Wall clock time and date at job start Wed Apr 1 2020 03:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47004 * 2 1 4 4 C 1.53003 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46895 * 305.00251 * 4 3 2 6 6 N 1.46492 * 109.46996 * 65.00011 * 4 3 2 7 7 C 1.34778 * 120.00351 * 274.99784 * 6 4 3 8 8 O 1.21349 * 119.99787 * 0.02562 * 7 6 4 9 9 C 1.49449 * 120.00001 * 180.02562 * 7 6 4 10 10 O 1.21347 * 120.00228 * 5.09493 * 9 7 6 11 11 N 1.34773 * 119.99639 * 185.09134 * 9 7 6 12 12 C 1.46511 * 119.99783 * 185.04025 * 11 9 7 13 13 C 1.52996 * 109.46925 * 184.78027 * 12 11 9 14 14 C 1.50698 * 115.55121 * 294.81537 * 13 12 11 15 15 H 1.07998 * 120.00066 * 95.19961 * 14 13 12 16 16 C 1.37881 * 119.99896 * 274.93004 * 14 13 12 17 17 N 1.31507 * 120.00408 * 355.41436 * 16 14 13 18 18 Si 1.86807 * 119.99877 * 175.41718 * 16 14 13 19 19 H 1.48500 * 109.47157 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46976 * 119.99565 * 18 16 14 21 21 H 1.48495 * 109.47153 * 239.99884 * 18 16 14 22 22 C 1.53001 * 117.50274 * 80.48703 * 13 12 11 23 23 C 1.53002 * 117.49925 * 149.14554 * 13 12 11 24 24 C 1.50702 * 109.46938 * 185.00230 * 4 3 2 25 25 C 1.38232 * 120.00076 * 279.72495 * 24 4 3 26 26 C 1.38235 * 119.99894 * 179.81325 * 25 24 4 27 27 C 1.38230 * 119.99837 * 0.39606 * 26 25 24 28 28 C 1.38236 * 120.00492 * 359.85940 * 27 26 25 29 29 C 1.38233 * 119.99572 * 100.00140 * 24 4 3 30 30 H 1.09008 * 109.46794 * 59.99429 * 1 2 3 31 31 H 1.08997 * 109.47149 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47199 * 299.99873 * 1 2 3 33 33 H 1.09005 * 109.47113 * 240.00410 * 2 1 3 34 34 H 1.08994 * 109.46866 * 120.00427 * 2 1 3 35 35 H 1.09005 * 109.46851 * 60.00249 * 3 2 1 36 36 H 1.08996 * 109.47218 * 300.00234 * 3 2 1 37 37 H 0.97003 * 120.00155 * 95.00486 * 6 4 3 38 38 H 0.96993 * 120.00562 * 5.04008 * 11 9 7 39 39 H 1.08991 * 109.46896 * 64.78025 * 12 11 9 40 40 H 1.09002 * 109.46987 * 304.77486 * 12 11 9 41 41 H 0.96998 * 120.00822 * 185.00545 * 17 16 14 42 42 H 1.08995 * 117.49983 * 215.00436 * 22 13 12 43 43 H 1.09003 * 117.49466 * 0.02562 * 22 13 12 44 44 H 1.09005 * 117.49794 * 359.97438 * 23 13 12 45 45 H 1.09000 * 117.49885 * 144.96827 * 23 13 12 46 46 H 1.07998 * 119.99560 * 0.02562 * 25 24 4 47 47 H 1.08000 * 120.00059 * 180.22943 * 26 25 24 48 48 H 1.08006 * 119.99912 * 179.83344 * 27 26 25 49 49 H 1.08001 * 120.00465 * 179.97438 * 28 27 26 50 50 H 1.07997 * 120.00670 * 359.97438 * 29 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 7 4.0588 0.8586 -1.2508 7 6 4.1877 -0.4780 -1.3658 8 8 3.8983 -1.1979 -0.4327 9 6 4.6869 -1.0736 -2.6423 10 8 5.0635 -0.3518 -3.5421 11 7 4.7188 -2.4124 -2.7941 12 6 5.3098 -2.9990 -3.9995 13 6 5.1129 -4.5161 -3.9775 14 6 5.8345 -5.2493 -2.8763 15 1 5.3207 -5.4813 -1.9551 16 6 7.1490 -5.6289 -3.0470 17 7 7.7456 -5.4321 -4.2023 18 14 8.0825 -6.4229 -1.6371 19 1 7.1927 -6.5312 -0.4531 20 1 8.5338 -7.7781 -2.0433 21 1 9.2631 -5.5901 -1.2939 22 6 3.7494 -5.0580 -4.4115 23 6 4.9669 -5.2291 -5.3233 24 6 4.0723 2.8580 0.1245 25 6 4.1125 3.6770 -0.9883 26 6 4.5695 4.9766 -0.8738 27 6 4.9941 5.4545 0.3518 28 6 4.9589 4.6338 1.4636 29 6 4.4981 3.3354 1.3499 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9564 -0.8899 37 1 4.2899 1.4340 -1.9968 38 1 4.3505 -2.9875 -2.1054 39 1 6.3752 -2.7713 -4.0295 40 1 4.8242 -2.5824 -4.8820 41 1 8.6456 -5.7640 -4.3463 42 1 3.3744 -5.9446 -3.9005 43 1 2.9928 -4.3336 -4.7131 44 1 5.0108 -4.6173 -6.2244 45 1 5.3933 -6.2283 -5.4124 46 1 3.7835 3.3026 -1.9464 47 1 4.5975 5.6177 -1.7425 48 1 5.3537 6.4690 0.4407 49 1 5.2910 5.0071 2.4211 50 1 4.4706 2.6943 2.2186 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116974596.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:43 Heat of formation + Delta-G solvation = -34.468426 kcal Electronic energy + Delta-G solvation = -29953.984057 eV Core-core repulsion = 25946.380004 eV Total energy + Delta-G solvation = -4007.604054 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.71776 -39.53216 -38.28272 -36.72623 -36.20229 -33.89904 -33.27602 -31.97699 -31.65828 -31.13571 -28.50627 -27.03655 -25.50347 -24.67276 -23.33914 -22.79095 -21.48263 -21.18541 -20.60619 -19.90520 -19.52617 -18.20877 -17.08283 -16.73624 -16.13181 -15.97515 -15.56649 -15.41525 -14.93558 -14.80656 -14.65992 -14.50892 -14.08845 -13.91213 -13.66193 -13.45701 -13.39578 -13.09378 -13.01446 -12.70145 -12.53506 -11.93527 -11.88057 -11.81583 -11.62859 -11.50739 -11.29547 -11.21359 -10.99874 -10.96169 -10.80293 -10.63637 -10.51484 -10.25619 -9.62636 -9.35161 -9.22922 -9.16847 -9.08291 -8.97381 -8.54056 -8.39619 -8.18786 -6.09333 -4.18961 1.00187 1.10442 1.78159 2.67503 3.25667 3.35022 3.38836 3.48247 3.59326 4.04171 4.23373 4.35704 4.57006 4.68980 4.81998 4.85404 4.89974 4.92057 5.06505 5.16684 5.18421 5.22780 5.32650 5.34230 5.49130 5.55380 5.64245 5.70490 5.78211 5.79348 5.95384 6.04776 6.11464 6.16331 6.17655 6.22149 6.27927 6.35880 6.39380 6.42394 6.47050 6.66153 6.67862 6.74444 6.98983 7.07957 7.21954 7.32566 7.49451 7.80774 7.85055 8.14571 8.31100 8.51642 8.83602 9.48902 10.97730 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.002610 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.069692 B =10727.344878 C =11315.542505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.123 4.123 4 C 0.184 3.816 5 H 0.101 0.899 6 N -0.701 5.701 7 C 0.510 3.490 8 O -0.511 6.511 9 C 0.494 3.506 10 O -0.541 6.541 11 N -0.666 5.666 12 C 0.159 3.841 13 C 0.021 3.979 14 C -0.500 4.500 15 H 0.062 0.938 16 C 0.073 3.927 17 N -0.875 5.875 18 Si 0.890 3.110 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.210 4.210 23 C -0.140 4.140 24 C -0.091 4.091 25 C -0.111 4.111 26 C -0.115 4.115 27 C -0.120 4.120 28 C -0.118 4.118 29 C -0.106 4.106 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.410 0.590 38 H 0.414 0.586 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.261 0.739 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.876 19.239 8.589 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.161 4.161 4 C 0.080 3.920 5 H 0.119 0.881 6 N -0.357 5.357 7 C 0.291 3.709 8 O -0.386 6.386 9 C 0.274 3.726 10 O -0.420 6.420 11 N -0.315 5.315 12 C 0.037 3.963 13 C 0.020 3.980 14 C -0.537 4.537 15 H 0.081 0.919 16 C -0.131 4.131 17 N -0.512 5.512 18 Si 0.718 3.282 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.247 4.247 23 C -0.178 4.178 24 C -0.091 4.091 25 C -0.130 4.130 26 C -0.134 4.134 27 C -0.138 4.138 28 C -0.136 4.136 29 C -0.125 4.125 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.247 0.753 38 H 0.250 0.750 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.140 0.860 49 H 0.141 0.859 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.588 19.203 8.540 23.100 hybrid contribution 0.676 -0.411 0.584 0.983 sum -8.912 18.792 9.124 22.711 Atomic orbital electron populations 1.21785 0.96259 1.01636 1.01183 1.21623 0.95094 0.95654 1.03548 1.22052 0.93214 0.98221 1.02663 1.19960 0.94144 0.90028 0.87888 0.88148 1.45889 1.66244 1.06767 1.16752 1.20436 0.78430 0.82978 0.89052 1.90763 1.47559 1.60306 1.39975 1.19948 0.81120 0.84193 0.87388 1.90711 1.48963 1.60527 1.41843 1.45886 1.56998 1.04947 1.23689 1.21211 0.97814 0.93782 0.83511 1.19032 0.93766 0.89168 0.96001 1.20425 0.95660 1.37480 1.00184 0.91943 1.24989 0.97316 0.95165 0.95611 1.69991 1.14001 1.44612 1.22552 0.86566 0.80057 0.78853 0.82767 1.19549 1.21015 1.20932 1.23030 0.91808 1.02799 1.07052 1.22476 0.99865 1.02104 0.93327 1.19905 0.99836 0.95154 0.94236 1.20990 0.99747 0.94002 0.98230 1.21153 0.98775 0.95643 0.97781 1.21198 0.99796 0.99873 0.92978 1.21150 0.99674 0.93941 0.98820 1.21019 0.98423 0.96087 0.96963 0.93144 0.92666 0.93100 0.91605 0.91138 0.90822 0.91517 0.75260 0.75000 0.90824 0.93425 0.92903 0.90219 0.91664 0.91750 0.89389 0.85894 0.85814 0.86046 0.85875 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.38 4.54 -26.73 -0.12 -1.51 16 3 C -0.12 -1.19 4.87 -26.73 -0.13 -1.32 16 4 C 0.18 1.96 2.46 -69.08 -0.17 1.79 16 5 H 0.10 1.17 7.44 -51.93 -0.39 0.78 16 6 N -0.70 -8.86 4.97 -55.37 -0.28 -9.13 16 7 C 0.51 8.09 6.46 -11.59 -0.07 8.02 16 8 O -0.51 -8.77 13.64 5.50 0.07 -8.70 16 9 C 0.49 9.17 7.88 -11.59 -0.09 9.08 16 10 O -0.54 -10.93 16.47 5.50 0.09 -10.84 16 11 N -0.67 -13.18 5.46 -60.73 -0.33 -13.52 16 12 C 0.16 3.52 5.53 -4.04 -0.02 3.50 16 13 C 0.02 0.49 1.47 -155.66 -0.23 0.26 16 14 C -0.50 -12.92 8.59 -34.44 -0.30 -13.22 16 15 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 16 C 0.07 1.94 5.43 -17.82 -0.10 1.85 16 17 N -0.88 -24.04 12.65 55.43 0.70 -23.34 16 18 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.21 -4.34 9.96 -26.69 -0.27 -4.61 16 23 C -0.14 -3.15 9.14 -26.69 -0.24 -3.39 16 24 C -0.09 -0.87 4.96 -104.62 -0.52 -1.39 16 25 C -0.11 -1.01 9.06 -39.58 -0.36 -1.37 16 26 C -0.12 -0.95 10.05 -39.59 -0.40 -1.34 16 27 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 28 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 29 C -0.11 -0.94 9.67 -39.58 -0.38 -1.32 16 30 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.89 5.65 -51.93 -0.29 0.60 16 34 H 0.07 0.87 7.84 -51.93 -0.41 0.46 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.41 4.88 6.34 -40.82 -0.26 4.62 16 38 H 0.41 8.09 7.83 -40.82 -0.32 7.77 16 39 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 40 H 0.05 1.02 8.05 -51.93 -0.42 0.60 16 41 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 42 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 45 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 46 H 0.12 1.01 6.90 -52.49 -0.36 0.65 16 47 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 48 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 49 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 50 H 0.13 0.93 8.04 -52.49 -0.42 0.51 16 LS Contribution 413.93 15.07 6.24 6.24 Total: -1.00 -29.01 413.93 -10.26 -39.27 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -7.91 Total: 12.99 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -3.83 Total: -8.73 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.09 Total: -45.99 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.17 Total: -19.53 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -29.01 -10.26 -39.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116974596.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.800 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds