Wall clock time and date at job start Wed Apr 1 2020 05:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46627 * 2 1 4 4 H 1.08998 * 109.87583 * 305.29608 * 3 2 1 5 5 C 1.54330 * 109.87961 * 184.28305 * 3 2 1 6 6 H 1.09002 * 110.72025 * 336.59767 * 5 3 2 7 7 N 1.46495 * 110.71896 * 99.87153 * 5 3 2 8 8 C 1.34777 * 119.99949 * 199.97356 * 7 5 3 9 9 O 1.21577 * 120.00021 * 0.02562 * 8 7 5 10 10 C 1.47606 * 119.99877 * 180.02562 * 8 7 5 11 11 C 1.39756 * 120.26505 * 359.72516 * 10 8 7 12 12 C 1.37473 * 120.19736 * 179.89511 * 11 10 8 13 13 C 1.39591 * 120.42831 * 0.60633 * 12 11 10 14 14 C 1.39181 * 119.10490 * 359.37281 * 13 12 11 15 15 C 1.37304 * 120.93865 * 0.43376 * 14 13 12 16 16 C 1.51678 * 106.99481 * 180.69560 * 14 13 12 17 17 H 1.08997 * 110.94788 * 257.34208 * 16 14 13 18 18 C 1.53002 * 110.94716 * 133.67717 * 16 14 13 19 19 C 1.54709 * 101.89370 * 15.49392 * 16 14 13 20 20 O 1.35996 * 129.71374 * 179.05238 * 13 12 11 21 21 C 1.55160 * 102.93962 * 218.23801 * 5 3 2 22 22 C 1.54903 * 101.58625 * 35.50224 * 21 5 3 23 23 N 1.47296 * 110.00280 * 66.36224 * 3 2 1 24 24 C 1.36931 * 125.79204 * 298.42670 * 23 3 2 25 25 H 1.07999 * 120.00172 * 337.08632 * 24 23 3 26 26 C 1.38809 * 120.00015 * 157.08562 * 24 23 3 27 27 N 1.31616 * 120.00165 * 158.77507 * 26 24 23 28 28 Si 1.86799 * 119.99924 * 338.77415 * 26 24 23 29 29 H 1.48497 * 109.47182 * 90.68670 * 28 26 24 30 30 H 1.48509 * 109.47052 * 210.68923 * 28 26 24 31 31 H 1.48501 * 109.46990 * 330.68175 * 28 26 24 32 32 H 1.08999 * 109.46709 * 172.36710 * 1 2 3 33 33 H 1.09001 * 109.47018 * 292.36116 * 1 2 3 34 34 H 1.08996 * 109.47585 * 52.36576 * 1 2 3 35 35 H 1.09000 * 109.47063 * 240.00215 * 2 1 3 36 36 H 1.08994 * 109.47132 * 119.99943 * 2 1 3 37 37 H 0.97000 * 120.00177 * 19.97929 * 7 5 3 38 38 H 1.07991 * 119.89978 * 0.17409 * 11 10 8 39 39 H 1.07999 * 119.78162 * 180.35147 * 12 11 10 40 40 H 1.07997 * 120.07269 * 179.81038 * 15 14 13 41 41 H 1.09001 * 109.46772 * 60.00156 * 18 16 14 42 42 H 1.08994 * 109.47348 * 180.02562 * 18 16 14 43 43 H 1.09006 * 109.46962 * 300.00723 * 18 16 14 44 44 H 1.08996 * 110.74461 * 92.96790 * 19 16 14 45 45 H 1.09006 * 110.73953 * 216.29707 * 19 16 14 46 46 H 1.09007 * 110.99986 * 277.42286 * 21 5 3 47 47 H 1.09001 * 111.03589 * 153.59154 * 21 5 3 48 48 H 1.09001 * 110.36659 * 81.82560 * 22 21 5 49 49 H 1.08997 * 110.36607 * 204.04531 * 22 21 5 50 50 H 0.97006 * 120.00335 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6050 1.9893 -0.8366 5 6 3.5794 1.4550 -0.1084 6 1 3.9985 0.5127 0.2446 7 7 3.9998 1.7277 -1.4850 8 6 5.2417 1.3944 -1.8888 9 8 6.0129 0.8670 -1.1108 10 6 5.6655 1.6696 -3.2757 11 6 4.7816 2.2703 -4.1762 12 6 5.1785 2.5279 -5.4670 13 6 6.4614 2.1816 -5.8946 14 6 7.3373 1.5842 -4.9930 15 6 6.9524 1.3260 -3.7005 16 6 8.6396 1.3446 -5.7326 17 1 8.7388 0.2973 -6.0178 18 6 9.8365 1.7956 -4.8930 19 6 8.4680 2.2436 -6.9799 20 8 7.0397 2.3303 -7.1165 21 6 3.9843 2.6219 0.8307 22 6 2.9274 2.4966 1.9562 23 7 1.6846 2.1025 1.2680 24 6 0.4138 2.3153 1.7314 25 1 -0.4157 2.3419 1.0403 26 6 0.1916 2.4969 3.0895 27 7 -0.9028 3.1002 3.5025 28 14 1.4459 1.8849 4.3311 29 1 2.4274 2.9624 4.6154 30 1 0.7527 1.5024 5.5876 31 1 2.1546 0.7031 3.7774 32 1 -0.3633 -1.0186 -0.1365 33 1 -0.3633 0.3910 0.9504 34 1 -0.3634 0.6275 -0.8138 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 3.3844 2.1481 -2.1058 38 1 3.7854 2.5369 -3.8560 39 1 4.4918 2.9976 -6.1557 40 1 7.6425 0.8591 -3.0134 41 1 9.8565 1.2350 -3.9584 42 1 10.7578 1.6133 -5.4462 43 1 9.7477 2.8602 -4.6762 44 1 8.9000 3.2294 -6.8077 45 1 8.9120 1.7744 -7.8580 46 1 3.8999 3.5814 0.3203 47 1 4.9912 2.4774 1.2224 48 1 3.2243 1.7298 2.6717 49 1 2.7947 3.4539 2.4602 50 1 -1.0579 3.2274 4.4515 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087695859.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:27 Heat of formation + Delta-G solvation = -37.378944 kcal Electronic energy + Delta-G solvation = -30249.641986 eV Core-core repulsion = 26241.911723 eV Total energy + Delta-G solvation = -4007.730263 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.31806 -41.15424 -39.63307 -38.00338 -35.74222 -35.11442 -34.19715 -33.90011 -31.79164 -31.23453 -30.48165 -28.62630 -27.54312 -26.33908 -24.74562 -23.96287 -23.85640 -22.36587 -21.86262 -21.52809 -20.86196 -18.89979 -18.70416 -18.49964 -17.76948 -17.13684 -17.03733 -16.97987 -16.27559 -15.94518 -15.51735 -15.37254 -15.31385 -14.82703 -14.76927 -14.71948 -14.48207 -14.26727 -14.05859 -13.86197 -13.80807 -13.65964 -13.48520 -13.10430 -13.05624 -12.95383 -12.68748 -12.60628 -12.36146 -12.10691 -12.06197 -11.97312 -11.79276 -11.68620 -11.64853 -11.52154 -11.27664 -11.03524 -10.70804 -10.11582 -10.02097 -9.24694 -8.97648 -8.12290 -5.39103 -0.23208 0.25545 1.31469 1.40556 1.47325 1.74444 2.02005 2.24327 2.44755 2.74966 3.08873 3.28822 3.33249 3.54943 3.63234 3.71661 3.76271 3.80240 4.02853 4.10117 4.12177 4.17908 4.24552 4.39722 4.42723 4.46191 4.48162 4.55450 4.60341 4.67409 4.68328 4.80928 4.85135 4.91929 4.99553 5.01845 5.02942 5.06665 5.09604 5.15232 5.20241 5.24398 5.25384 5.31289 5.35368 5.42393 5.58232 5.68503 5.81074 6.06124 6.18019 6.52249 6.79961 7.18266 7.58570 8.15959 9.06997 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023023 B = 0.002337 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.871929 B =11979.135097 C =12493.461737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.156 3.844 4 H 0.062 0.938 5 C 0.149 3.851 6 H 0.085 0.915 7 N -0.699 5.699 8 C 0.565 3.435 9 O -0.580 6.580 10 C -0.177 4.177 11 C -0.040 4.040 12 C -0.148 4.148 13 C 0.123 3.877 14 C -0.187 4.187 15 C -0.018 4.018 16 C -0.079 4.079 17 H 0.107 0.893 18 C -0.140 4.140 19 C 0.050 3.950 20 O -0.314 6.314 21 C -0.127 4.127 22 C 0.105 3.895 23 N -0.613 5.613 24 C -0.201 4.201 25 H 0.076 0.924 26 C -0.034 4.034 27 N -0.954 5.954 28 Si 0.928 3.072 29 H -0.281 1.281 30 H -0.313 1.313 31 H -0.267 1.267 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.414 0.586 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.129 0.871 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.134 0.866 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.019 0.981 49 H 0.044 0.956 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.178 -2.285 -24.284 31.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.050 3.950 4 H 0.080 0.920 5 C 0.043 3.957 6 H 0.103 0.897 7 N -0.351 5.351 8 C 0.355 3.645 9 O -0.461 6.461 10 C -0.180 4.180 11 C -0.059 4.059 12 C -0.167 4.167 13 C 0.077 3.923 14 C -0.188 4.188 15 C -0.037 4.037 16 C -0.098 4.098 17 H 0.125 0.875 18 C -0.197 4.197 19 C -0.024 4.024 20 O -0.228 6.228 21 C -0.167 4.167 22 C -0.020 4.020 23 N -0.339 5.339 24 C -0.329 4.329 25 H 0.094 0.906 26 C -0.228 4.228 27 N -0.602 5.602 28 Si 0.758 3.242 29 H -0.208 1.208 30 H -0.242 1.242 31 H -0.193 1.193 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.252 0.748 38 H 0.178 0.822 39 H 0.174 0.826 40 H 0.146 0.854 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.076 0.924 44 H 0.109 0.891 45 H 0.152 0.848 46 H 0.103 0.897 47 H 0.096 0.904 48 H 0.037 0.963 49 H 0.063 0.937 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 20.450 -2.550 -23.817 31.495 hybrid contribution -0.095 -0.161 1.344 1.357 sum 20.355 -2.712 -22.473 30.442 Atomic orbital electron populations 1.21818 0.95782 1.00501 1.02384 1.21859 0.96718 0.96772 1.00732 1.21391 0.91332 0.92856 0.89433 0.91993 1.21748 0.93987 0.98356 0.81574 0.89656 1.45707 1.14454 1.62260 1.12655 1.18378 0.81441 0.77251 0.87452 1.90751 1.53699 1.45197 1.56431 1.19658 0.96347 1.08662 0.93339 1.21270 0.99477 0.93569 0.91563 1.20461 0.94501 1.04982 0.96713 1.20120 0.94489 0.93109 0.84614 1.20916 0.98468 1.04821 0.94631 1.20319 0.94517 0.94764 0.94089 1.21508 0.92055 1.01918 0.94282 0.87538 1.21733 0.96616 1.01533 0.99806 1.24304 0.77358 1.01085 0.99612 1.86789 1.22325 1.88005 1.25665 1.23030 0.98036 0.99302 0.96297 1.21985 0.87005 0.97622 0.95382 1.44919 1.01048 1.66703 1.21247 1.18493 0.83824 1.39731 0.90902 0.90643 1.25558 0.97699 1.01115 0.98424 1.69916 1.29673 1.45619 1.14992 0.86187 0.79187 0.79709 0.79069 1.20815 1.24225 1.19258 0.92896 0.93002 0.93044 0.90619 0.94151 0.74791 0.82178 0.82625 0.85352 0.92381 0.89668 0.92427 0.89086 0.84779 0.89724 0.90363 0.96296 0.93725 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 9.00 71.98 0.65 -4.61 16 2 C -0.12 -4.11 5.46 30.60 0.17 -3.94 16 3 C 0.16 5.45 2.99 45.29 0.14 5.59 16 4 H 0.06 2.02 7.68 -2.39 -0.02 2.00 16 5 C 0.15 4.66 2.76 46.18 0.13 4.78 16 6 H 0.09 2.92 7.41 -2.39 -0.02 2.91 16 7 N -0.70 -17.18 5.16 -440.00 -2.27 -19.45 16 8 C 0.57 15.30 7.77 86.72 0.67 15.97 16 9 O -0.58 -20.12 16.09 -3.96 -0.06 -20.18 16 10 C -0.18 -3.84 5.88 -20.06 -0.12 -3.96 16 11 C -0.04 -0.65 9.52 22.46 0.21 -0.44 16 12 C -0.15 -2.32 10.05 22.42 0.23 -2.10 16 13 C 0.12 2.18 7.04 22.82 0.16 2.34 16 14 C -0.19 -3.30 5.68 -19.55 -0.11 -3.41 16 15 C -0.02 -0.38 9.46 22.43 0.21 -0.17 16 16 C -0.08 -0.90 3.73 -10.64 -0.04 -0.94 16 17 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 18 C -0.14 -1.30 9.19 71.98 0.66 -0.64 16 19 C 0.05 0.46 7.55 72.56 0.55 1.01 16 20 O -0.31 -5.11 11.09 -93.51 -1.04 -6.15 16 21 C -0.13 -4.24 6.77 31.99 0.22 -4.02 16 22 C 0.11 4.43 4.77 86.85 0.41 4.84 16 23 N -0.61 -27.46 2.89 -667.61 -1.93 -29.40 16 24 C -0.20 -10.74 7.98 84.03 0.67 -10.06 16 25 H 0.08 4.29 7.15 -2.91 -0.02 4.27 16 26 C -0.03 -1.93 5.44 84.86 0.46 -1.47 16 27 N -0.95 -59.00 13.97 21.65 0.30 -58.70 16 28 Si 0.93 47.05 24.42 68.60 1.67 48.72 16 29 H -0.28 -13.81 6.94 99.48 0.69 -13.12 16 30 H -0.31 -16.27 7.11 99.48 0.71 -15.57 16 31 H -0.27 -13.17 6.39 99.48 0.64 -12.54 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.05 2.29 5.45 -2.39 -0.01 2.28 16 34 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.41 7.69 6.35 -92.71 -0.59 7.10 16 38 H 0.16 1.74 6.40 -2.91 -0.02 1.72 16 39 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 40 H 0.13 2.87 7.66 -2.91 -0.02 2.85 16 41 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.06 0.59 8.07 -2.38 -0.02 0.57 16 44 H 0.09 0.66 7.87 -2.39 -0.02 0.64 16 45 H 0.13 0.51 8.14 -2.38 -0.02 0.49 16 46 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 47 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 48 H 0.02 0.86 5.28 -2.39 -0.01 0.84 16 49 H 0.04 2.01 7.22 -2.39 -0.02 1.99 16 50 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -71.71 389.41 2.22 -69.49 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.28 Total: 16.89 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 5.27 Total: -1.23 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -3.90 Total: -107.54 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -1.10 Total: -26.33 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.67 Total: 48.72 kcal Total: -71.71 2.22 -69.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087695859.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.112 kcal (2) G-P(sol) polarization free energy of solvation -71.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds