Wall clock time and date at job start Wed Apr 1 2020 05:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47314 * 2 1 4 4 H 1.09002 * 109.87078 * 55.80843 * 3 2 1 5 5 C 1.54324 * 109.88115 * 294.79369 * 3 2 1 6 6 H 1.08995 * 110.72088 * 336.77546 * 5 3 2 7 7 N 1.46494 * 110.72106 * 99.87497 * 5 3 2 8 8 C 1.34776 * 120.00100 * 202.55944 * 7 5 3 9 9 O 1.21593 * 120.00087 * 359.71649 * 8 7 5 10 10 C 1.47539 * 120.00239 * 179.72307 * 8 7 5 11 11 C 1.39524 * 120.05351 * 359.72040 * 10 8 7 12 12 C 1.37784 * 120.18584 * 179.70240 * 11 10 8 13 13 C 1.38640 * 119.97434 * 0.71266 * 12 11 10 14 14 C 1.37662 * 120.32116 * 359.71282 * 13 12 11 15 15 C 1.38877 * 120.87056 * 359.72035 * 14 13 12 16 16 O 1.35855 * 111.30533 * 180.94407 * 15 14 13 17 17 C 1.43773 * 109.27700 * 340.96960 * 16 15 14 18 18 H 1.08994 * 110.75350 * 269.41925 * 17 16 15 19 19 C 1.53004 * 110.91136 * 146.13055 * 17 16 15 20 20 C 1.51667 * 132.13611 * 179.53369 * 14 13 12 21 21 C 1.55157 * 103.09907 * 218.32232 * 5 3 2 22 22 C 1.55118 * 101.48700 * 35.28494 * 21 5 3 23 23 N 1.47020 * 110.01180 * 176.90593 * 3 2 1 24 24 C 1.36935 * 125.65040 * 298.47020 * 23 3 2 25 25 H 1.08007 * 119.99706 * 345.37234 * 24 23 3 26 26 C 1.38804 * 120.00332 * 165.37577 * 24 23 3 27 27 N 1.31618 * 120.00159 * 0.02562 * 26 24 23 28 28 Si 1.86805 * 120.00210 * 179.97438 * 26 24 23 29 29 H 1.48495 * 109.46835 * 359.97438 * 28 26 24 30 30 H 1.48490 * 109.47154 * 120.00003 * 28 26 24 31 31 H 1.48501 * 109.46765 * 240.00164 * 28 26 24 32 32 H 1.09003 * 109.46494 * 305.57198 * 1 2 3 33 33 H 1.08996 * 109.47214 * 65.56790 * 1 2 3 34 34 H 1.09005 * 109.47008 * 185.57525 * 1 2 3 35 35 H 1.09008 * 109.46639 * 240.00220 * 2 1 3 36 36 H 1.08994 * 109.47114 * 120.00470 * 2 1 3 37 37 H 0.96999 * 120.00356 * 22.27394 * 7 5 3 38 38 H 1.07998 * 119.90707 * 359.97438 * 11 10 8 39 39 H 1.08006 * 120.01151 * 180.42120 * 12 11 10 40 40 H 1.08006 * 119.84264 * 179.68980 * 13 12 11 41 41 H 1.08995 * 109.47180 * 306.56456 * 19 17 16 42 42 H 1.09001 * 109.46947 * 66.56287 * 19 17 16 43 43 H 1.09003 * 109.46734 * 186.56426 * 19 17 16 44 44 H 1.09000 * 110.94699 * 313.68705 * 20 14 13 45 45 H 1.09005 * 110.94720 * 77.34184 * 20 14 13 46 46 H 1.09000 * 111.00278 * 153.48615 * 21 5 3 47 47 H 1.08998 * 111.00671 * 277.33626 * 21 5 3 48 48 H 1.09000 * 110.42011 * 204.29188 * 22 21 5 49 49 H 1.08997 * 110.20814 * 82.03898 * 22 21 5 50 50 H 0.96996 * 120.00239 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6205 1.9838 0.8479 5 6 1.6413 2.1401 -1.3175 6 1 1.4660 1.4067 -2.1045 7 7 0.4572 2.9801 -1.1214 8 6 -0.3191 3.3068 -2.1736 9 8 -0.0338 2.9086 -3.2865 10 6 -1.5150 4.1478 -1.9751 11 6 -1.8466 4.6006 -0.6978 12 6 -2.9594 5.3912 -0.5103 13 6 -3.7611 5.7263 -1.5906 14 6 -3.4480 5.2777 -2.8539 15 6 -2.3258 4.4893 -3.0724 16 8 -2.1916 4.1752 -4.3873 17 6 -3.4517 4.3674 -5.0522 18 1 -4.0411 3.4508 -5.0352 19 6 -3.2429 4.8487 -6.4895 20 6 -4.1246 5.4678 -4.1979 21 6 2.8835 3.0103 -1.6446 22 6 4.0370 2.1042 -1.1400 23 7 3.5083 1.4569 0.0746 24 6 4.2603 0.9521 1.1016 25 1 3.7935 0.7123 2.0455 26 6 5.6225 0.7485 0.9295 27 7 6.1916 1.0412 -0.2206 28 14 6.6485 0.0605 2.3308 29 1 5.7778 -0.1819 3.5090 30 1 7.2737 -1.2174 1.9054 31 1 7.7096 1.0346 2.6920 32 1 -0.3632 0.5979 0.8359 33 1 -0.3633 0.4250 -0.9356 34 1 -0.3633 -1.0229 0.0998 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 0.2295 3.2978 -0.2336 38 1 -1.2269 4.3344 0.1457 39 1 -3.2097 5.7458 0.4787 40 1 -4.6357 6.3419 -1.4404 41 1 -2.6046 5.7322 -6.4877 42 1 -2.7684 4.0589 -7.0718 43 1 -4.2071 5.0979 -6.9328 44 1 -5.1987 5.2990 -4.1208 45 1 -3.9160 6.4582 -4.6026 46 1 2.9639 3.1890 -2.7169 47 1 2.8577 3.9508 -1.0943 48 1 4.9143 2.7043 -0.8988 49 1 4.2839 1.3550 -1.8922 50 1 7.1435 0.8986 -0.3410 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087661992.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:42 Heat of formation + Delta-G solvation = -19.536530 kcal Electronic energy + Delta-G solvation = -30693.900106 eV Core-core repulsion = 26686.943548 eV Total energy + Delta-G solvation = -4006.956558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.49566 -39.57837 -37.86854 -37.24818 -33.97625 -33.41184 -32.73281 -31.86026 -31.22249 -30.45944 -28.85333 -26.91574 -26.52952 -24.65780 -23.50279 -22.30359 -22.06530 -21.86541 -20.44976 -20.04959 -19.48950 -17.80184 -17.29205 -16.95258 -16.70413 -15.95918 -15.51518 -15.17460 -14.73537 -14.71413 -14.14686 -13.93103 -13.86916 -13.70854 -13.55113 -13.48460 -13.17400 -12.99018 -12.67109 -12.62116 -12.37061 -12.05682 -11.92437 -11.90160 -11.73055 -11.60485 -11.31269 -11.10013 -11.01675 -10.87575 -10.81783 -10.56122 -10.40123 -10.21105 -10.02965 -9.71396 -9.63051 -9.51351 -9.18023 -8.60407 -8.51898 -8.34067 -6.78080 -5.73267 -3.09653 0.68958 1.07235 2.87770 3.00422 3.37103 3.40753 3.46107 3.47915 3.73402 4.05563 4.17031 4.47938 4.51279 4.62429 4.75475 4.83473 4.87689 5.00149 5.12120 5.18287 5.27941 5.33825 5.39248 5.45786 5.49552 5.57595 5.58306 5.70181 5.77235 5.79749 5.85291 5.91081 5.93123 6.03482 6.10784 6.12440 6.27757 6.33345 6.37473 6.45786 6.51362 6.63311 6.74626 6.79697 6.95773 6.99269 7.20325 7.54755 7.64507 7.80921 7.82862 8.28656 8.52502 9.20209 9.81250 10.49595 11.38687 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.002502 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.074384 B =11186.827036 C =11649.820140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.161 3.839 4 H 0.034 0.966 5 C 0.140 3.860 6 H 0.093 0.907 7 N -0.711 5.711 8 C 0.555 3.445 9 O -0.526 6.526 10 C -0.153 4.153 11 C -0.052 4.052 12 C -0.158 4.158 13 C -0.048 4.048 14 C -0.191 4.191 15 C 0.170 3.830 16 O -0.272 6.272 17 C 0.070 3.930 18 H 0.088 0.912 19 C -0.149 4.149 20 C -0.104 4.104 21 C -0.157 4.157 22 C 0.175 3.825 23 N -0.594 5.594 24 C -0.226 4.226 25 H 0.075 0.925 26 C -0.004 4.004 27 N -0.916 5.916 28 Si 0.909 3.091 29 H -0.279 1.279 30 H -0.290 1.290 31 H -0.291 1.291 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.394 0.606 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.074 0.926 49 H 0.027 0.973 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.922 10.368 -5.229 26.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.035 3.965 6 H 0.111 0.889 7 N -0.363 5.363 8 C 0.341 3.659 9 O -0.403 6.403 10 C -0.157 4.157 11 C -0.071 4.071 12 C -0.176 4.176 13 C -0.066 4.066 14 C -0.192 4.192 15 C 0.122 3.878 16 O -0.184 6.184 17 C 0.014 3.986 18 H 0.106 0.894 19 C -0.206 4.206 20 C -0.141 4.141 21 C -0.196 4.196 22 C 0.049 3.951 23 N -0.318 5.318 24 C -0.355 4.355 25 H 0.093 0.907 26 C -0.201 4.201 27 N -0.562 5.562 28 Si 0.740 3.260 29 H -0.205 1.205 30 H -0.217 1.217 31 H -0.218 1.218 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.230 0.770 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.045 0.955 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.253 9.930 -6.148 26.021 hybrid contribution 0.343 -0.213 1.209 1.274 sum -22.910 9.717 -4.939 25.371 Atomic orbital electron populations 1.21772 0.97267 1.00452 1.00954 1.22009 0.93560 0.99169 1.02381 1.21068 0.87077 0.93336 0.93197 0.94836 1.22092 0.83301 0.92385 0.98673 0.88908 1.45976 1.27479 1.52778 1.10026 1.17997 0.82480 0.80436 0.84958 1.90821 1.72099 1.53832 1.23575 1.19381 0.99047 1.05729 0.91497 1.21135 0.96307 0.94752 0.94902 1.20951 0.96045 1.01416 0.99157 1.20447 0.98688 0.97068 0.90440 1.20800 0.99267 1.03237 0.95865 1.19446 0.92879 0.91004 0.84444 1.87052 1.32276 1.82795 1.16252 1.23483 0.83294 0.98073 0.93798 0.89424 1.21867 1.02916 1.02651 0.93157 1.21884 1.00820 1.00323 0.91073 1.23458 0.96766 0.99008 1.00399 1.21462 0.93064 0.92907 0.87619 1.44449 0.98390 1.68255 1.20741 1.18979 0.89858 1.35786 0.90863 0.90671 1.24914 0.97243 1.00990 0.96962 1.69942 1.10508 1.52869 1.22897 0.86087 0.80264 0.78485 0.81175 1.20462 1.21714 1.21781 0.93486 0.93284 0.93716 0.92364 0.91735 0.77047 0.84631 0.84823 0.85475 0.91321 0.91008 0.90340 0.89001 0.88957 0.91852 0.92093 0.90820 0.95455 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.57 37.16 0.36 -1.89 16 2 C -0.13 -2.49 5.42 -26.73 -0.14 -2.64 16 3 C 0.16 3.25 2.93 -66.96 -0.20 3.05 16 4 H 0.03 0.66 7.70 -51.93 -0.40 0.26 16 5 C 0.14 2.63 1.96 -66.10 -0.13 2.50 16 6 H 0.09 1.91 7.27 -51.93 -0.38 1.54 16 7 N -0.71 -11.09 4.86 -53.07 -0.26 -11.34 16 8 C 0.55 9.34 7.76 -12.47 -0.10 9.24 16 9 O -0.53 -10.94 15.55 -10.30 -0.16 -11.10 16 10 C -0.15 -2.11 5.89 -104.72 -0.62 -2.73 16 11 C -0.05 -0.54 9.51 -39.27 -0.37 -0.92 16 12 C -0.16 -1.33 10.05 -39.60 -0.40 -1.73 16 13 C -0.05 -0.40 10.02 -39.64 -0.40 -0.80 16 14 C -0.19 -1.95 6.27 -104.12 -0.65 -2.60 16 15 C 0.17 2.33 6.73 -38.44 -0.26 2.07 16 16 O -0.27 -3.94 9.84 -34.87 -0.34 -4.28 16 17 C 0.07 0.65 4.25 -25.83 -0.11 0.54 16 18 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 19 C -0.15 -1.07 9.59 37.16 0.36 -0.72 16 20 C -0.10 -0.79 6.65 -26.51 -0.18 -0.96 16 21 C -0.16 -3.19 6.79 -24.47 -0.17 -3.36 16 22 C 0.17 4.30 5.41 -2.41 -0.01 4.29 16 23 N -0.59 -14.80 3.13 -162.44 -0.51 -15.31 16 24 C -0.23 -6.15 9.75 -15.06 -0.15 -6.30 16 25 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 26 C 0.00 -0.11 5.47 -17.43 -0.10 -0.21 16 27 N -0.92 -26.77 10.57 55.49 0.59 -26.19 16 28 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 31 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.77 7.40 -51.93 -0.38 0.38 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 1.19 8.07 -51.92 -0.42 0.77 16 36 H 0.06 1.30 7.91 -51.93 -0.41 0.89 16 37 H 0.39 5.07 6.35 -40.82 -0.26 4.82 16 38 H 0.14 1.13 6.37 -52.49 -0.33 0.80 16 39 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.61 7.93 -51.93 -0.41 0.19 16 46 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.07 2.00 6.93 -51.93 -0.36 1.64 16 49 H 0.03 0.73 8.06 -51.93 -0.42 0.32 16 50 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -33.77 398.38 -10.93 -44.70 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.97 Total: 3.79 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -3.26 Total: -3.15 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.18 Total: -52.84 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.50 Total: -15.39 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.77 -10.93 -44.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087661992.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.164 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds