Wall clock time and date at job start Wed Apr 1 2020 05:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32986 * 119.99805 * 2 1 4 4 C 1.47102 * 119.99785 * 172.32911 * 3 2 1 5 5 O 1.21613 * 120.00171 * 356.07849 * 4 3 2 6 6 N 1.34782 * 120.00036 * 175.80242 * 4 3 2 7 7 C 1.46498 * 120.00042 * 180.27374 * 6 4 3 8 8 C 1.53001 * 109.47022 * 180.02562 * 7 6 4 9 9 N 1.46899 * 109.46964 * 179.97438 * 8 7 6 10 10 C 1.46899 * 111.00048 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47492 * 180.02562 * 10 9 8 12 12 C 1.38304 * 119.92597 * 269.72841 * 11 10 9 13 13 C 1.38101 * 120.06841 * 179.72427 * 12 11 10 14 14 C 1.38885 * 119.92623 * 0.56655 * 13 12 11 15 15 O 1.35752 * 120.06429 * 179.68269 * 14 13 12 16 16 C 1.34826 * 116.99729 * 185.95180 * 15 14 13 17 17 H 1.08005 * 120.00245 * 5.48721 * 16 15 14 18 18 C 1.38651 * 120.00111 * 185.47759 * 16 15 14 19 19 N 1.31551 * 120.00088 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00185 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47210 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47195 * 120.00399 * 20 18 16 23 23 H 1.48503 * 109.47131 * 240.00708 * 20 18 16 24 24 C 1.38877 * 119.86310 * 359.70543 * 14 13 12 25 25 C 1.38102 * 119.93100 * 0.02562 * 24 14 13 26 26 C 1.50702 * 119.99845 * 180.02562 * 2 1 3 27 27 C 1.52994 * 117.50076 * 0.88621 * 26 2 1 28 28 C 1.53003 * 117.49956 * 292.22871 * 26 2 1 29 29 H 1.08998 * 109.47174 * 90.00381 * 1 2 3 30 30 H 1.09005 * 109.46973 * 209.99264 * 1 2 3 31 31 H 1.08991 * 109.47239 * 329.99893 * 1 2 3 32 32 H 1.07999 * 120.00665 * 352.33114 * 3 2 1 33 33 H 0.97000 * 119.99554 * 0.27621 * 6 4 3 34 34 H 1.09000 * 109.47438 * 300.00078 * 7 6 4 35 35 H 1.09007 * 109.47087 * 60.00329 * 7 6 4 36 36 H 1.09000 * 109.47049 * 300.00281 * 8 7 6 37 37 H 1.08999 * 109.46998 * 59.99868 * 8 7 6 38 38 H 1.00901 * 111.00462 * 303.95800 * 9 8 7 39 39 H 1.09004 * 109.47073 * 300.00462 * 10 9 8 40 40 H 1.09000 * 109.47094 * 59.99767 * 10 9 8 41 41 H 1.08008 * 119.96610 * 359.97438 * 12 11 10 42 42 H 1.08000 * 120.03369 * 180.27408 * 13 12 11 43 43 H 0.96999 * 120.00595 * 179.97438 * 19 18 16 44 44 H 1.07994 * 120.03427 * 179.97438 * 24 14 13 45 45 H 1.07996 * 119.96350 * 180.02562 * 25 24 14 46 46 H 1.08996 * 115.54843 * 146.55596 * 26 2 1 47 47 H 1.09007 * 117.50106 * 0.02562 * 27 26 2 48 48 H 1.09005 * 117.50377 * 145.02319 * 27 26 2 49 49 H 1.08995 * 117.49964 * 214.98685 * 28 26 2 50 50 H 1.09006 * 117.49784 * 359.97323 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6331 1.1574 0.1701 5 8 4.2247 0.1162 0.3819 6 7 4.3168 2.3158 0.0856 7 6 5.7727 2.3207 0.2490 8 6 6.2968 3.7513 0.1092 9 7 7.7565 3.7562 0.2737 10 6 8.2961 5.1165 0.1461 11 6 9.7927 5.0817 0.3196 12 6 10.3452 5.2349 1.5782 13 6 11.7160 5.1978 1.7413 14 6 12.5404 5.0183 0.6382 15 8 13.8886 4.9878 0.7945 16 6 14.6338 4.9345 -0.3278 17 1 14.1591 5.0072 -1.2953 18 6 16.0096 4.7866 -0.2401 19 7 16.5878 4.6977 0.9381 20 14 17.0422 4.7134 -1.7951 21 1 16.1585 4.8355 -2.9824 22 1 18.0224 5.8289 -1.7914 23 1 17.7665 3.4181 -1.8479 24 6 11.9828 4.8704 -0.6251 25 6 10.6110 4.9029 -0.7809 26 6 2.2605 -1.3051 -0.0006 27 6 1.4386 -2.5954 -0.0221 28 6 2.1691 -2.1742 1.2553 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 1.6392 2.0829 -0.1248 33 1 3.8449 3.1463 -0.0833 34 1 6.0289 1.9350 1.2358 35 1 6.2263 1.6908 -0.5163 36 1 6.0406 4.1373 -0.8774 37 1 5.8431 4.3808 0.8747 38 1 8.0226 3.3432 1.1550 39 1 8.0541 5.5124 -0.8403 40 1 7.8560 5.7553 0.9118 41 1 9.7036 5.3796 2.4350 42 1 12.1466 5.3130 2.7251 43 1 17.5503 4.5938 0.9996 44 1 12.6213 4.7311 -1.4849 45 1 10.1768 4.7876 -1.7629 46 1 3.2062 -1.3017 -0.5425 47 1 0.3528 -2.5003 -0.0364 48 1 1.8437 -3.4411 -0.5780 49 1 3.0545 -2.7428 1.5395 50 1 1.5643 -1.8018 2.0822 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124217383.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:16 Heat of formation + Delta-G solvation = 1.949405 kcal Electronic energy + Delta-G solvation = -27494.240938 eV Core-core repulsion = 23488.216080 eV Total energy + Delta-G solvation = -4006.024858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.18161 -39.08631 -38.14823 -37.25075 -36.06836 -34.35986 -33.78351 -32.31284 -30.63649 -30.15139 -28.85673 -27.48795 -25.52828 -24.24384 -23.42762 -22.64083 -22.32372 -21.94594 -21.10401 -20.40944 -18.99073 -17.98440 -17.43863 -16.94717 -16.53414 -16.25297 -15.67147 -15.29459 -15.04470 -14.69369 -14.48116 -14.45829 -14.15676 -13.91413 -13.72975 -13.52388 -13.49478 -13.30025 -13.15212 -12.99267 -12.71607 -12.67536 -12.11346 -11.94748 -11.79500 -11.69845 -11.64511 -11.46584 -11.25684 -11.11947 -10.82322 -10.72815 -10.66274 -10.53403 -10.41026 -9.80000 -9.42164 -9.35361 -9.11503 -8.83939 -8.47850 -8.16644 -7.19159 -6.45246 -4.03839 0.94951 2.21966 2.26988 2.92336 3.01087 3.12912 3.14460 3.19996 3.64080 3.97001 4.15211 4.23731 4.38282 4.61314 4.65945 4.68776 4.74164 4.77155 4.89418 4.92549 5.04263 5.11376 5.11918 5.21925 5.25073 5.26369 5.34310 5.39395 5.40574 5.56645 5.69152 5.72281 5.76186 5.80164 5.82423 5.86738 5.88303 5.95080 6.16724 6.21618 6.22373 6.43253 6.69724 6.89106 6.93903 7.08916 7.19283 7.27750 7.34955 7.42009 7.45441 7.83140 7.99998 8.03519 9.00653 9.70698 10.72851 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019932 B = 0.001357 C = 0.001317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.427180 B =20622.170314 C =21247.534756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.000 4.000 3 C -0.230 4.230 4 C 0.544 3.456 5 O -0.534 6.534 6 N -0.728 5.728 7 C 0.121 3.879 8 C 0.048 3.952 9 N -0.682 5.682 10 C 0.121 3.879 11 C -0.188 4.188 12 C -0.068 4.068 13 C -0.194 4.194 14 C 0.156 3.844 15 O -0.178 6.178 16 C -0.391 4.391 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.235 4.235 25 C -0.048 4.048 26 C -0.121 4.121 27 C -0.190 4.190 28 C -0.155 4.155 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.399 0.601 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.345 0.655 39 H 0.071 0.929 40 H 0.029 0.971 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.269 0.731 44 H 0.127 0.873 45 H 0.107 0.893 46 H 0.134 0.866 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.421 -5.795 -2.237 33.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.002 4.002 3 C -0.251 4.251 4 C 0.334 3.666 5 O -0.413 6.413 6 N -0.380 5.380 7 C -0.003 4.003 8 C -0.082 4.082 9 N -0.314 5.314 10 C -0.007 4.007 11 C -0.190 4.190 12 C -0.087 4.087 13 C -0.213 4.213 14 C 0.102 3.898 15 O -0.081 6.081 16 C -0.467 4.467 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.254 4.254 25 C -0.067 4.067 26 C -0.139 4.139 27 C -0.226 4.226 28 C -0.192 4.192 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.145 0.855 33 H 0.233 0.767 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.163 0.837 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.125 0.875 46 H 0.152 0.848 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.116 0.884 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -31.453 -6.706 -2.448 32.253 hybrid contribution 0.089 0.885 -0.051 0.890 sum -31.365 -5.822 -2.499 31.998 Atomic orbital electron populations 1.21034 0.91096 1.03381 1.03129 1.21840 0.95231 0.93429 0.89653 1.22315 0.93358 0.98703 1.10761 1.18528 0.87809 0.83343 0.76935 1.90776 1.70865 1.31138 1.48496 1.45828 1.08211 1.09924 1.74042 1.21263 0.79098 0.97296 1.02656 1.22075 0.89499 0.95177 1.01410 1.60453 1.08160 1.21589 1.41184 1.20606 0.91884 0.87807 1.00398 1.19078 0.93383 1.12748 0.93750 1.20477 0.93791 0.98660 0.95753 1.20163 0.92449 1.11200 0.97512 1.19422 0.85152 0.92136 0.93085 1.83990 1.11332 1.78707 1.34095 1.21377 0.88571 1.51982 0.84778 0.89010 1.25293 0.96090 0.96454 0.98681 1.70043 1.10983 1.45614 1.23061 0.85649 0.79554 0.78269 0.79974 1.19069 1.20151 1.20123 1.21177 0.95145 1.11290 0.97813 1.20571 0.92686 0.96141 0.97265 1.21492 1.00695 0.87921 1.03754 1.23154 0.98917 0.98526 1.02044 1.22816 1.02665 1.02451 0.91246 0.90160 0.90671 0.90897 0.85473 0.76750 0.91551 0.90392 0.90573 0.95003 0.83655 0.91088 0.95296 0.87488 0.86605 0.92061 0.85571 0.87477 0.84828 0.88646 0.88560 0.88392 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.55 9.51 36.01 0.34 -0.21 16 2 C 0.00 0.00 5.80 -101.17 -0.59 -0.58 16 3 C -0.23 -1.70 9.62 -37.81 -0.36 -2.06 16 4 C 0.54 5.52 7.69 -12.66 -0.10 5.42 16 5 O -0.53 -7.27 13.30 5.27 0.07 -7.20 16 6 N -0.73 -5.92 5.55 -61.49 -0.34 -6.27 16 7 C 0.12 1.16 5.93 -4.04 -0.02 1.14 16 8 C 0.05 0.43 5.80 -3.82 -0.02 0.41 16 9 N -0.68 -8.06 6.49 -115.06 -0.75 -8.81 16 10 C 0.12 1.54 5.81 -4.98 -0.03 1.51 16 11 C -0.19 -3.13 5.40 -104.58 -0.56 -3.69 16 12 C -0.07 -1.18 9.69 -39.61 -0.38 -1.57 16 13 C -0.19 -4.08 9.99 -39.39 -0.39 -4.47 16 14 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 15 O -0.18 -5.11 9.76 0.05 0.00 -5.11 16 16 C -0.39 -10.97 9.44 30.88 0.29 -10.68 16 17 H 0.09 2.39 5.30 -52.48 -0.28 2.12 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 20 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 C -0.23 -5.14 9.13 -39.39 -0.36 -5.50 16 25 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 26 C -0.12 -1.06 4.32 -91.77 -0.40 -1.45 16 27 C -0.19 -1.26 9.80 -26.70 -0.26 -1.52 16 28 C -0.15 -1.24 10.24 -26.70 -0.27 -1.52 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.28 6.34 -51.93 -0.33 -0.04 16 31 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 32 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 33 H 0.40 2.08 8.46 -40.82 -0.35 1.74 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.34 4.11 8.72 -39.29 -0.34 3.77 16 39 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 40 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 41 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 42 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 43 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.13 2.78 5.72 -52.49 -0.30 2.48 16 45 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 46 H 0.13 1.50 6.27 -51.93 -0.33 1.18 16 47 H 0.10 0.49 6.29 -51.92 -0.33 0.16 16 48 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 416.65 15.07 6.28 6.28 Total: -1.00 -32.83 416.65 -10.58 -43.41 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.71 Total: 8.25 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -3.86 Total: -21.54 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: -0.33 Total: -39.68 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.07 Total: -12.32 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.83 -10.58 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124217383.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.360 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds