Wall clock time and date at job start Wed Apr 1 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47107 * 2 1 4 4 C 1.50701 * 109.46829 * 179.97438 * 3 2 1 5 5 O 1.21277 * 120.00025 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99805 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99810 * 179.97438 * 6 4 3 8 8 H 1.09001 * 115.51679 * 9.58116 * 7 6 4 9 9 C 1.53003 * 117.44267 * 224.22274 * 7 6 4 10 10 H 1.09001 * 119.52347 * 4.09756 * 9 7 6 11 11 C 1.54375 * 118.12498 * 160.68479 * 9 7 6 12 12 N 1.48566 * 104.59154 * 87.23464 * 11 9 7 13 13 C 1.46904 * 110.99552 * 200.95553 * 12 11 9 14 14 C 1.50703 * 109.47038 * 189.99726 * 13 12 11 15 15 C 1.38300 * 119.93352 * 269.73148 * 14 13 12 16 16 C 1.38096 * 120.07221 * 179.72107 * 15 14 13 17 17 C 1.38887 * 119.92486 * 0.57269 * 16 15 14 18 18 O 1.35754 * 120.06557 * 179.68187 * 17 16 15 19 19 C 1.34832 * 116.99796 * 174.48578 * 18 17 16 20 20 H 1.08005 * 120.00131 * 5.06027 * 19 18 17 21 21 C 1.38650 * 119.99655 * 185.05618 * 19 18 17 22 22 N 1.31549 * 120.00566 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 119.99582 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46997 * 60.00353 * 23 21 19 25 25 H 1.48497 * 109.46719 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47285 * 300.00071 * 23 21 19 27 27 C 1.38879 * 119.86099 * 359.69927 * 17 16 15 28 28 C 1.38097 * 119.93237 * 0.02562 * 27 17 16 29 29 C 1.52140 * 104.44204 * 320.24516 * 12 11 9 30 30 C 1.53006 * 117.44127 * 154.99649 * 7 6 4 31 31 H 1.08996 * 119.52516 * 355.91069 * 30 7 6 32 32 H 1.09004 * 109.46799 * 60.00029 * 1 2 3 33 33 H 1.08997 * 109.47213 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47160 * 300.00253 * 1 2 3 35 35 H 1.08997 * 109.47160 * 239.99747 * 2 1 3 36 36 H 1.08996 * 109.46955 * 120.00256 * 2 1 3 37 37 H 1.08996 * 109.47422 * 299.99970 * 3 2 1 38 38 H 1.09006 * 109.47168 * 60.00114 * 3 2 1 39 39 H 0.97002 * 119.99738 * 359.97438 * 6 4 3 40 40 H 1.09004 * 110.41087 * 206.00887 * 11 9 7 41 41 H 1.08998 * 110.41876 * 328.45375 * 11 9 7 42 42 H 1.08998 * 109.47733 * 309.99922 * 13 12 11 43 43 H 1.09005 * 109.47079 * 70.00192 * 13 12 11 44 44 H 1.08005 * 119.96474 * 359.97438 * 15 14 13 45 45 H 1.07997 * 120.03750 * 180.27286 * 16 15 14 46 46 H 0.96997 * 120.00383 * 179.97438 * 22 21 19 47 47 H 1.08004 * 120.03085 * 180.02562 * 27 17 16 48 48 H 1.08003 * 119.96018 * 179.97438 * 28 27 17 49 49 H 1.09000 * 111.92119 * 281.08550 * 29 12 11 50 50 H 1.09004 * 110.52785 * 157.51148 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2209 2.6097 0.0013 7 6 5.6859 2.6096 0.0025 8 1 6.1556 1.6396 -0.1610 9 6 6.3904 3.5826 0.9501 10 1 5.7978 4.1893 1.6348 11 6 7.8657 3.3069 1.3115 12 7 8.6451 3.9718 0.2356 13 6 9.9987 3.4087 0.1413 14 6 10.8339 4.2602 -0.7798 15 6 10.8769 3.9760 -2.1326 16 6 11.6368 4.7579 -2.9801 17 6 12.3677 5.8234 -2.4708 18 8 13.1208 6.5899 -3.3004 19 6 13.7133 7.6747 -2.7618 20 1 13.6456 7.8553 -1.6991 21 6 14.4096 8.5583 -3.5723 22 7 14.4926 8.3381 -4.8665 23 14 15.2312 10.0609 -2.8259 24 1 16.2355 9.6282 -1.8212 25 1 15.9058 10.8388 -3.8960 26 1 14.2061 10.9098 -2.1674 27 6 12.3269 6.1027 -1.1110 28 6 11.5606 5.3205 -0.2696 29 6 7.8564 3.6892 -1.0344 30 6 6.3916 3.8402 -0.5708 31 1 5.7999 4.6388 -1.0183 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8899 37 1 1.6767 1.9564 -0.8899 38 1 1.6767 1.9564 0.8900 39 1 3.7359 3.4497 0.0009 40 1 8.1075 3.7427 2.2809 41 1 8.0621 2.2348 1.3161 42 1 10.4542 3.3899 1.1314 43 1 9.9434 2.3938 -0.2525 44 1 10.3124 3.1441 -2.5273 45 1 11.6665 4.5381 -4.0371 46 1 14.9794 8.9565 -5.4335 47 1 12.8939 6.9309 -0.7120 48 1 11.5288 5.5371 0.7881 49 1 8.0348 2.6810 -1.4083 50 1 8.0902 4.4272 -1.8018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113781616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:14 Heat of formation + Delta-G solvation = -7.841636 kcal Electronic energy + Delta-G solvation = -28396.954819 eV Core-core repulsion = 24390.505390 eV Total energy + Delta-G solvation = -4006.449429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.60581 -39.48948 -38.87304 -36.80287 -35.23372 -34.75270 -33.02639 -32.20020 -30.17983 -29.71547 -28.56550 -28.28607 -26.01689 -24.97571 -23.03603 -22.06068 -21.88082 -21.21552 -20.58382 -20.49224 -20.04519 -17.95766 -17.44918 -17.16422 -16.91269 -16.27317 -15.56744 -15.06388 -14.89759 -14.61939 -14.53491 -14.48279 -14.09243 -13.74326 -13.57252 -13.53496 -13.42383 -13.16967 -12.77955 -12.66558 -12.60412 -12.45352 -12.26743 -12.13339 -11.71781 -11.68643 -11.64128 -11.37186 -11.23629 -11.19822 -11.05556 -10.76843 -10.67296 -10.51413 -10.42144 -10.30736 -10.17971 -9.30918 -9.10994 -8.81348 -8.45469 -8.13863 -7.15167 -6.43284 -4.02121 2.18074 2.24525 2.31084 2.59325 3.14241 3.15204 3.18053 3.41826 3.93839 3.98495 4.23328 4.34329 4.40478 4.44041 4.54062 4.57513 4.75365 4.87190 4.92024 5.01928 5.04123 5.11435 5.13333 5.25646 5.26962 5.32308 5.34219 5.39954 5.47892 5.55594 5.62298 5.69453 5.74219 5.75800 5.80833 5.84430 5.86985 5.90980 5.99649 6.14006 6.23433 6.43132 6.67491 6.72687 6.94574 6.99165 7.05194 7.10676 7.27610 7.43850 7.47110 7.81395 7.85645 8.01827 9.02410 9.72822 10.74719 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026168 B = 0.001565 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.738607 B =17881.696917 C =18093.818308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.140 4.140 4 C 0.515 3.485 5 O -0.537 6.537 6 N -0.702 5.702 7 C 0.105 3.895 8 H 0.133 0.867 9 C -0.168 4.168 10 H 0.117 0.883 11 C 0.061 3.939 12 N -0.498 5.498 13 C 0.100 3.900 14 C -0.177 4.177 15 C -0.068 4.068 16 C -0.193 4.193 17 C 0.155 3.845 18 O -0.179 6.179 19 C -0.392 4.392 20 H 0.091 0.909 21 C 0.040 3.960 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.235 4.235 28 C -0.050 4.050 29 C 0.063 3.937 30 C -0.166 4.166 31 H 0.118 0.882 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.403 0.597 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.037 0.963 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.270 0.730 47 H 0.126 0.874 48 H 0.106 0.894 49 H 0.053 0.947 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.061 -11.276 11.738 29.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.180 4.180 4 C 0.303 3.697 5 O -0.413 6.413 6 N -0.352 5.352 7 C -0.002 4.002 8 H 0.150 0.850 9 C -0.188 4.188 10 H 0.135 0.865 11 C -0.067 4.067 12 N -0.223 5.223 13 C -0.027 4.027 14 C -0.178 4.178 15 C -0.086 4.086 16 C -0.213 4.213 17 C 0.101 3.899 18 O -0.082 6.082 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.254 4.254 28 C -0.069 4.069 29 C -0.064 4.064 30 C -0.186 4.186 31 H 0.136 0.864 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.237 0.763 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.055 0.945 44 H 0.124 0.876 45 H 0.133 0.867 46 H 0.080 0.920 47 H 0.143 0.857 48 H 0.124 0.876 49 H 0.071 0.929 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.378 -11.380 11.392 28.386 hybrid contribution 0.121 0.607 0.277 0.678 sum -23.256 -10.773 11.669 28.161 Atomic orbital electron populations 1.21796 0.95348 1.02107 1.01814 1.21289 0.95367 0.94484 1.03697 1.21734 0.91172 1.00526 1.04560 1.20837 0.90414 0.83300 0.75175 1.90717 1.70507 1.31247 1.48807 1.45377 1.05606 1.09030 1.75178 1.21806 0.79945 0.96442 1.02008 0.84980 1.23938 0.97325 1.03993 0.93565 0.86461 1.22592 0.90030 0.97331 0.96791 1.66745 1.01402 1.52056 1.02069 1.20964 0.88150 0.94699 0.98929 1.19001 1.04244 1.00890 0.93649 1.20459 0.97673 0.97921 0.92585 1.20163 1.03024 0.98431 0.99644 1.19393 0.89668 0.91140 0.89660 1.83977 1.54424 1.34548 1.35279 1.21279 1.31745 0.99697 0.94080 0.89126 1.25273 0.97254 0.98683 0.95246 1.70024 1.39457 1.36718 1.03649 0.85796 0.79261 0.80017 0.78448 1.19514 1.20296 1.19501 1.21150 1.06480 1.04255 0.93518 1.20545 0.94669 0.93462 0.98217 1.23280 0.88800 1.00683 0.93619 1.23899 0.97850 0.99963 0.96854 0.86434 0.92623 0.92303 0.92658 0.91142 0.91185 0.88705 0.88768 0.76269 0.89455 0.93673 0.90763 0.94492 0.87598 0.86671 0.92006 0.85651 0.87599 0.92922 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.11 -0.68 5.22 -26.73 -0.14 -0.82 16 3 C -0.14 -0.71 5.70 -27.88 -0.16 -0.87 16 4 C 0.52 4.49 7.83 -10.98 -0.09 4.40 16 5 O -0.54 -7.00 15.55 5.56 0.09 -6.92 16 6 N -0.70 -5.10 5.56 -53.80 -0.30 -5.40 16 7 C 0.10 0.96 5.97 -67.93 -0.41 0.56 16 8 H 0.13 1.48 7.40 -51.93 -0.38 1.10 16 9 C -0.17 -1.52 7.05 -89.24 -0.63 -2.15 16 10 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 11 C 0.06 0.62 6.27 -2.18 -0.01 0.61 16 12 N -0.50 -6.32 5.39 -228.12 -1.23 -7.55 16 13 C 0.10 1.35 4.99 -4.97 -0.02 1.32 16 14 C -0.18 -2.99 5.20 -104.58 -0.54 -3.54 16 15 C -0.07 -1.20 8.96 -39.61 -0.35 -1.55 16 16 C -0.19 -4.09 9.99 -39.39 -0.39 -4.48 16 17 C 0.16 3.77 6.65 -39.10 -0.26 3.51 16 18 O -0.18 -5.14 9.76 0.03 0.00 -5.14 16 19 C -0.39 -11.01 9.49 30.88 0.29 -10.71 16 20 H 0.09 2.36 5.20 -52.48 -0.27 2.08 16 21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -25.40 13.67 55.48 0.76 -24.65 16 23 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 27 C -0.23 -5.13 9.17 -39.40 -0.36 -5.49 16 28 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 29 C 0.06 0.74 5.70 -0.11 0.00 0.74 16 30 C -0.17 -1.58 6.96 -89.23 -0.62 -2.20 16 31 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 36 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.40 1.78 8.83 -40.82 -0.36 1.42 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.46 8.00 -51.93 -0.42 0.04 16 42 H 0.07 0.93 8.03 -51.93 -0.42 0.52 16 43 H 0.04 0.47 7.79 -51.93 -0.40 0.07 16 44 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 45 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 46 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.13 2.75 5.64 -52.48 -0.30 2.46 16 48 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 49 H 0.05 0.60 7.88 -51.93 -0.41 0.19 16 50 H 0.09 1.25 7.96 -51.93 -0.41 0.84 16 LS Contribution 411.58 15.07 6.20 6.20 Total: -1.00 -33.08 411.58 -11.31 -44.39 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -8.00 Total: 4.78 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -3.81 Total: -21.27 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.77 Total: -37.59 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.08 -11.31 -44.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113781616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.548 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds