Wall clock time and date at job start Wed Apr 1 2020 04:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47415 * 2 1 4 4 C 1.52993 * 109.47415 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47215 * 179.97438 * 4 3 2 6 6 C 1.35705 * 117.00208 * 180.02562 * 5 4 3 7 7 C 1.39000 * 119.91213 * 180.02562 * 6 5 4 8 8 C 1.37703 * 120.08426 * 179.97438 * 7 6 5 9 9 C 1.39725 * 119.91846 * 359.97438 * 8 7 6 10 10 C 1.47605 * 120.09211 * 180.02562 * 9 8 7 11 11 O 1.21576 * 119.99855 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99889 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99820 * 179.97438 * 12 10 9 14 14 H 1.08999 * 115.51641 * 9.41913 * 13 12 10 15 15 C 1.52993 * 117.40442 * 224.06003 * 13 12 10 16 16 H 1.09003 * 119.54473 * 4.09896 * 15 13 12 17 17 C 1.57699 * 116.11194 * 161.62530 * 15 13 12 18 18 N 1.48141 * 104.67474 * 87.30645 * 17 15 13 19 19 C 1.36938 * 127.83862 * 139.77878 * 18 17 15 20 20 H 1.08003 * 119.99555 * 344.35537 * 19 18 17 21 21 C 1.38809 * 119.99983 * 164.35022 * 19 18 17 22 22 N 1.31618 * 120.00350 * 350.57816 * 21 19 18 23 23 Si 1.86804 * 119.99839 * 170.57312 * 21 19 18 24 24 H 1.48500 * 109.46816 * 60.00474 * 23 21 19 25 25 H 1.48496 * 109.47109 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47419 * 300.00391 * 23 21 19 27 27 C 1.48148 * 104.32421 * 319.77441 * 18 17 15 28 28 C 1.53005 * 117.44002 * 154.83528 * 13 12 10 29 29 H 1.08998 * 119.54012 * 355.83489 * 28 13 12 30 30 C 1.39738 * 119.82226 * 0.27218 * 9 8 7 31 31 C 1.37713 * 119.90836 * 359.47035 * 30 9 8 32 32 H 1.08998 * 109.47584 * 60.00064 * 1 2 3 33 33 H 1.08999 * 109.47402 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46965 * 299.99813 * 1 2 3 35 35 H 1.09002 * 109.47664 * 240.00071 * 2 1 3 36 36 H 1.08998 * 109.47584 * 119.99936 * 2 1 3 37 37 H 1.09007 * 109.47073 * 59.99622 * 3 2 1 38 38 H 1.08998 * 109.46693 * 300.00482 * 3 2 1 39 39 H 1.09006 * 109.46965 * 60.00187 * 4 3 2 40 40 H 1.08998 * 109.47584 * 299.99936 * 4 3 2 41 41 H 1.07997 * 119.95351 * 359.97218 * 7 6 5 42 42 H 1.08010 * 120.03878 * 180.02562 * 8 7 6 43 43 H 0.97001 * 120.00614 * 0.02562 * 12 10 9 44 44 H 1.09004 * 110.91901 * 328.22967 * 17 15 13 45 45 H 1.09000 * 109.83623 * 205.84412 * 17 15 13 46 46 H 0.96999 * 120.00314 * 179.97438 * 22 21 19 47 47 H 1.08991 * 110.41139 * 280.80268 * 27 18 17 48 48 H 1.09004 * 110.50394 * 158.41688 * 27 18 17 49 49 H 1.07998 * 120.04655 * 179.70543 * 30 9 8 50 50 H 1.07998 * 119.94970 * 180.25349 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3917 2.9676 0.0000 7 6 5.9209 4.2529 -0.0001 8 6 7.2855 4.4375 0.0004 9 6 8.1385 3.3307 0.0014 10 6 9.6018 3.5241 0.0025 11 8 10.0665 4.6476 0.0020 12 7 10.4227 2.4553 0.0040 13 6 11.8752 2.6473 0.0045 14 1 12.2134 3.6710 0.1645 15 6 12.7016 1.7709 -0.9387 16 1 12.1945 1.0892 -1.6216 17 6 14.1603 2.2782 -1.2577 18 7 14.9984 1.7175 -0.1724 19 6 16.2557 1.1842 -0.2721 20 1 16.6487 0.9050 -1.2386 21 6 17.0250 1.0025 0.8689 22 7 16.6285 1.5083 2.0175 23 14 18.6231 0.0398 0.7743 24 1 19.5466 0.7063 -0.1786 25 1 19.2507 -0.0109 2.1192 26 1 18.3421 -1.3415 0.3074 27 6 14.1677 1.8648 1.0454 28 6 12.7350 1.5218 0.5835 29 1 12.2525 0.6548 1.0347 30 6 7.6024 2.0403 -0.0038 31 6 6.2366 1.8640 0.0012 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8901 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 1.6766 1.9564 0.8900 38 1 1.6766 1.9563 -0.8899 39 1 3.9337 0.9286 -0.8892 40 1 3.9330 0.9289 0.8908 41 1 5.2610 5.1078 -0.0005 42 1 7.6960 5.4365 0.0008 43 1 10.0521 1.5589 0.0040 44 1 14.2045 3.3673 -1.2480 45 1 14.4828 1.8925 -2.2249 46 1 17.1659 1.3810 2.8149 47 1 14.2129 2.8892 1.4148 48 1 14.4950 1.1684 1.8174 49 1 8.2583 1.1823 -0.0078 50 1 5.8217 0.8670 0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115231796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:07 Heat of formation + Delta-G solvation = 1.838575 kcal Electronic energy + Delta-G solvation = -28229.683711 eV Core-core repulsion = 24223.654047 eV Total energy + Delta-G solvation = -4006.029664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.74488 -39.74892 -38.42643 -37.35233 -35.60616 -34.51933 -32.79210 -31.47406 -30.87891 -30.21464 -29.31148 -27.01354 -25.72666 -24.81477 -23.77727 -22.76680 -21.73601 -21.40152 -20.54034 -20.20366 -19.29855 -18.68779 -17.55706 -16.91282 -16.86132 -16.64526 -15.82253 -15.31545 -15.26550 -14.77020 -14.68995 -14.56205 -14.22241 -13.93330 -13.85618 -13.56355 -13.38080 -13.21470 -12.84830 -12.73198 -12.64440 -12.34303 -12.21606 -11.74557 -11.70693 -11.56060 -11.47322 -11.39650 -11.16250 -11.07173 -10.98198 -10.81308 -10.36757 -10.21027 -10.17171 -9.88825 -9.72471 -9.42173 -9.21070 -8.75021 -8.62440 -8.27454 -6.87013 -5.79708 -3.14007 0.66002 0.99459 2.64744 2.75014 3.12174 3.39352 3.43584 3.44876 3.63357 4.22200 4.26305 4.34947 4.36275 4.46534 4.47094 4.48796 4.64538 4.64733 4.72308 4.89744 4.94125 5.05711 5.16636 5.18132 5.18165 5.27318 5.35890 5.37805 5.40422 5.52057 5.56570 5.61001 5.61664 5.70439 5.74367 5.78934 5.86866 5.90040 6.06416 6.16501 6.25060 6.32484 6.52364 6.69536 6.81956 6.89505 6.94961 7.35099 7.52982 7.58408 7.71198 8.20273 8.28119 9.10753 9.73640 10.50835 11.34697 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022062 B = 0.001563 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.850934 B =17907.675044 C =18726.348254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.120 4.120 4 C 0.056 3.944 5 O -0.312 6.312 6 C 0.153 3.847 7 C -0.161 4.161 8 C -0.019 4.019 9 C -0.169 4.169 10 C 0.562 3.438 11 O -0.537 6.537 12 N -0.694 5.694 13 C 0.094 3.906 14 H 0.133 0.867 15 C -0.185 4.185 16 H 0.106 0.894 17 C 0.158 3.842 18 N -0.593 5.593 19 C -0.229 4.229 20 H 0.077 0.923 21 C -0.004 4.004 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.186 3.814 28 C -0.180 4.180 29 H 0.101 0.899 30 C -0.044 4.044 31 C -0.218 4.218 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.138 0.862 42 H 0.145 0.855 43 H 0.396 0.604 44 H 0.031 0.969 45 H 0.050 0.950 46 H 0.255 0.745 47 H 0.027 0.973 48 H 0.090 0.910 49 H 0.129 0.871 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.908 -2.233 -3.780 32.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.019 4.019 5 O -0.226 6.226 6 C 0.107 3.893 7 C -0.179 4.179 8 C -0.038 4.038 9 C -0.172 4.172 10 C 0.350 3.650 11 O -0.415 6.415 12 N -0.343 5.343 13 C -0.011 4.011 14 H 0.151 0.849 15 C -0.207 4.207 16 H 0.124 0.876 17 C 0.031 3.969 18 N -0.316 5.316 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.202 4.202 22 N -0.561 5.561 23 Si 0.743 3.257 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.060 3.940 28 C -0.201 4.201 29 H 0.119 0.881 30 C -0.063 4.063 31 C -0.236 4.236 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.155 0.845 42 H 0.163 0.837 43 H 0.231 0.769 44 H 0.049 0.951 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.045 0.955 48 H 0.108 0.892 49 H 0.147 0.853 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -31.472 -1.360 -3.626 31.709 hybrid contribution 0.607 -1.418 0.010 1.542 sum -30.865 -2.778 -3.616 31.200 Atomic orbital electron populations 1.21748 0.95075 1.01995 1.02141 1.21440 0.96553 0.95456 1.02539 1.21593 0.92286 0.97955 1.03911 1.22931 0.95612 0.81609 1.01767 1.86023 1.18997 1.29655 1.87886 1.19252 0.82258 0.94199 0.93584 1.20418 0.95013 0.94938 1.07574 1.21112 0.91418 0.99319 0.91905 1.19898 0.93250 0.94094 1.09991 1.18089 0.85912 0.84719 0.76251 1.90780 1.77321 1.23505 1.49895 1.45313 1.06040 1.08689 1.74239 1.21911 0.76946 0.98343 1.03945 0.84941 1.25105 0.98375 1.03394 0.93827 0.87583 1.21697 0.86671 0.95649 0.92921 1.45108 1.14157 1.69656 1.02657 1.18947 0.88956 1.33826 0.93960 0.90564 1.24895 0.98379 1.00774 0.96111 1.69889 1.39347 1.47459 0.99376 0.86187 0.82911 0.79858 0.76721 1.20940 1.21534 1.21109 1.21054 0.82574 0.99523 0.90858 1.24641 0.99527 0.98999 0.96960 0.88146 1.21113 0.94677 0.96226 0.94258 1.21158 0.93983 0.98320 1.10178 0.92506 0.92385 0.92504 0.91592 0.91578 0.90694 0.90700 0.91723 0.91692 0.84453 0.83739 0.76879 0.95105 0.93125 0.93464 0.95541 0.89151 0.85279 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.91 37.15 0.37 -0.15 16 2 C -0.12 -0.44 5.93 -26.73 -0.16 -0.60 16 3 C -0.12 -0.55 5.58 -26.73 -0.15 -0.70 16 4 C 0.06 0.32 4.74 37.15 0.18 0.49 16 5 O -0.31 -2.68 10.12 -18.82 -0.19 -2.87 16 6 C 0.15 1.43 6.70 -39.02 -0.26 1.16 16 7 C -0.16 -1.54 9.97 -39.49 -0.39 -1.93 16 8 C -0.02 -0.21 9.58 -39.22 -0.38 -0.58 16 9 C -0.17 -2.01 5.87 -104.96 -0.62 -2.62 16 10 C 0.56 8.43 7.76 -12.44 -0.10 8.34 16 11 O -0.54 -10.06 15.90 5.30 0.08 -9.97 16 12 N -0.69 -9.72 5.51 -54.82 -0.30 -10.02 16 13 C 0.09 1.62 5.92 -67.93 -0.40 1.22 16 14 H 0.13 2.60 7.40 -51.93 -0.38 2.21 16 15 C -0.19 -3.32 7.34 -87.38 -0.64 -3.96 16 16 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 17 C 0.16 3.37 7.10 -0.57 0.00 3.36 16 18 N -0.59 -15.26 3.38 -166.73 -0.56 -15.82 16 19 C -0.23 -6.38 10.35 -15.06 -0.16 -6.54 16 20 H 0.08 2.04 7.85 -52.48 -0.41 1.63 16 21 C 0.00 -0.12 5.40 -17.43 -0.09 -0.22 16 22 N -0.91 -26.80 10.88 55.49 0.60 -26.20 16 23 Si 0.91 21.87 29.56 -169.99 -5.03 16.85 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 C 0.19 4.49 5.69 -2.41 -0.01 4.48 16 28 C -0.18 -3.40 6.98 -89.22 -0.62 -4.03 16 29 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 30 C -0.04 -0.41 9.53 -39.21 -0.37 -0.78 16 31 C -0.22 -1.83 9.01 -39.49 -0.36 -2.19 16 32 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 40 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 41 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.14 1.57 7.64 -52.48 -0.40 1.17 16 43 H 0.40 4.33 6.85 -40.82 -0.28 4.05 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 2.42 6.53 -51.93 -0.34 2.08 16 49 H 0.13 0.93 6.39 -52.49 -0.34 0.59 16 50 H 0.13 0.80 6.28 -52.49 -0.33 0.47 16 LS Contribution 408.38 15.07 6.15 6.15 Total: -1.00 -32.92 408.38 -11.32 -44.24 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.91 Total: 2.89 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -4.17 Total: -5.24 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.26 Total: -52.04 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.11 Total: -12.85 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.92 -11.32 -44.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115231796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.077 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds