Wall clock time and date at job start Wed Apr 1 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47257 * 2 1 4 4 H 1.09000 * 109.87449 * 54.19321 * 3 2 1 5 5 C 1.54421 * 110.00709 * 293.10048 * 3 2 1 6 6 H 1.09000 * 110.72938 * 336.66319 * 5 3 2 7 7 N 1.46502 * 110.76017 * 99.96922 * 5 3 2 8 8 C 1.34776 * 119.99957 * 199.94208 * 7 5 3 9 9 O 1.21277 * 120.00196 * 359.97438 * 8 7 5 10 10 C 1.50700 * 119.99935 * 179.97438 * 8 7 5 11 11 C 1.50698 * 109.47305 * 179.97438 * 10 8 7 12 12 C 1.38282 * 120.11719 * 90.00192 * 11 10 8 13 13 C 1.37939 * 120.35474 * 179.82973 * 12 11 10 14 14 C 1.39283 * 120.23949 * 0.09510 * 13 12 11 15 15 C 1.38882 * 118.87436 * 0.17780 * 14 13 12 16 16 C 1.37749 * 120.78404 * 359.34360 * 15 14 13 17 17 C 1.51642 * 107.04114 * 179.45620 * 15 14 13 18 18 C 1.54713 * 101.91671 * 344.49945 * 17 15 14 19 19 O 1.36132 * 129.88477 * 180.61306 * 14 13 12 20 20 C 1.55159 * 102.89674 * 218.31878 * 5 3 2 21 21 C 1.54910 * 101.61289 * 35.50492 * 20 5 3 22 22 N 1.47025 * 109.88075 * 175.20498 * 3 2 1 23 23 C 1.36934 * 125.65345 * 298.55202 * 22 3 2 24 24 H 1.08009 * 119.99414 * 347.90408 * 23 22 3 25 25 C 1.38808 * 120.00333 * 167.90268 * 23 22 3 26 26 N 1.31620 * 120.00133 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00099 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46855 * 59.99974 * 27 25 23 29 29 H 1.48492 * 109.47288 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.47220 * 300.00192 * 27 25 23 31 31 H 1.08997 * 109.47432 * 185.43562 * 1 2 3 32 32 H 1.09002 * 109.46794 * 305.44196 * 1 2 3 33 33 H 1.09004 * 109.46692 * 65.43319 * 1 2 3 34 34 H 1.09004 * 109.46883 * 239.99894 * 2 1 3 35 35 H 1.09004 * 109.46988 * 120.00141 * 2 1 3 36 36 H 0.96997 * 120.00150 * 19.93628 * 7 5 3 37 37 H 1.09002 * 109.47351 * 300.00183 * 10 8 7 38 38 H 1.09008 * 109.47253 * 60.00084 * 10 8 7 39 39 H 1.08001 * 119.82270 * 359.84862 * 12 11 10 40 40 H 1.07999 * 119.87796 * 180.11963 * 13 12 11 41 41 H 1.08000 * 120.00925 * 180.60331 * 16 15 14 42 42 H 1.09005 * 110.94074 * 226.34429 * 17 15 14 43 43 H 1.08998 * 110.97426 * 102.67177 * 17 15 14 44 44 H 1.08995 * 110.74814 * 266.98765 * 18 17 15 45 45 H 1.09000 * 110.74271 * 143.63219 * 18 17 15 46 46 H 1.08995 * 111.00598 * 277.40851 * 20 5 3 47 47 H 1.09002 * 111.00327 * 153.59210 * 20 5 3 48 48 H 1.08998 * 110.37141 * 81.80838 * 21 20 5 49 49 H 1.08998 * 110.36712 * 204.02577 * 21 20 5 50 50 H 0.96991 * 120.00316 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5982 1.9917 0.8313 5 6 1.6795 2.1303 -1.3347 6 1 1.5279 1.3910 -2.1211 7 7 0.4925 2.9749 -1.1795 8 6 -0.2228 3.3376 -2.2627 9 8 0.1165 2.9653 -3.3659 10 6 -1.4441 4.2058 -2.1030 11 6 -2.0567 4.4647 -3.4553 12 6 -3.0178 3.6066 -3.9574 13 6 -3.5844 3.8409 -5.1931 14 6 -3.1912 4.9439 -5.9473 15 6 -2.2210 5.7953 -5.4349 16 6 -1.6637 5.5649 -4.1964 17 6 -1.9920 6.8812 -6.4683 18 6 -2.6535 6.2698 -7.7261 19 8 -3.6213 5.3645 -7.1685 20 6 2.9337 2.9952 -1.6285 21 6 4.0696 2.0905 -1.0891 22 7 3.5057 1.4545 0.1156 23 6 4.2276 0.9568 1.1674 24 1 3.7275 0.6874 2.0861 25 6 5.6018 0.7983 1.0529 26 7 6.2111 1.1260 -0.0668 27 14 6.5865 0.1199 2.4880 28 1 6.0955 -1.2402 2.8263 29 1 8.0218 0.0485 2.1138 30 1 6.4250 1.0114 3.6646 31 1 -0.3634 -1.0230 0.0973 32 1 -0.3633 0.5959 0.8373 33 1 -0.3633 0.4273 -0.9347 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.2212 3.2729 -0.2972 37 1 -2.1693 3.6992 -1.4662 38 1 -1.1590 5.1536 -1.6463 39 1 -3.3268 2.7486 -3.3789 40 1 -4.3357 3.1668 -5.5770 41 1 -0.9171 6.2405 -3.8058 42 1 -0.9268 7.0468 -6.6298 43 1 -2.4885 7.8070 -6.1780 44 1 -1.9197 5.7300 -8.3246 45 1 -3.1438 7.0422 -8.3186 46 1 2.8939 3.9388 -1.0843 47 1 3.0470 3.1682 -2.6987 48 1 4.3359 1.3346 -1.8278 49 1 4.9419 2.6907 -0.8301 50 1 7.1713 1.0149 -0.1469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087676843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:24 Heat of formation + Delta-G solvation = -43.975544 kcal Electronic energy + Delta-G solvation = -30013.723918 eV Core-core repulsion = 26005.707604 eV Total energy + Delta-G solvation = -4008.016313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.02584 -41.01049 -39.44951 -38.29451 -35.55201 -34.26178 -33.66825 -33.52910 -32.94749 -30.83671 -30.15725 -28.72112 -27.61332 -26.20765 -24.38086 -23.73319 -22.93097 -22.50045 -21.98370 -21.45666 -20.77070 -18.74719 -18.32771 -17.92258 -17.71752 -17.33556 -17.04415 -16.69527 -16.30328 -15.76957 -15.70753 -15.31147 -15.11622 -15.03708 -14.57665 -14.40599 -14.29668 -14.10234 -13.88717 -13.76140 -13.53992 -13.37244 -13.23985 -12.90760 -12.79482 -12.72201 -12.65355 -12.54302 -12.45471 -12.18952 -12.05690 -11.96913 -11.86727 -11.72233 -11.67119 -11.54087 -11.33723 -10.79481 -10.65577 -9.90842 -9.80149 -8.98901 -8.83876 -7.83145 -5.21328 0.32811 0.40669 1.47451 1.50324 1.56394 1.78107 2.17829 2.38441 2.53069 2.82214 3.35634 3.48674 3.59792 3.64693 3.83234 3.87137 3.94801 3.98832 4.12166 4.15839 4.22691 4.27449 4.39807 4.43452 4.44294 4.46058 4.64080 4.65775 4.68311 4.69071 4.73538 4.78646 4.86636 4.90088 4.92977 5.04000 5.16096 5.19509 5.22933 5.29699 5.35129 5.42834 5.48574 5.52790 5.58542 5.61978 5.68627 5.72310 5.73653 6.24064 6.24587 6.71296 7.09977 7.41402 7.78384 8.44812 9.27032 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023222 B = 0.002141 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.444086 B =13075.080039 C =13797.693041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.128 4.128 3 C 0.159 3.841 4 H 0.056 0.944 5 C 0.159 3.841 6 H 0.071 0.929 7 N -0.703 5.703 8 C 0.513 3.487 9 O -0.581 6.581 10 C -0.087 4.087 11 C -0.100 4.100 12 C -0.078 4.078 13 C -0.151 4.151 14 C 0.077 3.923 15 C -0.189 4.189 16 C -0.069 4.069 17 C -0.108 4.108 18 C 0.045 3.955 19 O -0.327 6.327 20 C -0.140 4.140 21 C 0.180 3.820 22 N -0.614 5.614 23 C -0.230 4.230 24 H 0.084 0.916 25 C -0.067 4.067 26 N -0.952 5.952 27 Si 0.976 3.024 28 H -0.278 1.278 29 H -0.299 1.299 30 H -0.274 1.274 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.032 0.968 35 H 0.048 0.952 36 H 0.415 0.585 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.148 0.852 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.133 0.867 46 H 0.074 0.926 47 H 0.060 0.940 48 H -0.012 1.012 49 H 0.045 0.955 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.324 11.809 -7.011 26.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C 0.052 3.948 4 H 0.074 0.926 5 C 0.053 3.947 6 H 0.089 0.911 7 N -0.355 5.355 8 C 0.301 3.699 9 O -0.460 6.460 10 C -0.126 4.126 11 C -0.100 4.100 12 C -0.096 4.096 13 C -0.170 4.170 14 C 0.033 3.967 15 C -0.190 4.190 16 C -0.087 4.087 17 C -0.144 4.144 18 C -0.029 4.029 19 O -0.242 6.242 20 C -0.180 4.180 21 C 0.054 3.946 22 N -0.339 5.339 23 C -0.359 4.359 24 H 0.102 0.898 25 C -0.260 4.260 26 N -0.601 5.601 27 Si 0.804 3.196 28 H -0.204 1.204 29 H -0.225 1.225 30 H -0.200 1.200 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.253 0.747 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.166 0.834 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.097 0.903 45 H 0.151 0.849 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.006 0.994 49 H 0.063 0.937 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.070 11.457 -7.863 26.080 hybrid contribution 1.394 -0.563 0.618 1.625 sum -20.677 10.894 -7.245 24.468 Atomic orbital electron populations 1.21650 0.93500 1.01949 1.02000 1.21921 0.96822 0.97673 1.00333 1.21290 0.84386 0.94562 0.94564 0.92640 1.21558 0.84340 0.91894 0.96884 0.91130 1.45856 1.27295 1.51808 1.10579 1.21193 0.84765 0.80313 0.83628 1.90723 1.71380 1.56797 1.27121 1.20660 0.94463 1.01880 0.95632 1.19394 0.97911 0.95853 0.96868 1.20986 0.95369 0.98701 0.94517 1.20461 1.04431 0.96426 0.95671 1.19854 0.95320 0.94888 0.86678 1.21076 1.01378 0.98786 0.97713 1.20390 0.98224 0.97512 0.92536 1.21869 1.03603 0.97292 0.91678 1.24105 0.90844 0.92021 0.95914 1.86769 1.45159 1.62254 1.29999 1.23207 0.95923 0.98798 1.00073 1.21168 0.94004 0.92455 0.86962 1.44707 1.00849 1.68981 1.19325 1.19292 0.89767 1.34594 0.92209 0.89785 1.25698 0.98191 1.02352 0.99721 1.70140 1.08505 1.54572 1.26851 0.85194 0.77062 0.78568 0.78767 1.20446 1.22533 1.19965 0.92463 0.91127 0.92977 0.94951 0.93357 0.74740 0.84603 0.85231 0.83442 0.84597 0.84768 0.88092 0.87695 0.90309 0.84909 0.90759 0.92100 0.99445 0.93671 0.94468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.65 71.98 0.69 -2.69 16 2 C -0.13 -4.54 5.43 30.60 0.17 -4.38 16 3 C 0.16 5.96 2.91 45.37 0.13 6.09 16 4 H 0.06 1.90 7.69 -2.39 -0.02 1.88 16 5 C 0.16 5.45 2.01 46.21 0.09 5.54 16 6 H 0.07 2.75 7.35 -2.39 -0.02 2.73 16 7 N -0.70 -16.93 4.99 -436.76 -2.18 -19.11 16 8 C 0.51 12.67 7.82 87.66 0.69 13.36 16 9 O -0.58 -20.42 15.76 -3.02 -0.05 -20.47 16 10 C -0.09 -1.31 5.84 29.10 0.17 -1.14 16 11 C -0.10 -2.00 4.38 -19.83 -0.09 -2.09 16 12 C -0.08 -1.57 9.68 22.21 0.21 -1.35 16 13 C -0.15 -3.33 10.06 22.45 0.23 -3.11 16 14 C 0.08 1.83 7.04 22.68 0.16 1.99 16 15 C -0.19 -4.04 6.27 -19.53 -0.12 -4.16 16 16 C -0.07 -1.43 9.69 22.18 0.22 -1.22 16 17 C -0.11 -1.57 7.12 30.73 0.22 -1.35 16 18 C 0.05 0.65 8.01 72.57 0.58 1.23 16 19 O -0.33 -7.30 11.10 -95.06 -1.06 -8.36 16 20 C -0.14 -5.47 6.76 31.99 0.22 -5.25 16 21 C 0.18 9.02 5.46 86.85 0.47 9.50 16 22 N -0.61 -30.37 3.13 -668.06 -2.09 -32.46 16 23 C -0.23 -12.39 9.72 84.03 0.82 -11.57 16 24 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 25 C -0.07 -3.74 5.47 84.86 0.46 -3.28 16 26 N -0.95 -57.31 10.48 21.65 0.23 -57.09 16 27 Si 0.98 45.18 29.55 68.60 2.03 47.20 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 29 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 30 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.30 7.48 -2.39 -0.02 1.29 16 34 H 0.03 1.28 8.04 -2.38 -0.02 1.26 16 35 H 0.05 1.86 7.85 -2.39 -0.02 1.84 16 36 H 0.42 7.21 8.32 -92.71 -0.77 6.44 16 37 H 0.14 1.19 8.09 -2.39 -0.02 1.17 16 38 H 0.13 1.29 8.09 -2.38 -0.02 1.27 16 39 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 41 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 47 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 48 H -0.01 -0.70 8.11 -2.39 -0.02 -0.72 16 49 H 0.04 2.54 6.74 -2.39 -0.02 2.53 16 50 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -75.96 402.86 2.36 -73.59 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.16 Total: 20.57 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 5.32 Total: -3.88 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -4.04 Total: -108.65 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -1.10 Total: -28.83 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -75.96 2.36 -73.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087676843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.617 kcal (2) G-P(sol) polarization free energy of solvation -75.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds