Wall clock time and date at job start Wed Apr 1 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47257 * 2 1 4 4 H 1.09000 * 109.87449 * 54.19321 * 3 2 1 5 5 C 1.54421 * 110.00709 * 293.10048 * 3 2 1 6 6 H 1.09000 * 110.72938 * 336.66319 * 5 3 2 7 7 N 1.46502 * 110.76017 * 99.96922 * 5 3 2 8 8 C 1.34776 * 119.99957 * 199.94208 * 7 5 3 9 9 O 1.21277 * 120.00196 * 359.97438 * 8 7 5 10 10 C 1.50700 * 119.99935 * 179.97438 * 8 7 5 11 11 C 1.50698 * 109.47305 * 179.97438 * 10 8 7 12 12 C 1.38282 * 120.11719 * 90.00192 * 11 10 8 13 13 C 1.37939 * 120.35474 * 179.82973 * 12 11 10 14 14 C 1.39283 * 120.23949 * 0.09510 * 13 12 11 15 15 C 1.38882 * 118.87436 * 0.17780 * 14 13 12 16 16 C 1.37749 * 120.78404 * 359.34360 * 15 14 13 17 17 C 1.51642 * 107.04114 * 179.45620 * 15 14 13 18 18 C 1.54713 * 101.91671 * 344.49945 * 17 15 14 19 19 O 1.36132 * 129.88477 * 180.61306 * 14 13 12 20 20 C 1.55159 * 102.89674 * 218.31878 * 5 3 2 21 21 C 1.54910 * 101.61289 * 35.50492 * 20 5 3 22 22 N 1.47025 * 109.88075 * 175.20498 * 3 2 1 23 23 C 1.36934 * 125.65345 * 298.55202 * 22 3 2 24 24 H 1.08009 * 119.99414 * 347.90408 * 23 22 3 25 25 C 1.38808 * 120.00333 * 167.90268 * 23 22 3 26 26 N 1.31620 * 120.00133 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00099 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46855 * 59.99974 * 27 25 23 29 29 H 1.48492 * 109.47288 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.47220 * 300.00192 * 27 25 23 31 31 H 1.08997 * 109.47432 * 185.43562 * 1 2 3 32 32 H 1.09002 * 109.46794 * 305.44196 * 1 2 3 33 33 H 1.09004 * 109.46692 * 65.43319 * 1 2 3 34 34 H 1.09004 * 109.46883 * 239.99894 * 2 1 3 35 35 H 1.09004 * 109.46988 * 120.00141 * 2 1 3 36 36 H 0.96997 * 120.00150 * 19.93628 * 7 5 3 37 37 H 1.09002 * 109.47351 * 300.00183 * 10 8 7 38 38 H 1.09008 * 109.47253 * 60.00084 * 10 8 7 39 39 H 1.08001 * 119.82270 * 359.84862 * 12 11 10 40 40 H 1.07999 * 119.87796 * 180.11963 * 13 12 11 41 41 H 1.08000 * 120.00925 * 180.60331 * 16 15 14 42 42 H 1.09005 * 110.94074 * 226.34429 * 17 15 14 43 43 H 1.08998 * 110.97426 * 102.67177 * 17 15 14 44 44 H 1.08995 * 110.74814 * 266.98765 * 18 17 15 45 45 H 1.09000 * 110.74271 * 143.63219 * 18 17 15 46 46 H 1.08995 * 111.00598 * 277.40851 * 20 5 3 47 47 H 1.09002 * 111.00327 * 153.59210 * 20 5 3 48 48 H 1.08998 * 110.37141 * 81.80838 * 21 20 5 49 49 H 1.08998 * 110.36712 * 204.02577 * 21 20 5 50 50 H 0.96991 * 120.00316 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5982 1.9917 0.8313 5 6 1.6795 2.1303 -1.3347 6 1 1.5279 1.3910 -2.1211 7 7 0.4925 2.9749 -1.1795 8 6 -0.2228 3.3376 -2.2627 9 8 0.1165 2.9653 -3.3659 10 6 -1.4441 4.2058 -2.1030 11 6 -2.0567 4.4647 -3.4553 12 6 -3.0178 3.6066 -3.9574 13 6 -3.5844 3.8409 -5.1931 14 6 -3.1912 4.9439 -5.9473 15 6 -2.2210 5.7953 -5.4349 16 6 -1.6637 5.5649 -4.1964 17 6 -1.9920 6.8812 -6.4683 18 6 -2.6535 6.2698 -7.7261 19 8 -3.6213 5.3645 -7.1685 20 6 2.9337 2.9952 -1.6285 21 6 4.0696 2.0905 -1.0891 22 7 3.5057 1.4545 0.1156 23 6 4.2276 0.9568 1.1674 24 1 3.7275 0.6874 2.0861 25 6 5.6018 0.7983 1.0529 26 7 6.2111 1.1260 -0.0668 27 14 6.5865 0.1199 2.4880 28 1 6.0955 -1.2402 2.8263 29 1 8.0218 0.0485 2.1138 30 1 6.4250 1.0114 3.6646 31 1 -0.3634 -1.0230 0.0973 32 1 -0.3633 0.5959 0.8373 33 1 -0.3633 0.4273 -0.9347 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.2212 3.2729 -0.2972 37 1 -2.1693 3.6992 -1.4662 38 1 -1.1590 5.1536 -1.6463 39 1 -3.3268 2.7486 -3.3789 40 1 -4.3357 3.1668 -5.5770 41 1 -0.9171 6.2405 -3.8058 42 1 -0.9268 7.0468 -6.6298 43 1 -2.4885 7.8070 -6.1780 44 1 -1.9197 5.7300 -8.3246 45 1 -3.1438 7.0422 -8.3186 46 1 2.8939 3.9388 -1.0843 47 1 3.0470 3.1682 -2.6987 48 1 4.3359 1.3346 -1.8278 49 1 4.9419 2.6907 -0.8301 50 1 7.1713 1.0149 -0.1469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087676843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:25 Heat of formation + Delta-G solvation = -23.942978 kcal Electronic energy + Delta-G solvation = -30012.855240 eV Core-core repulsion = 26005.707604 eV Total energy + Delta-G solvation = -4007.147636 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.27474 -39.79523 -38.13126 -37.24684 -33.97252 -32.92816 -32.78091 -32.31952 -31.57327 -29.46819 -29.06893 -27.61989 -26.25554 -24.37161 -23.64655 -22.43244 -22.10196 -21.42497 -20.43224 -20.09474 -19.38871 -17.58446 -16.94535 -16.92270 -16.74906 -16.38124 -15.95719 -15.35974 -14.83097 -14.52847 -14.27381 -14.06375 -13.94050 -13.73631 -13.55408 -13.41851 -13.24990 -13.14511 -12.74081 -12.59032 -12.25584 -12.04763 -11.96285 -11.88955 -11.75423 -11.62761 -11.13361 -11.01940 -10.92424 -10.88468 -10.83726 -10.60934 -10.43727 -10.26179 -10.11075 -9.76111 -9.64649 -9.55695 -9.01456 -8.64368 -8.54879 -8.18809 -6.83462 -5.74664 -3.11331 1.13504 1.21704 2.84347 3.01587 3.32038 3.38641 3.43287 3.44328 3.69974 4.15876 4.30112 4.47414 4.60156 4.67575 4.72131 4.91514 5.02371 5.06671 5.18022 5.25389 5.32110 5.34260 5.35484 5.41144 5.47215 5.52889 5.54431 5.54892 5.74106 5.80909 5.86105 5.90273 6.05011 6.07830 6.21992 6.23481 6.32324 6.39854 6.40692 6.44647 6.46488 6.58276 6.69298 6.74600 6.94564 7.00869 7.15401 7.52562 7.59044 7.77135 7.79483 8.26130 8.47385 9.17580 9.78716 10.45818 11.36269 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023222 B = 0.002141 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.444086 B =13075.080039 C =13797.693041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.139 3.861 6 H 0.090 0.910 7 N -0.716 5.716 8 C 0.511 3.489 9 O -0.534 6.534 10 C -0.099 4.099 11 C -0.087 4.087 12 C -0.070 4.070 13 C -0.136 4.136 14 C 0.100 3.900 15 C -0.174 4.174 16 C -0.054 4.054 17 C -0.110 4.110 18 C 0.052 3.948 19 O -0.308 6.308 20 C -0.156 4.156 21 C 0.172 3.828 22 N -0.595 5.595 23 C -0.227 4.227 24 H 0.075 0.925 25 C -0.005 4.005 26 N -0.918 5.918 27 Si 0.911 3.089 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.397 0.603 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.025 0.975 49 H 0.079 0.921 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.854 10.685 -8.484 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.035 3.965 6 H 0.108 0.892 7 N -0.367 5.367 8 C 0.296 3.704 9 O -0.410 6.410 10 C -0.139 4.139 11 C -0.088 4.088 12 C -0.088 4.088 13 C -0.154 4.154 14 C 0.055 3.945 15 C -0.175 4.175 16 C -0.072 4.072 17 C -0.147 4.147 18 C -0.023 4.023 19 O -0.222 6.222 20 C -0.195 4.195 21 C 0.047 3.953 22 N -0.319 5.319 23 C -0.355 4.355 24 H 0.093 0.907 25 C -0.202 4.202 26 N -0.565 5.565 27 Si 0.741 3.259 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.231 0.769 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.123 0.877 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.043 0.957 49 H 0.097 0.903 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.536 10.314 -9.374 23.998 hybrid contribution 0.671 -0.220 1.139 1.340 sum -18.865 10.094 -8.235 22.926 Atomic orbital electron populations 1.21766 0.97254 1.00504 1.00881 1.22024 0.93619 0.99219 1.02370 1.21083 0.87175 0.93350 0.93076 0.94773 1.22080 0.83471 0.92372 0.98585 0.89164 1.46090 1.28788 1.52529 1.09289 1.20440 0.84231 0.80955 0.84745 1.90725 1.70033 1.55014 1.25229 1.20621 0.96224 1.01254 0.95774 1.19117 0.97823 0.95869 0.95995 1.20697 0.95383 0.98174 0.94506 1.20173 1.03942 0.96133 0.95202 1.19541 0.94609 0.94188 0.86128 1.20664 1.01721 0.97989 0.97148 1.20102 0.97874 0.96940 0.92283 1.21781 1.02803 0.97537 0.92580 1.23824 0.90903 0.91844 0.95765 1.86803 1.43924 1.61475 1.30033 1.23410 0.96773 0.99040 1.00305 1.21479 0.93239 0.93118 0.87447 1.44456 0.98508 1.68973 1.19971 1.18902 0.89354 1.35970 0.91305 0.90700 1.24876 0.96906 1.01168 0.97231 1.69913 1.08944 1.52791 1.24811 0.86222 0.79209 0.78988 0.81454 1.21120 1.21613 1.21146 0.93711 0.93423 0.93313 0.92461 0.91694 0.76908 0.87979 0.88082 0.85232 0.85497 0.85909 0.89003 0.89275 0.90482 0.87716 0.92142 0.92005 0.95737 0.90326 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.65 37.16 0.36 -1.72 16 2 C -0.13 -2.42 5.43 -26.73 -0.15 -2.56 16 3 C 0.16 3.13 2.91 -66.90 -0.19 2.93 16 4 H 0.03 0.64 7.69 -51.93 -0.40 0.24 16 5 C 0.14 2.46 2.01 -66.04 -0.13 2.32 16 6 H 0.09 1.76 7.35 -51.93 -0.38 1.38 16 7 N -0.72 -9.71 4.99 -51.98 -0.26 -9.97 16 8 C 0.51 7.02 7.82 -10.99 -0.09 6.93 16 9 O -0.53 -9.70 15.76 5.56 0.09 -9.61 16 10 C -0.10 -0.94 5.84 -29.04 -0.17 -1.11 16 11 C -0.09 -0.98 4.38 -104.57 -0.46 -1.44 16 12 C -0.07 -0.76 9.68 -39.67 -0.38 -1.14 16 13 C -0.14 -1.54 10.06 -39.30 -0.40 -1.93 16 14 C 0.10 1.21 7.04 -38.95 -0.27 0.93 16 15 C -0.17 -1.95 6.27 -104.10 -0.65 -2.61 16 16 C -0.05 -0.61 9.69 -39.72 -0.39 -0.99 16 17 C -0.11 -0.88 7.12 -26.52 -0.19 -1.07 16 18 C 0.05 0.40 8.01 38.06 0.30 0.71 16 19 O -0.31 -3.51 11.10 -20.16 -0.22 -3.73 16 20 C -0.16 -3.03 6.76 -24.58 -0.17 -3.20 16 21 C 0.17 4.15 5.46 -2.52 -0.01 4.14 16 22 N -0.59 -14.53 3.13 -162.51 -0.51 -15.04 16 23 C -0.23 -6.08 9.72 -15.06 -0.15 -6.23 16 24 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 25 C -0.01 -0.14 5.47 -17.43 -0.10 -0.23 16 26 N -0.92 -26.54 10.48 55.49 0.58 -25.96 16 27 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.69 7.48 -51.93 -0.39 0.30 16 34 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 35 H 0.06 1.28 7.85 -51.93 -0.41 0.87 16 36 H 0.40 4.34 8.32 -40.82 -0.34 4.00 16 37 H 0.10 0.72 8.09 -51.93 -0.42 0.30 16 38 H 0.10 0.75 8.09 -51.92 -0.42 0.33 16 39 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.02 0.65 8.11 -51.93 -0.42 0.23 16 49 H 0.08 2.11 6.74 -51.93 -0.35 1.76 16 50 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 402.86 15.07 6.07 6.07 Total: -1.00 -33.16 402.86 -10.64 -43.80 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.14 Total: 4.04 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -3.22 Total: -6.27 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.19 Total: -50.97 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.14 Total: -13.34 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.16 -10.64 -43.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087676843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.856 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds