Wall clock time and date at job start Wed Apr 1 2020 03:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.47005 * 2 1 4 4 C 1.52994 * 109.46773 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47605 * 55.00050 * 4 3 2 6 6 N 1.46501 * 109.47370 * 295.00014 * 4 3 2 7 7 C 1.34778 * 120.00189 * 84.99779 * 6 4 3 8 8 O 1.21345 * 119.99684 * 0.02562 * 7 6 4 9 9 C 1.49449 * 120.00001 * 180.02562 * 7 6 4 10 10 O 1.21347 * 120.00228 * 5.09493 * 9 7 6 11 11 N 1.34774 * 120.00048 * 185.09256 * 9 7 6 12 12 C 1.46502 * 120.00331 * 185.04195 * 11 9 7 13 13 C 1.52996 * 109.47063 * 184.77839 * 12 11 9 14 14 C 1.50698 * 115.55121 * 294.81386 * 13 12 11 15 15 H 1.08003 * 119.99766 * 95.20398 * 14 13 12 16 16 C 1.37874 * 119.99926 * 274.92660 * 14 13 12 17 17 N 1.31507 * 120.00401 * 355.41780 * 16 14 13 18 18 Si 1.86807 * 119.99884 * 175.41717 * 16 14 13 19 19 H 1.48500 * 109.47157 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47138 * 120.00273 * 18 16 14 21 21 H 1.48505 * 109.47155 * 240.00161 * 18 16 14 22 22 C 1.53002 * 117.49906 * 80.48488 * 13 12 11 23 23 C 1.53002 * 117.49925 * 149.14404 * 13 12 11 24 24 C 1.50698 * 109.47201 * 175.00130 * 4 3 2 25 25 C 1.38236 * 120.00379 * 79.72150 * 24 4 3 26 26 C 1.38229 * 120.00584 * 179.78764 * 25 24 4 27 27 C 1.38240 * 119.99681 * 0.44950 * 26 25 24 28 28 C 1.38236 * 120.00055 * 359.80598 * 27 26 25 29 29 C 1.38234 * 120.00024 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47086 * 299.99844 * 1 2 3 31 31 H 1.08997 * 109.47200 * 59.99872 * 1 2 3 32 32 H 1.09003 * 109.46795 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46606 * 239.99680 * 2 1 3 34 34 H 1.09002 * 109.46507 * 120.00212 * 2 1 3 35 35 H 1.09001 * 109.47071 * 60.00147 * 3 2 1 36 36 H 1.08997 * 109.47246 * 300.00100 * 3 2 1 37 37 H 0.97003 * 120.00317 * 265.00578 * 6 4 3 38 38 H 0.97000 * 119.99834 * 5.03638 * 11 9 7 39 39 H 1.08991 * 109.46950 * 64.77719 * 12 11 9 40 40 H 1.09002 * 109.46795 * 304.77265 * 12 11 9 41 41 H 0.97005 * 120.00851 * 184.99676 * 17 16 14 42 42 H 1.09007 * 117.49900 * 214.99948 * 22 13 12 43 43 H 1.08994 * 117.50021 * 0.02562 * 22 13 12 44 44 H 1.09005 * 117.49794 * 359.97438 * 23 13 12 45 45 H 1.09000 * 117.49885 * 144.96827 * 23 13 12 46 46 H 1.08002 * 119.99722 * 0.02562 * 25 24 4 47 47 H 1.07998 * 120.00487 * 180.27513 * 26 25 24 48 48 H 1.08004 * 120.00258 * 179.83079 * 27 26 25 49 49 H 1.07997 * 119.99827 * 180.02562 * 28 27 26 50 50 H 1.07995 * 120.00209 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9331 0.8531 -0.8427 6 7 4.0589 0.8585 1.2509 7 6 4.1876 -0.4782 1.3658 8 8 3.8990 -1.1979 0.4325 9 6 4.6858 -1.0738 2.6427 10 8 4.8865 -0.3636 3.6059 11 7 4.9122 -2.3999 2.7245 12 6 5.2941 -3.0003 4.0051 13 6 5.6054 -4.4842 3.8000 14 6 4.4393 -5.3407 3.3785 15 1 4.2734 -5.5500 2.3320 16 6 3.5877 -5.8620 4.3293 17 7 3.8432 -5.6875 5.6074 18 14 2.0707 -6.8161 3.8018 19 1 2.0113 -6.8711 2.3190 20 1 2.1402 -8.1963 4.3455 21 1 0.8550 -6.1399 4.3216 22 6 6.9848 -4.8466 3.2462 23 6 6.6538 -5.1192 4.7156 24 6 4.0724 2.8578 -0.1244 25 6 4.1019 3.6805 0.9861 26 6 4.5668 4.9774 0.8735 27 6 4.9935 5.4547 -0.3517 28 6 4.9590 4.6338 -1.4634 29 6 4.4984 3.3354 -1.3498 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 4.2899 1.4339 1.9969 38 1 4.8223 -2.9568 1.9354 39 1 4.4731 -2.8959 4.7144 40 1 6.1774 -2.4942 4.3946 41 1 3.2854 -6.1147 6.2764 42 1 7.0489 -5.7047 2.5770 43 1 7.6707 -4.0280 3.0283 44 1 7.1222 -4.4796 5.4639 45 1 6.4999 -6.1563 5.0136 46 1 3.7653 3.3086 1.9426 47 1 4.5940 5.6186 1.7421 48 1 5.3542 6.4688 -0.4403 49 1 5.2928 5.0066 -2.4204 50 1 4.4711 2.6942 -2.2184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116974577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:38 Heat of formation + Delta-G solvation = -34.610177 kcal Electronic energy + Delta-G solvation = -29981.897906 eV Core-core repulsion = 25974.287705 eV Total energy + Delta-G solvation = -4007.610200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.71625 -39.53891 -38.28267 -36.72553 -36.19440 -33.86804 -33.27130 -31.97871 -31.66126 -31.14727 -28.48445 -27.03187 -25.50278 -24.66229 -23.33781 -22.79531 -21.45336 -21.18343 -20.59960 -19.90586 -19.52503 -18.20711 -17.08065 -16.73601 -16.19902 -15.92689 -15.51046 -15.43037 -14.92600 -14.80450 -14.61809 -14.55981 -14.12318 -13.81481 -13.68733 -13.55308 -13.27336 -13.11786 -12.99767 -12.70726 -12.51574 -11.90931 -11.87497 -11.79947 -11.63094 -11.48422 -11.29249 -11.20850 -11.00185 -10.96276 -10.77378 -10.58423 -10.51750 -10.25549 -9.62526 -9.35363 -9.23900 -9.17144 -9.08520 -8.97703 -8.54186 -8.39601 -8.18839 -6.09528 -4.19133 0.98954 1.09201 1.78235 2.67521 3.25295 3.34628 3.38478 3.46585 3.60186 4.03988 4.23724 4.35413 4.56163 4.68299 4.81213 4.86343 4.90951 4.94852 5.10157 5.16599 5.18210 5.23185 5.33466 5.35318 5.52694 5.59060 5.64158 5.70827 5.81426 5.82823 5.95440 6.10414 6.13301 6.15518 6.20450 6.22545 6.28025 6.38852 6.39524 6.45442 6.47191 6.66255 6.66728 6.74456 6.99018 7.07973 7.22007 7.32461 7.49471 7.80588 7.85107 8.14582 8.31015 8.51642 8.83435 9.48704 10.97543 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.002663 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.049071 B =10511.599386 C =11739.795571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.123 4.123 4 C 0.184 3.816 5 H 0.101 0.899 6 N -0.701 5.701 7 C 0.510 3.490 8 O -0.512 6.512 9 C 0.494 3.506 10 O -0.541 6.541 11 N -0.666 5.666 12 C 0.159 3.841 13 C 0.021 3.979 14 C -0.499 4.499 15 H 0.062 0.938 16 C 0.073 3.927 17 N -0.876 5.876 18 Si 0.890 3.110 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.210 4.210 23 C -0.139 4.139 24 C -0.090 4.090 25 C -0.112 4.112 26 C -0.115 4.115 27 C -0.121 4.121 28 C -0.118 4.118 29 C -0.107 4.107 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.410 0.590 38 H 0.414 0.586 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.261 0.739 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.124 0.876 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 19.853 -11.981 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.162 4.162 4 C 0.080 3.920 5 H 0.118 0.882 6 N -0.356 5.356 7 C 0.291 3.709 8 O -0.386 6.386 9 C 0.274 3.726 10 O -0.421 6.421 11 N -0.315 5.315 12 C 0.037 3.963 13 C 0.020 3.980 14 C -0.537 4.537 15 H 0.081 0.919 16 C -0.131 4.131 17 N -0.512 5.512 18 Si 0.717 3.283 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.247 4.247 23 C -0.178 4.178 24 C -0.091 4.091 25 C -0.130 4.130 26 C -0.133 4.133 27 C -0.139 4.139 28 C -0.136 4.136 29 C -0.125 4.125 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.247 0.753 38 H 0.250 0.750 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.142 0.858 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.141 0.859 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.615 19.785 -11.760 23.025 hybrid contribution -0.788 -0.508 -0.058 0.939 sum -1.403 19.277 -11.818 22.655 Atomic orbital electron populations 1.21784 0.96244 1.01719 1.01136 1.21624 0.95174 0.95565 1.03583 1.22057 0.93183 0.98294 1.02661 1.19959 0.94212 0.89979 0.87825 0.88156 1.45891 1.66287 1.06747 1.16725 1.20432 0.78685 0.82957 0.88823 1.90763 1.47880 1.60249 1.39716 1.19948 0.80543 0.84092 0.88063 1.90710 1.52332 1.60613 1.38399 1.45887 1.64463 1.06279 1.14895 1.21208 0.99046 0.93282 0.82773 1.19034 0.88446 0.90321 1.00178 1.20422 1.08777 1.31316 0.93185 0.91944 1.24986 0.97491 0.95687 0.94915 1.69993 1.38952 1.42506 0.99720 0.86572 0.83189 0.79478 0.79040 1.19546 1.21022 1.20917 1.23034 1.01412 1.02181 0.98087 1.22476 1.03253 1.01551 0.90481 1.19913 0.99786 0.95151 0.94249 1.21008 0.99652 0.94003 0.98327 1.21158 0.98714 0.95681 0.97790 1.21199 0.99847 0.99845 0.92971 1.21144 0.99713 0.93939 0.98804 1.21015 0.98492 0.96088 0.96918 0.93112 0.93142 0.92617 0.91185 0.91505 0.91492 0.90850 0.75263 0.74996 0.90815 0.93433 0.92905 0.90216 0.91658 0.91750 0.89387 0.85849 0.85813 0.86056 0.85888 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.50 4.54 -26.73 -0.12 -1.63 16 3 C -0.12 -1.26 4.87 -26.73 -0.13 -1.39 16 4 C 0.18 1.96 2.46 -69.09 -0.17 1.79 16 5 H 0.10 1.14 7.44 -51.93 -0.39 0.75 16 6 N -0.70 -8.85 4.97 -55.37 -0.28 -9.12 16 7 C 0.51 8.08 6.45 -11.59 -0.07 8.01 16 8 O -0.51 -8.77 13.64 5.50 0.08 -8.69 16 9 C 0.49 9.17 7.88 -11.59 -0.09 9.08 16 10 O -0.54 -10.91 16.47 5.50 0.09 -10.82 16 11 N -0.67 -13.19 5.46 -60.73 -0.33 -13.52 16 12 C 0.16 3.52 5.53 -4.04 -0.02 3.50 16 13 C 0.02 0.49 1.47 -155.66 -0.23 0.26 16 14 C -0.50 -12.89 8.59 -34.44 -0.30 -13.18 16 15 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 16 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 17 N -0.88 -24.01 12.65 55.43 0.70 -23.31 16 18 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.21 -4.36 9.96 -26.69 -0.27 -4.63 16 23 C -0.14 -3.15 9.14 -26.69 -0.24 -3.39 16 24 C -0.09 -0.85 4.95 -104.62 -0.52 -1.37 16 25 C -0.11 -1.00 9.05 -39.59 -0.36 -1.36 16 26 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 27 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 28 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 29 C -0.11 -0.90 9.67 -39.58 -0.38 -1.29 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 34 H 0.07 1.00 5.65 -51.93 -0.29 0.71 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.41 4.88 6.37 -40.82 -0.26 4.62 16 38 H 0.41 8.10 7.84 -40.82 -0.32 7.78 16 39 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 40 H 0.05 1.02 8.05 -51.93 -0.42 0.60 16 41 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 42 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 46 H 0.12 1.03 6.93 -52.49 -0.36 0.67 16 47 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 48 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 49 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 50 H 0.13 0.88 8.04 -52.49 -0.42 0.46 16 LS Contribution 413.98 15.07 6.24 6.24 Total: -1.00 -28.90 413.98 -10.26 -39.16 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -7.91 Total: 13.32 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -3.83 Total: -8.95 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.09 Total: -45.95 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.17 Total: -19.51 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -28.90 -10.26 -39.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116974577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.551 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds