 29 27 18 31 31 H 1.07999 * 119.99826 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.00173 * 180.02562 * 1 2 3 33 33 H 1.08002 * 120.00191 * 179.97438 * 2 1 3 34 34 H 1.08999 * 109.47200 * 14.99457 * 3 2 1 35 35 H 1.09000 * 109.46796 * 254.99619 * 3 2 1 36 36 H 1.08001 * 119.95541 * 359.97438 * 6 5 4 37 37 H 1.07996 * 119.80474 * 180.02562 * 7 6 5 38 38 H 1.07996 * 119.85065 * 180.02562 * 8 7 6 39 39 H 1.08006 * 120.04327 * 180.27614 * 9 8 7 40 40 H 0.97005 * 119.99854 * 0.02562 * 13 11 10 41 41 H 1.09004 * 111.00712 * 35.79711 * 16 14 13 42 42 H 1.08998 * 111.00975 * 271.94255 * 16 14 13 43 43 H 1.09004 * 110.36479 * 204.15215 * 17 16 14 44 44 H 1.08999 * 110.36730 * 81.83661 * 17 16 14 45 45 H 0.97006 * 120.00357 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.47011 * 185.98878 * 29 27 18 47 47 H 1.09003 * 109.47077 * 305.99628 * 29 27 18 48 48 H 1.09003 * 109.46625 * 52.86045 * 30 29 27 49 49 H 1.08999 * 109.47332 * 172.85736 * 30 29 27 50 50 H 1.08994 * 109.47114 * 292.86209 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9082 2.3430 1.0781 6 6 3.6599 3.4654 0.3017 7 6 4.4565 4.5856 0.4299 8 6 5.5073 4.5988 1.3327 9 6 5.7647 3.4948 2.1161 10 6 4.9701 2.3524 1.9924 11 6 5.2437 1.1648 2.8239 12 8 4.5467 0.1742 2.7171 13 7 6.2660 1.1779 3.7021 14 6 6.5373 -0.0011 4.5282 15 1 5.6079 -0.4844 4.8294 16 6 7.4561 -0.9992 3.7754 17 6 8.1432 -1.7371 4.9514 18 7 8.3562 -0.6986 5.9758 19 6 9.3055 -0.7331 6.9621 20 1 9.4973 -1.6528 7.4950 21 6 10.0213 0.4137 7.2770 22 7 10.7142 0.4709 8.3945 23 14 10.0012 1.8758 6.1146 24 1 8.8872 2.7860 6.4833 25 1 9.8096 1.3982 4.7216 26 1 11.2905 2.6056 6.2148 27 6 7.3763 0.3774 5.7670 28 1 7.8934 1.3201 5.5883 29 6 6.4706 0.5018 6.9940 30 6 7.2977 0.9704 8.1929 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3855 2.1161 0.2659 35 1 2.4755 1.4867 -0.9926 36 1 2.8428 3.4625 -0.4046 37 1 4.2588 5.4571 -0.1765 38 1 6.1247 5.4799 1.4262 39 1 6.5822 3.5112 2.8217 40 1 6.8217 1.9684 3.7876 41 1 8.1883 -0.4715 3.1641 42 1 6.8694 -1.6901 3.1700 43 1 9.0974 -2.1554 4.6312 44 1 7.4940 -2.5231 5.3372 45 1 11.2141 1.2725 8.6147 46 1 5.6818 1.2262 6.7913 47 1 6.0253 -0.4678 7.2166 48 1 7.8441 1.8750 7.9260 49 1 6.6344 1.1808 9.0319 50 1 8.0037 0.1893 8.4748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087628366.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:19 Heat of formation + Delta-G solvation = 7.587492 kcal Electronic energy + Delta-G solvation = -30815.219791 eV Core-core repulsion = 26809.439419 eV Total energy + Delta-G solvation = -4005.780372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.74334 -39.36202 -37.98439 -37.46183 -34.42932 -34.05088 -32.61100 -31.98134 -31.39768 -30.19585 -29.21887 -27.08153 -26.73177 -24.66314 -23.75136 -22.39762 -21.64071 -20.97927 -20.46302 -20.14982 -19.54769 -18.61727 -17.38303 -16.78956 -16.52851 -16.28282 -15.84983 -15.31670 -14.97532 -14.94676 -14.82031 -14.49933 -14.24915 -13.59407 -13.50830 -13.34267 -13.10170 -13.02128 -12.93931 -12.66838 -12.29298 -12.03674 -11.97163 -11.78635 -11.66381 -11.50394 -11.31286 -11.24299 -11.17803 -10.89748 -10.53057 -10.42768 -10.09650 -10.01165 -9.85336 -9.70231 -9.58785 -9.44429 -9.32831 -8.69517 -8.43556 -8.36643 -6.72489 -6.03727 -3.49969 0.67294 1.13196 1.73620 2.91739 3.08047 3.24348 3.32423 3.39558 3.43739 3.74197 4.36626 4.45923 4.47472 4.57489 4.69404 4.77524 4.80080 4.96713 5.00894 5.09401 5.12724 5.16061 5.26415 5.35628 5.40061 5.50548 5.53968 5.68642 5.87743 5.91436 5.97799 6.01712 6.09057 6.15426 6.20604 6.23944 6.24872 6.32461 6.42397 6.45497 6.56267 6.68003 6.74596 6.82438 6.89794 6.93741 7.15243 7.18637 7.69828 7.74075 8.00044 8.33046 8.46229 8.84239 9.62302 10.25346 11.11028 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.003091 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.163512 B = 9056.977057 C =10156.512190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.149 4.149 3 C 0.080 3.920 4 O -0.272 6.272 5 C 0.186 3.814 6 C -0.223 4.223 7 C -0.055 4.055 8 C -0.167 4.167 9 C -0.048 4.048 10 C -0.167 4.167 11 C 0.559 3.441 12 O -0.520 6.520 13 N -0.717 5.717 14 C 0.137 3.863 15 H 0.097 0.903 16 C -0.145 4.145 17 C 0.130 3.870 18 N -0.600 5.600 19 C -0.245 4.245 20 H 0.081 0.919 21 C 0.048 3.952 22 N -0.900 5.900 23 Si 0.879 3.121 24 H -0.279 1.279 25 H -0.270 1.270 26 H -0.303 1.303 27 C 0.144 3.856 28 H 0.035 0.965 29 C -0.118 4.118 30 C -0.158 4.158 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.395 0.605 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.029 0.971 45 H 0.265 0.735 46 H 0.039 0.961 47 H 0.058 0.942 48 H 0.041 0.959 49 H 0.025 0.975 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.167 7.610 -18.060 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.167 4.167 3 C 0.005 3.995 4 O -0.183 6.183 5 C 0.137 3.863 6 C -0.242 4.242 7 C -0.074 4.074 8 C -0.185 4.185 9 C -0.066 4.066 10 C -0.171 4.171 11 C 0.345 3.655 12 O -0.396 6.396 13 N -0.369 5.369 14 C 0.033 3.967 15 H 0.115 0.885 16 C -0.184 4.184 17 C 0.005 3.995 18 N -0.326 5.326 19 C -0.373 4.373 20 H 0.099 0.901 21 C -0.153 4.153 22 N -0.541 5.541 23 Si 0.710 3.290 24 H -0.206 1.206 25 H -0.196 1.196 26 H -0.231 1.231 27 C 0.038 3.962 28 H 0.053 0.947 29 C -0.157 4.157 30 C -0.215 4.215 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.230 0.770 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.075 0.925 46 H 0.057 0.943 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.044 0.956 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.476 6.747 -17.836 25.201 hybrid contribution 0.283 1.699 -0.718 1.866 sum -16.193 8.445 -18.555 26.035 Atomic orbital electron populations 1.23844 0.95355 1.02454 0.99584 1.22659 0.95594 0.97906 1.00503 1.21924 0.88195 0.97118 0.92262 1.86418 1.40825 1.34117 1.56990 1.18994 0.89165 0.85956 0.92162 1.21230 1.04437 0.94274 1.04281 1.21102 0.93181 0.97044 0.96034 1.21001 0.99817 0.99099 0.98575 1.21262 0.96931 0.91433 0.97016 1.19457 0.99071 0.96569 1.02001 1.17917 0.80538 0.87078 0.79923 1.90806 1.48022 1.33708 1.67074 1.45981 1.32520 1.18019 1.40350 1.22061 0.98850 0.85348 0.90472 0.88522 1.23171 0.98450 0.98522 0.98261 1.21775 0.97855 0.92226 0.87685 1.44542 1.34850 1.20514 1.32728 1.18375 1.10685 0.98518 1.09762 0.90107 1.25510 0.95283 0.98286 0.96260 1.69781 1.33077 1.28845 1.22351 0.86996 0.75838 0.83170 0.83037 1.20648 1.19580 1.23097 1.21407 0.89817 0.93368 0.91610 0.94746 1.21815 0.97153 1.00006 0.96748 1.22102 1.00220 1.03407 0.95726 0.88408 0.87406 0.85966 0.91512 0.91036 0.84957 0.85355 0.85182 0.84940 0.77039 0.91509 0.91258 0.92937 0.95286 0.92548 0.94272 0.92359 0.94012 0.95613 0.87468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 14.31 29.02 0.42 -0.86 16 2 C -0.15 -1.37 9.89 -36.03 -0.36 -1.72 16 3 C 0.08 0.75 5.15 36.01 0.19 0.93 16 4 O -0.27 -3.77 8.19 -40.55 -0.33 -4.10 16 5 C 0.19 2.40 6.70 -38.70 -0.26 2.14 16 6 C -0.22 -2.14 9.03 -39.47 -0.36 -2.49 16 7 C -0.06 -0.46 10.03 -39.54 -0.40 -0.86 16 8 C -0.17 -1.53 10.02 -39.63 -0.40 -1.93 16 9 C -0.05 -0.54 9.54 -39.20 -0.37 -0.91 16 10 C -0.17 -2.34 5.89 -104.85 -0.62 -2.95 16 11 C 0.56 9.41 7.76 -12.47 -0.10 9.32 16 12 O -0.52 -10.28 14.89 -16.59 -0.25 -10.53 16 13 N -0.72 -11.86 5.16 -53.07 -0.27 -12.13 16 14 C 0.14 2.55 2.76 -66.10 -0.18 2.36 16 15 H 0.10 1.85 7.40 -51.93 -0.38 1.47 16 16 C -0.14 -2.64 6.77 -24.58 -0.17 -2.80 16 17 C 0.13 2.62 7.23 -2.53 -0.02 2.60 16 18 N -0.60 -13.99 2.56 -162.57 -0.42 -14.40 16 19 C -0.25 -6.58 8.23 -15.06 -0.12 -6.71 16 20 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 21 C 0.05 1.32 3.61 -17.43 -0.06 1.26 16 22 N -0.90 -26.12 13.97 55.49 0.78 -25.35 16 23 Si 0.88 21.53 23.28 -169.99 -3.96 17.58 16 24 H -0.28 -6.56 6.09 56.52 0.34 -6.22 16 25 H -0.27 -6.50 7.10 56.52 0.40 -6.10 16 26 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 27 C 0.14 3.03 2.16 -66.95 -0.14 2.89 16 28 H 0.04 0.78 3.34 -51.93 -0.17 0.60 16 29 C -0.12 -2.41 5.46 -26.73 -0.15 -2.55 16 30 C -0.16 -3.51 8.30 37.16 0.31 -3.20 16 31 H 0.10 0.58 7.90 -52.49 -0.41 0.16 16 32 H 0.11 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.07 0.51 7.38 -51.93 -0.38 0.13 16 35 H 0.07 0.54 7.66 -51.93 -0.40 0.14 16 36 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.13 1.34 6.41 -52.48 -0.34 1.00 16 40 H 0.39 5.90 6.35 -40.82 -0.26 5.64 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.04 0.97 5.51 -51.93 -0.29 0.68 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.11 2.74 5.13 -51.93 -0.27 2.47 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -32.11 390.17 -8.86 -40.97 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.50 Total: 7.58 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.79 Total: -5.50 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.08 Total: -51.88 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.58 Total: -14.63 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -3.96 Total: 17.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.11 -8.86 -40.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087628366.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.556 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds