Wall clock time and date at job start Wed Apr 1 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47093 * 2 1 4 4 H 1.09004 * 109.87311 * 301.83417 * 3 2 1 5 5 C 1.54325 * 109.88063 * 180.82132 * 3 2 1 6 6 H 1.09002 * 110.72100 * 336.77154 * 5 3 2 7 7 N 1.46494 * 110.72484 * 99.87092 * 5 3 2 8 8 C 1.34775 * 120.00600 * 204.99945 * 7 5 3 9 9 O 1.21557 * 119.99435 * 359.97438 * 8 7 5 10 10 C 1.47844 * 120.00594 * 179.97438 * 8 7 5 11 11 C 1.39457 * 120.01101 * 0.02562 * 10 8 7 12 12 C 1.37936 * 119.69771 * 180.02562 * 11 10 8 13 13 C 1.38209 * 120.05841 * 0.10566 * 12 11 10 14 14 C 1.38758 * 120.61275 * 359.95977 * 13 12 11 15 15 C 1.37663 * 119.86085 * 359.87913 * 14 13 12 16 16 C 1.50726 * 121.43078 * 180.24601 * 15 14 13 17 17 C 1.52975 * 109.76493 * 343.13876 * 16 15 14 18 18 O 1.43214 * 108.44298 * 49.13151 * 17 16 15 19 19 C 1.42709 * 113.12765 * 289.35411 * 18 17 16 20 20 C 1.55164 * 102.94074 * 218.23404 * 5 3 2 21 21 C 1.54910 * 101.58126 * 35.49939 * 20 5 3 22 22 N 1.47018 * 110.01317 * 62.93401 * 3 2 1 23 23 C 1.36937 * 125.64856 * 298.46493 * 22 3 2 24 24 H 1.07999 * 119.99938 * 340.67219 * 23 22 3 25 25 C 1.38813 * 120.00112 * 160.68077 * 23 22 3 26 26 N 1.31620 * 120.00019 * 159.91665 * 25 23 22 27 27 Si 1.86802 * 119.99971 * 339.91242 * 25 23 22 28 28 H 1.48505 * 109.46788 * 84.86848 * 27 25 23 29 29 H 1.48500 * 109.47295 * 204.87051 * 27 25 23 30 30 H 1.48500 * 109.46864 * 324.87268 * 27 25 23 31 31 H 1.08994 * 109.46877 * 292.10308 * 1 2 3 32 32 H 1.08996 * 109.46980 * 52.09946 * 1 2 3 33 33 H 1.08998 * 109.47055 * 172.10394 * 1 2 3 34 34 H 1.09001 * 109.47216 * 239.99561 * 2 1 3 35 35 H 1.08999 * 109.46948 * 119.99933 * 2 1 3 36 36 H 0.97006 * 120.00167 * 24.99600 * 7 5 3 37 37 H 1.08001 * 120.15186 * 0.02912 * 11 10 8 38 38 H 1.08004 * 119.97350 * 180.08197 * 12 11 10 39 39 H 1.07998 * 119.69254 * 179.97438 * 13 12 11 40 40 H 1.08997 * 109.41851 * 223.04888 * 16 15 14 41 41 H 1.08998 * 109.42256 * 103.22802 * 16 15 14 42 42 H 1.08999 * 109.63866 * 168.81783 * 17 16 15 43 43 H 1.09001 * 109.64061 * 289.44460 * 17 16 15 44 44 H 1.09004 * 109.33987 * 171.98742 * 19 18 17 45 45 H 1.08997 * 109.33362 * 291.48786 * 19 18 17 46 46 H 1.09005 * 111.00308 * 153.57665 * 20 5 3 47 47 H 1.08999 * 111.00254 * 277.42600 * 20 5 3 48 48 H 1.08997 * 110.36674 * 204.14882 * 21 20 5 49 49 H 1.08999 * 110.36231 * 81.82861 * 21 20 5 50 50 H 0.97000 * 120.00133 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6538 1.9720 -0.8709 5 6 3.5831 1.4535 -0.0208 6 1 3.9808 0.5175 0.3715 7 7 4.0815 1.6986 -1.3764 8 6 5.3078 1.2670 -1.7319 9 8 6.0005 0.6747 -0.9274 10 6 5.8106 1.5138 -3.1001 11 6 5.0164 2.1937 -4.0230 12 6 5.4917 2.4200 -5.2980 13 6 6.7488 1.9721 -5.6577 14 6 7.5449 1.2937 -4.7460 15 6 7.0828 1.0648 -3.4696 16 6 7.9198 0.3365 -2.4494 17 6 9.0526 -0.4149 -3.1510 18 8 9.7050 0.4872 -4.0519 19 6 8.9064 0.8216 -5.1864 20 6 3.9347 2.6393 0.9161 21 6 2.8153 2.5362 1.9818 22 7 1.6151 2.1263 1.2301 23 6 0.3192 2.3456 1.6144 24 1 -0.4756 2.2990 0.8847 25 6 0.0272 2.6280 2.9417 26 7 -1.1077 3.2165 3.2551 27 14 1.2448 2.1729 4.2833 28 1 2.2555 3.2522 4.4213 29 1 0.5232 2.0028 5.5699 30 1 1.9239 0.9018 3.9248 31 1 -0.3633 0.3867 0.9521 32 1 -0.3633 0.6313 -0.8109 33 1 -0.3633 -1.0179 -0.1412 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.5290 2.1715 -2.0183 37 1 4.0337 2.5415 -3.7408 38 1 4.8809 2.9472 -6.0159 39 1 7.1149 2.1522 -6.6577 40 1 7.2947 -0.3735 -1.9080 41 1 8.3421 1.0554 -1.7473 42 1 9.7674 -0.7743 -2.4107 43 1 8.6433 -1.2573 -3.7086 44 1 9.3972 1.6132 -5.7526 45 1 8.7956 -0.0574 -5.8214 46 1 4.9176 2.5027 1.3673 47 1 3.8800 3.5883 0.3826 48 1 2.6534 3.5038 2.4568 49 1 3.0705 1.7841 2.7284 50 1 -1.3119 3.4135 4.1827 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087653498.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:06 Heat of formation + Delta-G solvation = -25.248533 kcal Electronic energy + Delta-G solvation = -30814.991577 eV Core-core repulsion = 26807.787328 eV Total energy + Delta-G solvation = -4007.204249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.98772 -39.55291 -38.16525 -37.52326 -34.48815 -33.05181 -32.57245 -32.49749 -31.77661 -30.12438 -29.13960 -27.17979 -25.91449 -24.85027 -23.96230 -23.47339 -22.22843 -21.06280 -20.79853 -20.05112 -19.45691 -17.77833 -17.07434 -16.75135 -16.43474 -16.14908 -16.02242 -15.58510 -15.13613 -15.05922 -14.74933 -14.54535 -14.11727 -13.67047 -13.58424 -13.49070 -13.11347 -12.95573 -12.81124 -12.65381 -12.50873 -12.22065 -12.17075 -11.98757 -11.89055 -11.76203 -11.41498 -11.15863 -10.97694 -10.89230 -10.68451 -10.38158 -10.30540 -10.20686 -10.02616 -9.88086 -9.48212 -9.29507 -9.20791 -8.96694 -8.81173 -8.64244 -7.08791 -5.96507 -3.28347 0.56995 0.98071 2.71272 3.12163 3.33932 3.48149 3.49110 3.52925 3.59709 4.25842 4.38431 4.44908 4.52448 4.58637 4.71481 4.88854 4.91139 4.96509 4.98696 5.09150 5.16437 5.18353 5.20132 5.27302 5.41713 5.46553 5.57820 5.61898 5.65914 5.76898 5.85127 5.89794 5.93360 5.97058 6.04261 6.06513 6.12599 6.24539 6.32009 6.38355 6.50055 6.54433 6.56703 6.59373 6.72119 6.72986 6.78454 6.98651 7.31305 7.53111 7.68087 8.20392 8.28504 8.79133 9.65224 10.12971 11.18888 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.002636 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.662363 B =10619.034197 C =11165.075044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.160 3.840 4 H 0.045 0.955 5 C 0.134 3.866 6 H 0.099 0.901 7 N -0.709 5.709 8 C 0.557 3.443 9 O -0.534 6.534 10 C -0.133 4.133 11 C -0.081 4.081 12 C -0.130 4.130 13 C -0.087 4.087 14 C -0.135 4.135 15 C -0.011 4.011 16 C -0.119 4.119 17 C 0.054 3.946 18 O -0.377 6.377 19 C 0.104 3.896 20 C -0.140 4.140 21 C 0.108 3.892 22 N -0.599 5.599 23 C -0.234 4.234 24 H 0.099 0.901 25 C 0.021 3.979 26 N -0.910 5.910 27 Si 0.883 3.117 28 H -0.286 1.286 29 H -0.304 1.304 30 H -0.274 1.274 31 H 0.095 0.905 32 H 0.042 0.958 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.399 0.601 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.054 0.946 44 H 0.105 0.895 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.030 0.970 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.060 -4.415 -19.129 26.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C 0.052 3.948 4 H 0.063 0.937 5 C 0.029 3.971 6 H 0.117 0.883 7 N -0.360 5.360 8 C 0.344 3.656 9 O -0.413 6.413 10 C -0.136 4.136 11 C -0.099 4.099 12 C -0.148 4.148 13 C -0.106 4.106 14 C -0.136 4.136 15 C -0.013 4.013 16 C -0.156 4.156 17 C -0.022 4.022 18 O -0.296 6.296 19 C 0.028 3.972 20 C -0.179 4.179 21 C -0.017 4.017 22 N -0.325 5.325 23 C -0.361 4.361 24 H 0.116 0.884 25 C -0.177 4.177 26 N -0.554 5.554 27 Si 0.713 3.287 28 H -0.213 1.213 29 H -0.232 1.232 30 H -0.200 1.200 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.234 0.766 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.134 0.866 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.072 0.928 44 H 0.123 0.877 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.047 0.953 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.503 -4.685 -18.337 25.778 hybrid contribution -0.136 0.011 0.470 0.490 sum 17.366 -4.674 -17.867 25.350 Atomic orbital electron populations 1.21970 0.95225 0.99176 1.04671 1.21906 0.97394 0.97201 0.99956 1.21152 0.89608 0.92429 0.91596 0.93724 1.22154 0.94862 0.99360 0.80705 0.88299 1.45967 1.16899 1.58364 1.14761 1.18204 0.81548 0.78854 0.86945 1.90712 1.56405 1.41538 1.52618 1.19904 0.95588 1.03605 0.94477 1.21352 0.99138 0.96131 0.93314 1.21028 0.96222 1.01122 0.96419 1.21166 0.94049 0.96279 0.99070 1.20234 0.97940 1.01329 0.94074 1.19576 0.92741 0.95086 0.93852 1.21459 0.96498 1.01083 0.96543 1.22828 0.95419 0.91444 0.92534 1.88067 1.41033 1.65743 1.34728 1.21387 0.87504 1.00007 0.88347 1.23132 0.98895 0.98155 0.97731 1.22007 0.86662 0.98969 0.94046 1.44777 1.01825 1.64542 1.21402 1.18628 0.81773 1.42267 0.93403 0.88372 1.24994 0.96079 0.99762 0.96906 1.69800 1.24589 1.42634 1.18359 0.87014 0.80448 0.79323 0.81876 1.21304 1.23209 1.20023 0.88658 0.93916 0.95053 0.93863 0.92529 0.76570 0.85249 0.85120 0.85443 0.86636 0.89089 0.88123 0.92765 0.87748 0.91724 0.91243 0.90970 0.91916 0.95266 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.73 37.16 0.32 -2.53 16 2 C -0.12 -2.22 5.50 -26.73 -0.15 -2.37 16 3 C 0.16 2.92 3.03 -66.96 -0.20 2.72 16 4 H 0.05 0.80 7.72 -51.93 -0.40 0.40 16 5 C 0.13 2.19 2.84 -66.09 -0.19 2.00 16 6 H 0.10 1.74 7.25 -51.93 -0.38 1.36 16 7 N -0.71 -9.51 5.13 -52.97 -0.27 -9.78 16 8 C 0.56 7.80 7.73 -12.33 -0.10 7.70 16 9 O -0.53 -8.79 12.82 5.32 0.07 -8.72 16 10 C -0.13 -1.57 5.88 -104.90 -0.62 -2.19 16 11 C -0.08 -0.76 9.54 -39.24 -0.37 -1.14 16 12 C -0.13 -1.03 10.03 -39.70 -0.40 -1.43 16 13 C -0.09 -0.68 9.66 -39.40 -0.38 -1.06 16 14 C -0.14 -1.29 5.80 -104.65 -0.61 -1.90 16 15 C -0.01 -0.13 5.81 -104.21 -0.61 -0.74 16 16 C -0.12 -1.37 4.54 -27.88 -0.13 -1.50 16 17 C 0.05 0.51 6.85 37.14 0.25 0.76 16 18 O -0.38 -3.92 10.80 -35.23 -0.38 -4.30 16 19 C 0.10 0.84 6.66 36.00 0.24 1.08 16 20 C -0.14 -2.41 6.77 -24.58 -0.17 -2.58 16 21 C 0.11 2.31 4.69 -2.53 -0.01 2.29 16 22 N -0.60 -13.53 2.94 -162.58 -0.48 -14.01 16 23 C -0.23 -6.16 7.93 -15.06 -0.12 -6.28 16 24 H 0.10 2.72 6.94 -52.49 -0.36 2.36 16 25 C 0.02 0.59 5.45 -17.43 -0.10 0.50 16 26 N -0.91 -27.23 13.97 55.49 0.78 -26.45 16 27 Si 0.88 22.25 24.25 -169.99 -4.12 18.13 16 28 H -0.29 -7.01 6.52 56.52 0.37 -6.64 16 29 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 30 H -0.27 -6.84 6.48 56.52 0.37 -6.47 16 31 H 0.09 2.12 5.42 -51.93 -0.28 1.84 16 32 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.40 4.44 6.39 -40.82 -0.26 4.18 16 37 H 0.13 0.99 6.39 -52.49 -0.34 0.66 16 38 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.12 1.48 6.01 -51.93 -0.31 1.16 16 41 H 0.09 1.15 8.09 -51.93 -0.42 0.73 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.45 8.07 -51.93 -0.42 0.03 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.06 1.42 6.58 -51.93 -0.34 1.08 16 49 H 0.03 0.66 5.43 -51.93 -0.28 0.38 16 50 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -31.66 379.44 -9.66 -41.32 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.65 Total: 4.75 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -3.32 Total: -6.65 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.03 Total: -50.24 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.31 Total: -13.02 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.12 Total: 18.13 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.66 -9.66 -41.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087653498.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.070 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds