Wall clock time and date at job start Wed Apr 1 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47034 * 2 1 4 4 H 1.08995 * 110.32599 * 333.79762 * 3 2 1 5 5 C 1.54906 * 110.36850 * 211.56027 * 3 2 1 6 6 C 1.55150 * 101.58305 * 204.15594 * 5 3 2 7 7 C 1.54327 * 102.94227 * 35.49787 * 6 5 3 8 8 H 1.09000 * 109.88426 * 218.23921 * 7 6 5 9 9 C 1.53007 * 109.87703 * 97.22768 * 7 6 5 10 10 N 1.47017 * 107.27179 * 337.81087 * 7 6 5 11 11 C 1.34773 * 125.64612 * 178.98307 * 10 7 6 12 12 O 1.21358 * 120.00020 * 179.88682 * 11 10 7 13 13 C 1.49446 * 120.00216 * 359.88828 * 11 10 7 14 14 O 1.21347 * 120.00322 * 6.33882 * 13 11 10 15 15 N 1.34782 * 120.00052 * 186.34355 * 13 11 10 16 16 C 1.46502 * 120.00016 * 180.02562 * 15 13 11 17 17 C 1.50703 * 109.46886 * 179.97438 * 16 15 13 18 18 C 1.38629 * 119.74955 * 269.72377 * 17 16 15 19 19 C 1.37615 * 120.24823 * 179.72336 * 18 17 16 20 20 C 1.40726 * 119.74306 * 0.57454 * 19 18 17 21 21 C 1.41396 * 120.24172 * 179.68153 * 20 19 18 22 22 H 1.08000 * 119.99483 * 208.01984 * 21 20 19 23 23 C 1.39939 * 120.00355 * 28.02433 * 21 20 19 24 24 N 1.30825 * 119.99785 * 12.07024 * 23 21 20 25 25 Si 1.86798 * 120.00147 * 192.06557 * 23 21 20 26 26 H 1.48502 * 109.47055 * 90.00344 * 25 23 21 27 27 H 1.48502 * 109.47207 * 209.99881 * 25 23 21 28 28 H 1.48500 * 109.47247 * 330.00303 * 25 23 21 29 29 C 1.40718 * 119.50829 * 359.70072 * 20 19 18 30 30 C 1.37613 * 119.74663 * 0.02562 * 29 20 19 31 31 H 1.09004 * 109.46942 * 185.58925 * 1 2 3 32 32 H 1.09000 * 109.47419 * 65.58620 * 1 2 3 33 33 H 1.09006 * 109.47071 * 305.58209 * 1 2 3 34 34 H 1.08996 * 109.47477 * 120.00509 * 2 1 3 35 35 H 1.08998 * 109.46752 * 240.00855 * 2 1 3 36 36 H 1.09001 * 111.00539 * 322.22841 * 5 3 2 37 37 H 1.09006 * 111.00414 * 86.07666 * 5 3 2 38 38 H 1.09000 * 110.72644 * 153.86787 * 6 5 3 39 39 H 1.09010 * 110.71938 * 276.96163 * 6 5 3 40 40 H 1.08997 * 109.46633 * 80.12766 * 9 7 6 41 41 H 1.08998 * 109.46424 * 200.12040 * 9 7 6 42 42 H 1.08989 * 109.47062 * 320.12288 * 9 7 6 43 43 H 0.96999 * 120.00035 * 359.97438 * 15 13 11 44 44 H 1.08995 * 109.46739 * 299.99533 * 16 15 13 45 45 H 1.08999 * 109.47152 * 59.99267 * 16 15 13 46 46 H 1.08002 * 119.87775 * 359.97438 * 18 17 16 47 47 H 1.07999 * 120.13469 * 180.27603 * 19 18 17 48 48 H 0.97006 * 119.99783 * 179.97438 * 24 23 21 49 49 H 1.08001 * 120.12373 * 179.97438 * 29 20 19 50 50 H 1.07997 * 119.87674 * 180.02562 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3016 2.1052 -0.4513 5 6 3.3863 1.5385 -0.7601 6 6 4.0096 2.8121 -0.1303 7 6 3.5443 2.7342 1.3391 8 1 3.2981 3.7316 1.7033 9 6 4.6495 2.1231 2.2030 10 7 2.3506 1.8769 1.3741 11 6 1.6548 1.5440 2.4794 12 8 0.6793 0.8277 2.3895 13 6 2.0846 2.0568 3.8157 14 8 2.9879 2.8634 3.8942 15 7 1.4691 1.6235 4.9336 16 6 1.8900 2.1267 6.2436 17 6 1.0489 1.4904 7.3200 18 6 -0.1272 2.1020 7.7256 19 6 -0.9060 1.5270 8.7037 20 6 -0.4982 0.3199 9.3011 21 6 -1.2869 -0.2766 10.3118 22 1 -0.8218 -0.8954 11.0649 23 6 -2.6700 -0.0652 10.3362 24 7 -3.2668 0.4792 9.3071 25 14 -3.6643 -0.5607 11.8380 26 1 -3.7241 0.5778 12.7896 27 1 -5.0409 -0.9296 11.4206 28 1 -3.0184 -1.7239 12.4976 29 6 0.7004 -0.2889 8.8854 30 6 1.4605 0.3011 7.9016 31 1 -0.3633 -1.0228 0.1001 32 1 -0.3634 0.4247 -0.9358 33 1 -0.3633 0.5980 0.8358 34 1 1.8933 -0.5139 0.8899 35 1 1.8932 -0.5137 -0.8901 36 1 4.0071 0.6635 -0.5672 37 1 3.2226 1.6713 -1.8295 38 1 5.0973 2.7805 -0.1927 39 1 3.6230 3.7098 -0.6130 40 1 5.3931 2.8857 2.4345 41 1 4.2182 1.7431 3.1291 42 1 5.1241 1.3054 1.6608 43 1 0.7469 0.9790 4.8709 44 1 2.9388 1.8794 6.4078 45 1 1.7625 3.2087 6.2752 46 1 -0.4355 3.0311 7.2694 47 1 -1.8242 2.0028 9.0151 48 1 -4.2256 0.6254 9.3238 49 1 1.0230 -1.2152 9.3375 50 1 2.3806 -0.1646 7.5807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118164977.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:22 Heat of formation + Delta-G solvation = -61.365622 kcal Electronic energy + Delta-G solvation = -30099.386435 eV Core-core repulsion = 26090.616031 eV Total energy + Delta-G solvation = -4008.770404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.12534 -40.27089 -39.39164 -38.77025 -36.43767 -35.16172 -34.77198 -32.70201 -32.14244 -31.21144 -30.94446 -28.93486 -26.91089 -26.44220 -25.00576 -23.44195 -22.93481 -22.62647 -21.85375 -21.67604 -20.51152 -19.25062 -18.62239 -18.12161 -17.27156 -17.02119 -16.95566 -16.56454 -16.02038 -15.75384 -15.64522 -15.57045 -14.94726 -14.93769 -14.72187 -14.49698 -14.23281 -14.16357 -13.85540 -13.77608 -13.58114 -13.47876 -13.29113 -13.04851 -12.86457 -12.83605 -12.75268 -12.48408 -12.43118 -12.21621 -12.11463 -11.69596 -11.52985 -11.50399 -11.48640 -11.43092 -11.29423 -11.11593 -10.45677 -10.11828 -9.79652 -9.41870 -9.27050 -8.63916 -6.40914 0.39392 0.75861 1.10958 1.33406 1.37984 1.50644 1.54590 2.16179 2.19345 2.49717 2.78065 3.34677 3.56304 3.69993 3.71793 3.88062 4.10126 4.11108 4.20748 4.27236 4.27828 4.46495 4.47738 4.50400 4.58055 4.62536 4.70145 4.74969 4.83589 4.91871 5.00532 5.02137 5.08024 5.11108 5.13357 5.16731 5.17761 5.22961 5.31190 5.32541 5.40524 5.41967 5.49212 5.62065 5.66812 5.85838 6.07143 6.11804 6.15891 6.32595 6.34407 6.66141 6.72440 6.90506 6.97916 7.01105 8.31896 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019277 B = 0.002211 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.175608 B =12658.152346 C =13554.975014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C 0.125 3.875 4 H 0.085 0.915 5 C -0.119 4.119 6 C -0.121 4.121 7 C 0.127 3.873 8 H 0.073 0.927 9 C -0.156 4.156 10 N -0.582 5.582 11 C 0.514 3.486 12 O -0.533 6.533 13 C 0.495 3.505 14 O -0.526 6.526 15 N -0.688 5.688 16 C 0.193 3.807 17 C -0.227 4.227 18 C -0.084 4.084 19 C -0.187 4.187 20 C 0.085 3.915 21 C -0.496 4.496 22 H 0.077 0.923 23 C 0.031 3.969 24 N -0.828 5.828 25 Si 0.985 3.015 26 H -0.262 1.262 27 H -0.269 1.269 28 H -0.258 1.258 29 C -0.240 4.240 30 C -0.069 4.069 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.410 0.590 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.105 0.895 47 H 0.102 0.898 48 H 0.288 0.712 49 H 0.100 0.900 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.990 3.577 -20.242 23.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C 0.024 3.976 4 H 0.103 0.897 5 C -0.157 4.157 6 C -0.159 4.159 7 C 0.025 3.975 8 H 0.091 0.909 9 C -0.214 4.214 10 N -0.316 5.316 11 C 0.297 3.703 12 O -0.411 6.411 13 C 0.276 3.724 14 O -0.404 6.404 15 N -0.339 5.339 16 C 0.072 3.928 17 C -0.229 4.229 18 C -0.103 4.103 19 C -0.206 4.206 20 C 0.083 3.917 21 C -0.525 4.525 22 H 0.095 0.905 23 C -0.183 4.183 24 N -0.454 5.454 25 Si 0.806 3.194 26 H -0.186 1.186 27 H -0.194 1.194 28 H -0.182 1.182 29 C -0.259 4.259 30 C -0.088 4.088 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.246 0.754 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.098 0.902 49 H 0.118 0.882 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.859 3.833 -20.249 23.777 hybrid contribution -1.269 -0.559 1.132 1.790 sum 10.590 3.274 -19.117 22.098 Atomic orbital electron populations 1.21970 0.95810 1.01623 1.01875 1.21664 0.96565 0.95175 1.02033 1.22455 0.98981 0.96101 0.80081 0.89729 1.22899 0.93403 0.98594 1.00771 1.22776 1.02681 0.99047 0.91413 1.21885 0.84100 0.93446 0.98117 0.90886 1.22313 0.97976 1.01278 0.99811 1.48670 1.28446 1.48235 1.06260 1.19865 0.83478 0.81765 0.85196 1.90728 1.26995 1.37345 1.86027 1.20230 0.83073 0.83159 0.85893 1.90710 1.28888 1.33549 1.87281 1.46286 1.37175 1.44807 1.05658 1.19963 0.97142 0.97411 0.78329 1.19222 0.99220 1.00005 1.04419 1.20793 0.94205 0.98606 0.96710 1.21312 1.00900 0.96908 1.01495 1.18043 0.91682 0.90696 0.91313 1.19896 0.92890 1.28242 1.11510 0.90501 1.26779 0.99221 0.92881 0.99418 1.69858 1.12248 1.33588 1.29683 0.85158 0.77119 0.79612 0.77561 1.18637 1.19373 1.18190 1.21221 0.99678 1.01514 1.03534 1.20710 0.98197 0.94469 0.95391 0.93776 0.92156 0.92396 0.93789 0.89011 0.90103 0.86883 0.87920 0.89153 0.91010 0.93090 0.92308 0.75439 0.90596 0.91262 0.87667 0.88014 0.90185 0.88224 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 9.19 71.98 0.66 -2.81 16 2 C -0.12 -2.25 5.10 30.60 0.16 -2.09 16 3 C 0.13 2.15 3.29 45.47 0.15 2.30 16 4 H 0.08 1.40 7.83 -2.39 -0.02 1.38 16 5 C -0.12 -1.17 6.33 31.98 0.20 -0.96 16 6 C -0.12 -1.24 6.40 31.78 0.20 -1.04 16 7 C 0.13 2.36 2.86 45.35 0.13 2.49 16 8 H 0.07 1.56 7.57 -2.39 -0.02 1.54 16 9 C -0.16 -3.11 8.38 71.98 0.60 -2.51 16 10 N -0.58 -13.22 2.97 -766.14 -2.27 -15.49 16 11 C 0.51 15.10 7.24 87.27 0.63 15.73 16 12 O -0.53 -17.74 11.98 -3.27 -0.04 -17.78 16 13 C 0.50 15.42 6.99 87.27 0.61 16.03 16 14 O -0.53 -16.70 11.89 -3.24 -0.04 -16.74 16 15 N -0.69 -22.46 5.54 -468.14 -2.59 -25.05 16 16 C 0.19 6.45 5.79 85.63 0.50 6.95 16 17 C -0.23 -9.14 5.27 -19.67 -0.10 -9.24 16 18 C -0.08 -3.78 9.67 22.22 0.21 -3.57 16 19 C -0.19 -9.70 8.67 22.73 0.20 -9.50 16 20 C 0.09 4.55 5.55 -21.29 -0.12 4.43 16 21 C -0.50 -26.57 9.06 23.46 0.21 -26.36 16 22 H 0.08 3.97 7.87 -2.91 -0.02 3.94 16 23 C 0.03 1.58 5.23 85.26 0.45 2.03 16 24 N -0.83 -43.42 10.86 21.82 0.24 -43.18 16 25 Si 0.98 38.24 29.58 68.60 2.03 40.27 16 26 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 27 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 28 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 29 C -0.24 -11.50 9.80 22.73 0.22 -11.28 16 30 C -0.07 -2.88 9.67 22.22 0.21 -2.67 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.66 5.33 -2.38 -0.01 1.65 16 34 H 0.04 1.08 7.06 -2.39 -0.02 1.07 16 35 H 0.09 1.27 7.86 -2.39 -0.02 1.25 16 36 H 0.08 0.80 8.06 -2.39 -0.02 0.78 16 37 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.10 0.74 7.83 -2.39 -0.02 0.73 16 39 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.05 1.34 4.70 -2.39 -0.01 1.33 16 42 H 0.06 0.99 8.00 -2.39 -0.02 0.97 16 43 H 0.41 14.12 7.95 -92.71 -0.74 13.39 16 44 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 45 H 0.07 2.27 8.08 -2.39 -0.02 2.26 16 46 H 0.11 4.29 8.06 -2.91 -0.02 4.26 16 47 H 0.10 5.59 6.21 -2.91 -0.02 5.57 16 48 H 0.29 13.70 8.30 -92.70 -0.77 12.93 16 49 H 0.10 4.53 8.06 -2.91 -0.02 4.50 16 50 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -61.50 394.23 2.67 -58.84 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: 0.21 Total: 41.21 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 5.13 Total: -22.07 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -4.63 Total: -83.73 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.08 Total: -34.53 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -61.50 2.67 -58.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118164977.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.529 kcal (2) G-P(sol) polarization free energy of solvation -61.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds