Wall clock time and date at job start Wed Apr 1 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00015 * 2 1 4 4 O 1.42899 * 109.47235 * 134.99518 * 3 2 1 5 5 C 1.35657 * 117.00158 * 179.97438 * 4 3 2 6 6 C 1.38710 * 120.14880 * 0.02562 * 5 4 3 7 7 C 1.38057 * 120.08699 * 180.02562 * 6 5 4 8 8 C 1.38541 * 120.38738 * 359.97438 * 7 6 5 9 9 C 1.37793 * 120.30050 * 359.73945 * 8 7 6 10 10 C 1.39705 * 119.90907 * 0.53968 * 9 8 7 11 11 C 1.47530 * 120.19403 * 179.74074 * 10 9 8 12 12 O 1.21592 * 120.00123 * 179.71968 * 11 10 9 13 13 N 1.34774 * 120.00153 * 359.72118 * 11 10 9 14 14 C 1.46499 * 120.00572 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.77855 * 323.21952 * 14 13 11 16 16 C 1.55152 * 110.71884 * 86.45128 * 14 13 11 17 17 C 1.54910 * 101.57974 * 153.86905 * 16 14 13 18 18 N 1.47420 * 104.83395 * 322.99000 * 17 16 14 19 19 C 1.36937 * 125.65225 * 204.09161 * 18 17 16 20 20 H 1.08001 * 119.99698 * 317.97374 * 19 18 17 21 21 C 1.38811 * 120.00174 * 137.97368 * 19 18 17 22 22 N 1.31612 * 120.00077 * 165.29696 * 21 19 18 23 23 Si 1.86795 * 119.99943 * 345.29056 * 21 19 18 24 24 H 1.48500 * 109.46981 * 90.64905 * 23 21 19 25 25 H 1.48504 * 109.47384 * 330.65296 * 23 21 19 26 26 H 1.48495 * 109.47247 * 210.65317 * 23 21 19 27 27 C 1.47024 * 108.70006 * 24.35754 * 18 17 16 28 28 H 1.08996 * 109.88016 * 239.29143 * 27 18 17 29 29 C 1.53005 * 109.88250 * 118.12808 * 27 18 17 30 30 C 1.53005 * 109.47168 * 65.98969 * 29 27 18 31 31 H 1.07999 * 119.99826 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.00173 * 180.02562 * 1 2 3 33 33 H 1.08002 * 120.00191 * 179.97438 * 2 1 3 34 34 H 1.08999 * 109.47200 * 14.99457 * 3 2 1 35 35 H 1.09000 * 109.46796 * 254.99619 * 3 2 1 36 36 H 1.08001 * 119.95541 * 359.97438 * 6 5 4 37 37 H 1.07996 * 119.80474 * 180.02562 * 7 6 5 38 38 H 1.07996 * 119.85065 * 180.02562 * 8 7 6 39 39 H 1.08006 * 120.04327 * 180.27614 * 9 8 7 40 40 H 0.97005 * 119.99854 * 0.02562 * 13 11 10 41 41 H 1.09004 * 111.00712 * 35.79711 * 16 14 13 42 42 H 1.08998 * 111.00975 * 271.94255 * 16 14 13 43 43 H 1.09004 * 110.36479 * 204.15215 * 17 16 14 44 44 H 1.08999 * 110.36730 * 81.83661 * 17 16 14 45 45 H 0.97006 * 120.00357 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.47011 * 185.98878 * 29 27 18 47 47 H 1.09003 * 109.47077 * 305.99628 * 29 27 18 48 48 H 1.09003 * 109.46625 * 52.86045 * 30 29 27 49 49 H 1.08999 * 109.47332 * 172.85736 * 30 29 27 50 50 H 1.08994 * 109.47114 * 292.86209 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9082 2.3430 1.0781 6 6 3.6599 3.4654 0.3017 7 6 4.4565 4.5856 0.4299 8 6 5.5073 4.5988 1.3327 9 6 5.7647 3.4948 2.1161 10 6 4.9701 2.3524 1.9924 11 6 5.2437 1.1648 2.8239 12 8 4.5467 0.1742 2.7171 13 7 6.2660 1.1779 3.7021 14 6 6.5373 -0.0011 4.5282 15 1 5.6079 -0.4844 4.8294 16 6 7.4561 -0.9992 3.7754 17 6 8.1432 -1.7371 4.9514 18 7 8.3562 -0.6986 5.9758 19 6 9.3055 -0.7331 6.9621 20 1 9.4973 -1.6528 7.4950 21 6 10.0213 0.4137 7.2770 22 7 10.7142 0.4709 8.3945 23 14 10.0012 1.8758 6.1146 24 1 8.8872 2.7860 6.4833 25 1 9.8096 1.3982 4.7216 26 1 11.2905 2.6056 6.2148 27 6 7.3763 0.3774 5.7670 28 1 7.8934 1.3201 5.5883 29 6 6.4706 0.5018 6.9940 30 6 7.2977 0.9704 8.1929 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3855 2.1161 0.2659 35 1 2.4755 1.4867 -0.9926 36 1 2.8428 3.4625 -0.4046 37 1 4.2588 5.4571 -0.1765 38 1 6.1247 5.4799 1.4262 39 1 6.5822 3.5112 2.8217 40 1 6.8217 1.9684 3.7876 41 1 8.1883 -0.4715 3.1641 42 1 6.8694 -1.6901 3.1700 43 1 9.0974 -2.1554 4.6312 44 1 7.4940 -2.5231 5.3372 45 1 11.2141 1.2725 8.6147 46 1 5.6818 1.2262 6.7913 47 1 6.0253 -0.4678 7.2166 48 1 7.8441 1.8750 7.9260 49 1 6.6344 1.1808 9.0319 50 1 8.0037 0.1893 8.4748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087628366.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:13 Heat of formation + Delta-G solvation = -11.508580 kcal Electronic energy + Delta-G solvation = -30816.047859 eV Core-core repulsion = 26809.439419 eV Total energy + Delta-G solvation = -4006.608440 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.70364 -40.64634 -39.33230 -38.40301 -35.70147 -34.98852 -34.30279 -33.77651 -32.47791 -30.96657 -30.86719 -28.58929 -27.53831 -26.35394 -24.88618 -23.44902 -23.12286 -22.20900 -21.98863 -21.27532 -20.73862 -19.54744 -18.69274 -18.25508 -17.83959 -17.28885 -16.99220 -16.63603 -16.16634 -15.99374 -15.87159 -15.63618 -15.36858 -15.19016 -15.02954 -14.67147 -14.46838 -14.26066 -14.06012 -13.74703 -13.65038 -13.55904 -13.38443 -13.14338 -12.99345 -12.76406 -12.59455 -12.37570 -12.33181 -12.19233 -12.11680 -11.93364 -11.89987 -11.70828 -11.60281 -11.25843 -10.87565 -10.45275 -10.41620 -10.20050 -9.98274 -9.25281 -8.66318 -8.16202 -5.60815 -0.16110 0.38219 1.11364 1.28247 1.38955 1.48860 1.88390 2.05036 2.37048 2.43278 2.83102 3.11511 3.33412 3.61132 3.67056 3.74759 3.80962 3.88028 4.01818 4.06508 4.09626 4.17725 4.29360 4.31766 4.36351 4.37406 4.47972 4.49415 4.53629 4.57915 4.70970 4.81259 4.88905 4.94072 4.98819 5.00810 5.06756 5.13874 5.17115 5.25644 5.29926 5.35251 5.44325 5.53129 5.59337 5.63356 5.75826 5.78537 5.99919 6.21317 6.36896 6.52694 6.85023 7.21562 7.54369 8.23520 9.02161 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.003091 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.163512 B = 9056.977057 C =10156.512190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.180 4.180 3 C 0.076 3.924 4 O -0.307 6.307 5 C 0.166 3.834 6 C -0.221 4.221 7 C -0.043 4.043 8 C -0.165 4.165 9 C -0.054 4.054 10 C -0.201 4.201 11 C 0.558 3.442 12 O -0.558 6.558 13 N -0.713 5.713 14 C 0.149 3.851 15 H 0.091 0.909 16 C -0.132 4.132 17 C 0.127 3.873 18 N -0.613 5.613 19 C -0.235 4.235 20 H 0.042 0.958 21 C 0.008 3.992 22 N -0.941 5.941 23 Si 0.929 3.071 24 H -0.262 1.262 25 H -0.261 1.261 26 H -0.311 1.311 27 C 0.143 3.857 28 H 0.030 0.970 29 C -0.115 4.115 30 C -0.150 4.150 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.158 0.842 39 H 0.139 0.861 40 H 0.403 0.597 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.050 0.950 44 H 0.036 0.964 45 H 0.263 0.737 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.030 0.970 49 H 0.046 0.954 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.262 10.536 -20.836 29.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.198 4.198 3 C 0.002 3.998 4 O -0.220 6.220 5 C 0.118 3.882 6 C -0.239 4.239 7 C -0.060 4.060 8 C -0.183 4.183 9 C -0.073 4.073 10 C -0.205 4.205 11 C 0.348 3.652 12 O -0.437 6.437 13 N -0.365 5.365 14 C 0.043 3.957 15 H 0.109 0.891 16 C -0.171 4.171 17 C 0.002 3.998 18 N -0.340 5.340 19 C -0.364 4.364 20 H 0.060 0.940 21 C -0.190 4.190 22 N -0.585 5.585 23 Si 0.758 3.242 24 H -0.188 1.188 25 H -0.186 1.186 26 H -0.240 1.240 27 C 0.037 3.963 28 H 0.047 0.953 29 C -0.154 4.154 30 C -0.207 4.207 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.176 0.824 37 H 0.184 0.816 38 H 0.176 0.824 39 H 0.157 0.843 40 H 0.240 0.760 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.049 0.951 49 H 0.065 0.935 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.592 9.683 -20.640 29.419 hybrid contribution 0.831 0.741 0.129 1.120 sum -17.761 10.424 -20.511 29.066 Atomic orbital electron populations 1.24085 0.94678 1.03823 0.96777 1.22675 0.96406 0.97514 1.03182 1.22145 0.87704 0.97613 0.92314 1.86369 1.41980 1.35245 1.58380 1.19297 0.89164 0.86863 0.92838 1.21558 1.05194 0.93362 1.03806 1.21601 0.91704 0.97582 0.95162 1.21384 1.00133 0.99082 0.97698 1.21420 0.96790 0.91355 0.97713 1.19384 1.01301 0.96394 1.03373 1.18410 0.79597 0.87644 0.79572 1.90776 1.49264 1.35396 1.68281 1.45865 1.32888 1.17634 1.40140 1.21772 0.98012 0.86146 0.89749 0.89108 1.23063 0.98252 0.98425 0.97384 1.21859 0.98215 0.91918 0.87818 1.44604 1.34919 1.21786 1.32730 1.18098 1.11327 0.97151 1.09803 0.93993 1.25935 0.95271 1.00657 0.97182 1.69900 1.34760 1.29685 1.24108 0.86186 0.75866 0.80624 0.81564 1.18781 1.18587 1.23959 1.21447 0.89627 0.92194 0.93029 0.95314 1.21787 0.97319 1.00626 0.95676 1.21944 0.99950 1.01482 0.97346 0.86553 0.86454 0.87808 0.89677 0.89503 0.82353 0.81557 0.82437 0.84322 0.76010 0.91416 0.89965 0.93124 0.94591 0.92740 0.91812 0.92439 0.95133 0.93514 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 14.31 67.78 0.97 -1.04 16 2 C -0.18 -3.22 9.89 25.65 0.25 -2.96 16 3 C 0.08 1.33 5.15 71.24 0.37 1.69 16 4 O -0.31 -8.40 8.19 -68.81 -0.56 -8.96 16 5 C 0.17 4.07 6.70 22.84 0.15 4.22 16 6 C -0.22 -3.48 9.03 22.34 0.20 -3.28 16 7 C -0.04 -0.52 10.03 22.30 0.22 -0.29 16 8 C -0.17 -2.36 10.02 22.24 0.22 -2.14 16 9 C -0.05 -1.09 9.54 22.52 0.21 -0.88 16 10 C -0.20 -5.38 5.89 -20.01 -0.12 -5.50 16 11 C 0.56 18.57 7.76 86.69 0.67 19.24 16 12 O -0.56 -22.31 14.89 16.91 0.25 -22.06 16 13 N -0.71 -22.74 5.16 -440.08 -2.27 -25.01 16 14 C 0.15 5.37 2.76 46.18 0.13 5.49 16 15 H 0.09 3.42 7.40 -2.39 -0.02 3.40 16 16 C -0.13 -4.68 6.77 31.98 0.22 -4.46 16 17 C 0.13 5.09 7.23 86.86 0.63 5.72 16 18 N -0.61 -28.73 2.56 -668.25 -1.71 -30.45 16 19 C -0.23 -12.96 8.23 84.03 0.69 -12.27 16 20 H 0.04 2.61 8.06 -2.91 -0.02 2.58 16 21 C 0.01 0.42 3.61 84.86 0.31 0.73 16 22 N -0.94 -56.37 13.97 21.65 0.30 -56.07 16 23 Si 0.93 44.27 23.28 68.60 1.60 45.87 16 24 H -0.26 -11.64 6.09 99.48 0.61 -11.03 16 25 H -0.26 -11.94 7.10 99.48 0.71 -11.23 16 26 H -0.31 -15.17 7.11 99.48 0.71 -14.46 16 27 C 0.14 5.88 2.16 45.34 0.10 5.98 16 28 H 0.03 1.25 3.34 -2.39 -0.01 1.24 16 29 C -0.11 -4.58 5.46 30.60 0.17 -4.41 16 30 C -0.15 -6.64 8.30 71.98 0.60 -6.04 16 31 H 0.12 1.04 7.90 -2.91 -0.02 1.02 16 32 H 0.12 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.10 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.09 1.09 7.38 -2.39 -0.02 1.08 16 35 H 0.09 1.15 7.66 -2.39 -0.02 1.13 16 36 H 0.16 1.55 6.30 -2.91 -0.02 1.54 16 37 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 38 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 39 H 0.14 2.48 6.41 -2.91 -0.02 2.46 16 40 H 0.40 11.36 6.35 -92.70 -0.59 10.77 16 41 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 46 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.03 1.38 5.51 -2.39 -0.01 1.37 16 49 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.07 3.67 5.13 -2.39 -0.01 3.66 16 Total: -1.00 -72.69 390.17 3.86 -68.83 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.26 Total: 28.06 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 5.99 Total: -0.20 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -3.68 Total: -111.53 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.31 Total: -31.03 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.60 Total: 45.87 kcal Total: -72.69 3.86 -68.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087628366.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.325 kcal (2) G-P(sol) polarization free energy of solvation -72.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds