Wall clock time and date at job start Wed Apr 1 2020 05:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46619 * 2 1 4 4 H 1.08994 * 109.99831 * 56.20324 * 3 2 1 5 5 C 1.54328 * 109.88274 * 295.09997 * 3 2 1 6 6 H 1.09002 * 110.87089 * 336.83155 * 5 3 2 7 7 N 1.46502 * 110.71322 * 100.02787 * 5 3 2 8 8 C 1.34775 * 119.99745 * 199.97308 * 7 5 3 9 9 O 1.21588 * 120.00229 * 0.02562 * 8 7 5 10 10 C 1.47536 * 120.00132 * 180.02562 * 8 7 5 11 11 C 1.39525 * 120.05436 * 359.72903 * 10 8 7 12 12 C 1.37786 * 120.18868 * 179.73361 * 11 10 8 13 13 C 1.38645 * 119.97162 * 0.73888 * 12 11 10 14 14 C 1.37658 * 120.31830 * 359.70529 * 13 12 11 15 15 C 1.38880 * 120.87509 * 359.64338 * 14 13 12 16 16 O 1.35856 * 111.29339 * 181.02637 * 15 14 13 17 17 C 1.43778 * 109.24040 * 340.65454 * 16 15 14 18 18 H 1.09004 * 110.91028 * 146.27443 * 17 16 15 19 19 C 1.52997 * 110.75962 * 269.56681 * 17 16 15 20 20 C 1.51675 * 132.12811 * 179.11883 * 14 13 12 21 21 C 1.55152 * 102.94190 * 218.39313 * 5 3 2 22 22 C 1.54907 * 101.58388 * 35.50479 * 21 5 3 23 23 N 1.47023 * 109.87967 * 177.29718 * 3 2 1 24 24 C 1.36937 * 125.64735 * 298.32377 * 23 3 2 25 25 H 1.07999 * 120.00120 * 348.11032 * 24 23 3 26 26 C 1.38815 * 119.99947 * 168.11902 * 24 23 3 27 27 N 1.31615 * 120.00190 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 119.99773 * 179.97438 * 26 24 23 29 29 H 1.48496 * 109.47474 * 59.99660 * 28 26 24 30 30 H 1.48499 * 109.46944 * 179.97438 * 28 26 24 31 31 H 1.48500 * 109.47281 * 299.99440 * 28 26 24 32 32 H 1.09006 * 109.46576 * 185.49486 * 1 2 3 33 33 H 1.08996 * 109.47323 * 305.49188 * 1 2 3 34 34 H 1.09000 * 109.47129 * 65.49812 * 1 2 3 35 35 H 1.08998 * 109.47240 * 239.99860 * 2 1 3 36 36 H 1.08998 * 109.47018 * 119.99518 * 2 1 3 37 37 H 0.96993 * 120.00326 * 19.98478 * 7 5 3 38 38 H 1.08007 * 119.90757 * 0.02562 * 11 10 8 39 39 H 1.08004 * 120.01442 * 180.46336 * 12 11 10 40 40 H 1.07997 * 119.83984 * 179.71951 * 13 12 11 41 41 H 1.08998 * 109.46970 * 173.34156 * 19 17 16 42 42 H 1.09001 * 109.46622 * 293.34070 * 19 17 16 43 43 H 1.08999 * 109.46982 * 53.33548 * 19 17 16 44 44 H 1.09002 * 110.94598 * 313.75988 * 20 14 13 45 45 H 1.09001 * 110.94488 * 77.44646 * 20 14 13 46 46 H 1.09000 * 111.00348 * 153.58028 * 21 5 3 47 47 H 1.09004 * 111.00487 * 277.39013 * 21 5 3 48 48 H 1.08998 * 110.37018 * 81.82693 * 22 21 5 49 49 H 1.09000 * 110.36833 * 204.15127 * 22 21 5 50 50 H 0.96994 * 119.99930 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6270 1.9839 0.8511 5 6 1.6344 2.1426 -1.3142 6 1 1.4537 1.4126 -2.1033 7 7 0.4533 2.9849 -1.1096 8 6 -0.2994 3.3576 -2.1636 9 8 0.0015 2.9943 -3.2843 10 6 -1.4884 4.2063 -1.9577 11 6 -1.8380 4.6192 -0.6716 12 6 -2.9448 5.4164 -0.4767 13 6 -3.7231 5.7976 -1.5590 14 6 -3.3925 5.3884 -2.8311 15 6 -2.2747 4.5957 -3.0568 16 8 -2.1199 4.3263 -4.3794 17 6 -3.3681 4.5487 -5.0575 18 1 -3.2008 4.9235 -6.0673 19 6 -4.2041 3.2678 -5.0884 20 6 -4.0473 5.6255 -4.1785 21 6 2.8775 3.0106 -1.6435 22 6 4.0310 2.1010 -1.1519 23 7 3.5087 1.4537 0.0652 24 6 4.2660 0.9472 1.0875 25 1 3.7973 0.6673 2.0194 26 6 5.6362 0.7938 0.9262 27 7 6.2074 1.1347 -0.2095 28 14 6.6693 0.1036 2.3211 29 1 6.1931 -1.2611 2.6615 30 1 8.0917 0.0402 1.8990 31 1 6.5445 0.9827 3.5114 32 1 -0.3633 -1.0230 0.0984 33 1 -0.3634 0.5966 0.8367 34 1 -0.3633 0.4262 -0.9351 35 1 1.8934 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 0.2132 3.2746 -0.2156 38 1 -1.2366 4.3170 0.1731 39 1 -3.2085 5.7406 0.5192 40 1 -4.5927 6.4188 -1.4032 41 1 -5.1896 3.4870 -5.4994 42 1 -3.7074 2.5247 -5.7123 43 1 -4.3109 2.8791 -4.0757 44 1 -5.1234 5.4613 -4.1231 45 1 -3.8261 6.6267 -4.5484 46 1 2.9536 3.1933 -2.7154 47 1 2.8563 3.9493 -1.0899 48 1 4.2716 1.3521 -1.9065 49 1 4.9112 2.6990 -0.9156 50 1 7.1647 1.0271 -0.3223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087661993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:55 Heat of formation + Delta-G solvation = -18.338006 kcal Electronic energy + Delta-G solvation = -30827.187740 eV Core-core repulsion = 26820.283154 eV Total energy + Delta-G solvation = -4006.904586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -41.55837 -39.58676 -37.87097 -37.24529 -33.97472 -33.37652 -32.73000 -31.80146 -31.02481 -30.45691 -28.85805 -27.10957 -26.52551 -24.67765 -23.60492 -22.34138 -22.10235 -21.75792 -20.46841 -20.02790 -19.50302 -17.54971 -17.21326 -16.80053 -16.64314 -16.17963 -15.64608 -15.22200 -14.74772 -14.55140 -14.23135 -14.00037 -13.94283 -13.74606 -13.67944 -13.47288 -13.02759 -12.85912 -12.65789 -12.57468 -12.37731 -12.05589 -11.93802 -11.90381 -11.67230 -11.59068 -11.28985 -11.12323 -11.08697 -10.85723 -10.80925 -10.55856 -10.39385 -10.21596 -10.08063 -9.71074 -9.60644 -9.50293 -9.17127 -8.60484 -8.51770 -8.34097 -6.79967 -5.71124 -3.07731 0.69405 1.07522 2.88478 3.05000 3.37624 3.41624 3.45988 3.46930 3.74287 4.05435 4.20367 4.49383 4.54194 4.55086 4.75805 4.84372 4.87370 5.00780 5.12595 5.21504 5.29374 5.35763 5.39374 5.44937 5.48623 5.57241 5.59045 5.69495 5.78775 5.82027 5.85262 5.90703 5.93684 6.04257 6.10179 6.12810 6.27877 6.33292 6.37743 6.45484 6.50855 6.63543 6.75580 6.79235 6.95719 6.98333 7.20092 7.57180 7.62992 7.81716 7.83579 8.29780 8.52877 9.21020 9.82122 10.49507 11.39712 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.002518 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.111687 B =11119.269353 C =11350.120140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.035 0.965 5 C 0.140 3.860 6 H 0.092 0.908 7 N -0.712 5.712 8 C 0.555 3.445 9 O -0.526 6.526 10 C -0.153 4.153 11 C -0.053 4.053 12 C -0.157 4.157 13 C -0.049 4.049 14 C -0.188 4.188 15 C 0.170 3.830 16 O -0.270 6.270 17 C 0.069 3.931 18 H 0.118 0.882 19 C -0.170 4.170 20 C -0.104 4.104 21 C -0.156 4.156 22 C 0.172 3.828 23 N -0.594 5.594 24 C -0.227 4.227 25 H 0.075 0.925 26 C -0.005 4.005 27 N -0.918 5.918 28 Si 0.911 3.089 29 H -0.285 1.285 30 H -0.290 1.290 31 H -0.285 1.285 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.394 0.606 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.025 0.975 49 H 0.079 0.921 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.185 9.737 -4.724 26.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.054 3.946 4 H 0.052 0.948 5 C 0.036 3.964 6 H 0.110 0.890 7 N -0.363 5.363 8 C 0.341 3.659 9 O -0.403 6.403 10 C -0.157 4.157 11 C -0.072 4.072 12 C -0.175 4.175 13 C -0.067 4.067 14 C -0.189 4.189 15 C 0.122 3.878 16 O -0.182 6.182 17 C 0.013 3.987 18 H 0.135 0.865 19 C -0.228 4.228 20 C -0.141 4.141 21 C -0.196 4.196 22 C 0.047 3.953 23 N -0.319 5.319 24 C -0.355 4.355 25 H 0.093 0.907 26 C -0.202 4.202 27 N -0.564 5.564 28 Si 0.741 3.259 29 H -0.211 1.211 30 H -0.216 1.216 31 H -0.212 1.212 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.229 0.771 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.043 0.957 49 H 0.097 0.903 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -23.490 9.326 -5.648 25.897 hybrid contribution 0.319 -0.205 1.194 1.253 sum -23.171 9.121 -4.454 25.296 Atomic orbital electron populations 1.21773 0.97259 1.00464 1.00968 1.22017 0.93579 0.99176 1.02378 1.21054 0.87027 0.93312 0.93241 0.94797 1.22088 0.83410 0.92320 0.98582 0.89015 1.45981 1.28311 1.52646 1.09353 1.17995 0.82470 0.80364 0.85053 1.90820 1.71114 1.55255 1.23095 1.19390 0.99420 1.05457 0.91392 1.21136 0.96170 0.95007 0.94870 1.20951 0.96278 1.01210 0.99106 1.20442 0.98681 0.97207 0.90390 1.20784 0.99322 1.03095 0.95723 1.19457 0.92818 0.91031 0.84514 1.87094 1.32251 1.83541 1.15276 1.23525 0.82661 0.95168 0.97307 0.86470 1.22240 0.99713 0.97380 1.03430 1.21880 1.01073 1.00144 0.91033 1.23426 0.96703 0.99029 1.00432 1.21490 0.93391 0.92960 0.87426 1.44452 0.98321 1.68374 1.20740 1.18907 0.89118 1.35595 0.91892 0.90707 1.24868 0.96996 1.01181 0.97115 1.69915 1.10133 1.52617 1.23768 0.86224 0.79462 0.79002 0.81196 1.21144 1.21625 1.21173 0.93711 0.93476 0.93261 0.92340 0.91762 0.77061 0.84664 0.84847 0.85501 0.90734 0.91023 0.91884 0.88890 0.89013 0.91868 0.92093 0.95686 0.90251 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.57 37.16 0.36 -1.87 16 2 C -0.13 -2.48 5.41 -26.73 -0.14 -2.63 16 3 C 0.16 3.26 2.94 -66.95 -0.20 3.06 16 4 H 0.03 0.66 7.69 -51.93 -0.40 0.26 16 5 C 0.14 2.64 1.92 -66.09 -0.13 2.51 16 6 H 0.09 1.88 7.34 -51.93 -0.38 1.50 16 7 N -0.71 -11.09 4.88 -53.07 -0.26 -11.35 16 8 C 0.55 9.32 7.76 -12.47 -0.10 9.22 16 9 O -0.53 -10.90 15.59 -10.28 -0.16 -11.06 16 10 C -0.15 -2.11 5.89 -104.72 -0.62 -2.72 16 11 C -0.05 -0.55 9.51 -39.27 -0.37 -0.92 16 12 C -0.16 -1.32 10.05 -39.60 -0.40 -1.72 16 13 C -0.05 -0.41 10.02 -39.64 -0.40 -0.80 16 14 C -0.19 -1.90 6.26 -104.12 -0.65 -2.55 16 15 C 0.17 2.29 6.59 -38.44 -0.25 2.04 16 16 O -0.27 -3.86 9.85 -34.85 -0.34 -4.21 16 17 C 0.07 0.63 4.32 -25.83 -0.11 0.52 16 18 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.17 -1.36 9.51 37.16 0.35 -1.01 16 20 C -0.10 -0.77 6.65 -26.50 -0.18 -0.95 16 21 C -0.16 -3.20 6.77 -24.59 -0.17 -3.37 16 22 C 0.17 4.26 5.46 -2.53 -0.01 4.24 16 23 N -0.59 -14.83 3.13 -162.57 -0.51 -15.34 16 24 C -0.23 -6.17 9.77 -15.06 -0.15 -6.31 16 25 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 26 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16 27 N -0.92 -26.83 10.47 55.49 0.58 -26.25 16 28 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 29 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 30 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 31 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.76 7.38 -51.93 -0.38 0.38 16 35 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 36 H 0.06 1.28 7.91 -51.93 -0.41 0.87 16 37 H 0.39 5.08 6.32 -40.82 -0.26 4.82 16 38 H 0.14 1.13 6.38 -52.48 -0.33 0.80 16 39 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.58 8.07 -51.93 -0.42 0.17 16 44 H 0.09 0.49 7.92 -51.93 -0.41 0.07 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 47 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.03 0.67 8.11 -51.93 -0.42 0.25 16 49 H 0.08 2.17 6.73 -51.93 -0.35 1.82 16 50 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -33.70 397.98 -10.93 -44.64 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.96 Total: 4.16 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.26 Total: -3.49 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.19 Total: -52.94 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.50 Total: -15.27 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.70 -10.93 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087661993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.298 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds