Wall clock time and date at job start Wed Apr 1 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46619 * 2 1 4 4 H 1.08994 * 109.99831 * 56.20324 * 3 2 1 5 5 C 1.54328 * 109.88274 * 295.09997 * 3 2 1 6 6 H 1.09002 * 110.87089 * 336.83155 * 5 3 2 7 7 N 1.46502 * 110.71322 * 100.02787 * 5 3 2 8 8 C 1.34775 * 119.99745 * 199.97308 * 7 5 3 9 9 O 1.21588 * 120.00229 * 0.02562 * 8 7 5 10 10 C 1.47536 * 120.00132 * 180.02562 * 8 7 5 11 11 C 1.39525 * 120.05436 * 359.72903 * 10 8 7 12 12 C 1.37786 * 120.18868 * 179.73361 * 11 10 8 13 13 C 1.38645 * 119.97162 * 0.73888 * 12 11 10 14 14 C 1.37658 * 120.31830 * 359.70529 * 13 12 11 15 15 C 1.38880 * 120.87509 * 359.64338 * 14 13 12 16 16 O 1.35856 * 111.29339 * 181.02637 * 15 14 13 17 17 C 1.43778 * 109.24040 * 340.65454 * 16 15 14 18 18 H 1.09004 * 110.91028 * 146.27443 * 17 16 15 19 19 C 1.52997 * 110.75962 * 269.56681 * 17 16 15 20 20 C 1.51675 * 132.12811 * 179.11883 * 14 13 12 21 21 C 1.55152 * 102.94190 * 218.39313 * 5 3 2 22 22 C 1.54907 * 101.58388 * 35.50479 * 21 5 3 23 23 N 1.47023 * 109.87967 * 177.29718 * 3 2 1 24 24 C 1.36937 * 125.64735 * 298.32377 * 23 3 2 25 25 H 1.07999 * 120.00120 * 348.11032 * 24 23 3 26 26 C 1.38815 * 119.99947 * 168.11902 * 24 23 3 27 27 N 1.31615 * 120.00190 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 119.99773 * 179.97438 * 26 24 23 29 29 H 1.48496 * 109.47474 * 59.99660 * 28 26 24 30 30 H 1.48499 * 109.46944 * 179.97438 * 28 26 24 31 31 H 1.48500 * 109.47281 * 299.99440 * 28 26 24 32 32 H 1.09006 * 109.46576 * 185.49486 * 1 2 3 33 33 H 1.08996 * 109.47323 * 305.49188 * 1 2 3 34 34 H 1.09000 * 109.47129 * 65.49812 * 1 2 3 35 35 H 1.08998 * 109.47240 * 239.99860 * 2 1 3 36 36 H 1.08998 * 109.47018 * 119.99518 * 2 1 3 37 37 H 0.96993 * 120.00326 * 19.98478 * 7 5 3 38 38 H 1.08007 * 119.90757 * 0.02562 * 11 10 8 39 39 H 1.08004 * 120.01442 * 180.46336 * 12 11 10 40 40 H 1.07997 * 119.83984 * 179.71951 * 13 12 11 41 41 H 1.08998 * 109.46970 * 173.34156 * 19 17 16 42 42 H 1.09001 * 109.46622 * 293.34070 * 19 17 16 43 43 H 1.08999 * 109.46982 * 53.33548 * 19 17 16 44 44 H 1.09002 * 110.94598 * 313.75988 * 20 14 13 45 45 H 1.09001 * 110.94488 * 77.44646 * 20 14 13 46 46 H 1.09000 * 111.00348 * 153.58028 * 21 5 3 47 47 H 1.09004 * 111.00487 * 277.39013 * 21 5 3 48 48 H 1.08998 * 110.37018 * 81.82693 * 22 21 5 49 49 H 1.09000 * 110.36833 * 204.15127 * 22 21 5 50 50 H 0.96994 * 119.99930 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6270 1.9839 0.8511 5 6 1.6344 2.1426 -1.3142 6 1 1.4537 1.4126 -2.1033 7 7 0.4533 2.9849 -1.1096 8 6 -0.2994 3.3576 -2.1636 9 8 0.0015 2.9943 -3.2843 10 6 -1.4884 4.2063 -1.9577 11 6 -1.8380 4.6192 -0.6716 12 6 -2.9448 5.4164 -0.4767 13 6 -3.7231 5.7976 -1.5590 14 6 -3.3925 5.3884 -2.8311 15 6 -2.2747 4.5957 -3.0568 16 8 -2.1199 4.3263 -4.3794 17 6 -3.3681 4.5487 -5.0575 18 1 -3.2008 4.9235 -6.0673 19 6 -4.2041 3.2678 -5.0884 20 6 -4.0473 5.6255 -4.1785 21 6 2.8775 3.0106 -1.6435 22 6 4.0310 2.1010 -1.1519 23 7 3.5087 1.4537 0.0652 24 6 4.2660 0.9472 1.0875 25 1 3.7973 0.6673 2.0194 26 6 5.6362 0.7938 0.9262 27 7 6.2074 1.1347 -0.2095 28 14 6.6693 0.1036 2.3211 29 1 6.1931 -1.2611 2.6615 30 1 8.0917 0.0402 1.8990 31 1 6.5445 0.9827 3.5114 32 1 -0.3633 -1.0230 0.0984 33 1 -0.3634 0.5966 0.8367 34 1 -0.3633 0.4262 -0.9351 35 1 1.8934 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 0.2132 3.2746 -0.2156 38 1 -1.2366 4.3170 0.1731 39 1 -3.2085 5.7406 0.5192 40 1 -4.5927 6.4188 -1.4032 41 1 -5.1896 3.4870 -5.4994 42 1 -3.7074 2.5247 -5.7123 43 1 -4.3109 2.8791 -4.0757 44 1 -5.1234 5.4613 -4.1231 45 1 -3.8261 6.6267 -4.5484 46 1 2.9536 3.1933 -2.7154 47 1 2.8563 3.9493 -1.0899 48 1 4.2716 1.3521 -1.9065 49 1 4.9112 2.6990 -0.9156 50 1 7.1647 1.0271 -0.3223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087661993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:48 Heat of formation + Delta-G solvation = -38.309460 kcal Electronic energy + Delta-G solvation = -30828.053768 eV Core-core repulsion = 26820.283154 eV Total energy + Delta-G solvation = -4007.770613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.35821 -40.96490 -39.30652 -38.25661 -35.64493 -34.38850 -34.07505 -33.50008 -31.94087 -31.34207 -30.61540 -28.16273 -27.69692 -26.47738 -24.84794 -23.53089 -23.03539 -22.56253 -22.18003 -21.51704 -20.96216 -18.76786 -18.57192 -18.08201 -17.58870 -17.20801 -16.88552 -16.61318 -16.02147 -15.88927 -15.66251 -15.53642 -15.29890 -14.81474 -14.63933 -14.47454 -14.36819 -13.99351 -13.85534 -13.56985 -13.53355 -13.26145 -13.18471 -13.01649 -12.88811 -12.76104 -12.68739 -12.59544 -12.36953 -12.22648 -12.07699 -12.01589 -11.93873 -11.90089 -11.79371 -11.56462 -11.38217 -10.88412 -10.66976 -10.12274 -9.83059 -9.14783 -8.85812 -7.83205 -5.22043 -0.14400 0.33390 1.47530 1.50829 1.56887 1.87741 2.08929 2.30027 2.52359 2.81673 3.35169 3.42562 3.49665 3.58871 3.78528 3.81959 3.90243 3.94263 3.98950 4.16175 4.21597 4.23405 4.31647 4.34701 4.38876 4.46709 4.59522 4.62754 4.67306 4.70864 4.75295 4.83108 4.85495 4.92095 4.99324 5.03627 5.12928 5.17202 5.19222 5.20526 5.29039 5.35342 5.42516 5.44694 5.49921 5.55409 5.64819 5.70074 5.71163 6.18978 6.22971 6.57389 7.08707 7.26027 7.76647 8.43729 9.27091 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.002518 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.111687 B =11119.269353 C =11350.120140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.161 3.839 4 H 0.056 0.944 5 C 0.159 3.841 6 H 0.071 0.929 7 N -0.698 5.698 8 C 0.554 3.446 9 O -0.576 6.576 10 C -0.185 4.185 11 C -0.055 4.055 12 C -0.149 4.149 13 C -0.039 4.039 14 C -0.191 4.191 15 C 0.138 3.862 16 O -0.313 6.313 17 C 0.056 3.944 18 H 0.132 0.868 19 C -0.165 4.165 20 C -0.095 4.095 21 C -0.142 4.142 22 C 0.182 3.818 23 N -0.612 5.612 24 C -0.232 4.232 25 H 0.086 0.914 26 C -0.066 4.066 27 N -0.952 5.952 28 Si 0.978 3.022 29 H -0.278 1.278 30 H -0.299 1.299 31 H -0.274 1.274 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.033 0.967 36 H 0.054 0.946 37 H 0.411 0.589 38 H 0.153 0.847 39 H 0.169 0.831 40 H 0.165 0.835 41 H 0.106 0.894 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.121 0.879 45 H 0.105 0.895 46 H 0.059 0.941 47 H 0.072 0.928 48 H -0.010 1.010 49 H 0.048 0.952 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.134 11.418 -2.459 30.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.054 3.946 4 H 0.074 0.926 5 C 0.053 3.947 6 H 0.089 0.911 7 N -0.350 5.350 8 C 0.343 3.657 9 O -0.457 6.457 10 C -0.189 4.189 11 C -0.073 4.073 12 C -0.167 4.167 13 C -0.057 4.057 14 C -0.192 4.192 15 C 0.091 3.909 16 O -0.227 6.227 17 C 0.001 3.999 18 H 0.149 0.851 19 C -0.223 4.223 20 C -0.131 4.131 21 C -0.182 4.182 22 C 0.056 3.944 23 N -0.337 5.337 24 C -0.361 4.361 25 H 0.104 0.896 26 C -0.259 4.259 27 N -0.601 5.601 28 Si 0.806 3.194 29 H -0.204 1.204 30 H -0.225 1.225 31 H -0.199 1.199 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.249 0.751 38 H 0.170 0.830 39 H 0.187 0.813 40 H 0.183 0.817 41 H 0.125 0.875 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.140 0.860 45 H 0.123 0.877 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.008 0.992 49 H 0.066 0.934 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -27.503 11.021 -3.337 29.817 hybrid contribution 1.444 -0.681 0.458 1.661 sum -26.060 10.339 -2.879 28.183 Atomic orbital electron populations 1.21654 0.93881 1.02023 1.01617 1.21904 0.96437 0.97553 1.00657 1.21228 0.84453 0.94559 0.94327 0.92636 1.21622 0.83961 0.91797 0.97333 0.91078 1.45708 1.27017 1.51999 1.10258 1.18580 0.83043 0.79847 0.84188 1.90787 1.72578 1.57282 1.25043 1.19347 0.98997 1.07164 0.93406 1.21380 0.97148 0.95081 0.93720 1.21406 0.94883 0.99529 1.00855 1.20952 0.99238 0.96111 0.89370 1.21173 0.98216 1.02199 0.97594 1.19854 0.94327 0.92510 0.84241 1.87035 1.35154 1.84154 1.16320 1.23882 0.81569 0.96341 0.98122 0.85081 1.22225 1.01066 0.96673 1.02299 1.21932 1.02212 0.99990 0.88977 1.23234 0.95975 0.98816 1.00184 1.21160 0.93936 0.92295 0.86969 1.44684 1.00467 1.68414 1.20136 1.19315 0.89573 1.34456 0.92721 0.89635 1.25714 0.98385 1.02226 0.99529 1.70144 1.09765 1.54286 1.25867 0.85164 0.77119 0.78570 0.78545 1.20359 1.22500 1.19942 0.92105 0.91138 0.93852 0.94790 0.92767 0.75100 0.82973 0.81334 0.81749 0.87497 0.92580 0.93460 0.86043 0.87672 0.92197 0.90924 0.99171 0.93359 0.94420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.57 71.98 0.69 -3.13 16 2 C -0.13 -4.73 5.41 30.60 0.17 -4.57 16 3 C 0.16 6.47 2.94 45.34 0.13 6.60 16 4 H 0.06 2.04 7.69 -2.39 -0.02 2.02 16 5 C 0.16 6.10 1.92 46.18 0.09 6.19 16 6 H 0.07 3.07 7.34 -2.39 -0.02 3.05 16 7 N -0.70 -21.47 4.88 -440.07 -2.15 -23.62 16 8 C 0.55 19.00 7.76 86.70 0.67 19.67 16 9 O -0.58 -25.24 15.59 10.89 0.17 -25.07 16 10 C -0.19 -5.02 5.89 -19.93 -0.12 -5.13 16 11 C -0.05 -0.99 9.51 22.47 0.21 -0.77 16 12 C -0.15 -1.85 10.05 22.26 0.22 -1.62 16 13 C -0.04 -0.47 10.02 22.23 0.22 -0.25 16 14 C -0.19 -3.36 6.26 -19.54 -0.12 -3.48 16 15 C 0.14 3.69 6.59 23.01 0.15 3.84 16 16 O -0.31 -9.29 9.85 -77.05 -0.76 -10.05 16 17 C 0.06 0.97 4.32 31.18 0.13 1.11 16 18 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 19 C -0.17 -2.53 9.51 71.98 0.68 -1.85 16 20 C -0.09 -1.12 6.65 30.74 0.20 -0.92 16 21 C -0.14 -6.07 6.77 31.98 0.22 -5.85 16 22 C 0.18 9.51 5.46 86.85 0.47 9.99 16 23 N -0.61 -31.32 3.13 -668.26 -2.09 -33.41 16 24 C -0.23 -12.74 9.77 84.03 0.82 -11.92 16 25 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 26 C -0.07 -3.73 5.47 84.86 0.46 -3.27 16 27 N -0.95 -58.13 10.47 21.65 0.23 -57.90 16 28 Si 0.98 45.72 29.55 68.60 2.03 47.75 16 29 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 30 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 31 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 32 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.04 1.30 7.38 -2.39 -0.02 1.28 16 35 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 36 H 0.05 2.14 7.91 -2.39 -0.02 2.12 16 37 H 0.41 9.81 6.32 -92.71 -0.59 9.22 16 38 H 0.15 2.05 6.38 -2.91 -0.02 2.03 16 39 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 41 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.05 0.86 8.07 -2.39 -0.02 0.84 16 44 H 0.12 0.74 7.92 -2.39 -0.02 0.72 16 45 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 48 H -0.01 -0.57 8.11 -2.39 -0.02 -0.59 16 49 H 0.05 2.80 6.73 -2.39 -0.02 2.78 16 50 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -79.50 397.98 3.10 -76.40 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.36 Total: 21.28 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 5.32 Total: 4.62 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -4.01 Total: -114.93 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.59 Total: -35.11 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -79.50 3.10 -76.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087661993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.087 kcal (2) G-P(sol) polarization free energy of solvation -79.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds