Wall clock time and date at job start Wed Apr 1 2020 03:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32869 * 1 3 3 C 1.47118 * 120.00108 * 2 1 4 4 C 1.50694 * 120.00324 * 0.02562 * 3 2 1 5 5 C 1.32874 * 119.99734 * 179.97438 * 3 2 1 6 6 C 1.50702 * 120.00125 * 186.26821 * 5 3 2 7 7 C 1.50693 * 109.47007 * 125.60438 * 6 5 3 8 8 O 1.21284 * 120.00405 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99964 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00052 * 180.02562 * 9 7 6 11 11 C 1.52989 * 109.47042 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47422 * 179.97438 * 11 10 9 13 13 C 1.46898 * 111.00561 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47215 * 180.02562 * 13 12 11 15 15 C 1.38307 * 119.92882 * 269.72788 * 14 13 12 16 16 C 1.38098 * 120.06417 * 179.72505 * 15 14 13 17 17 C 1.38873 * 119.93441 * 0.57351 * 16 15 14 18 18 O 1.35754 * 120.07430 * 179.68121 * 17 16 15 19 19 C 1.34829 * 117.00155 * 173.33541 * 18 17 16 20 20 H 1.08000 * 119.99949 * 5.30272 * 19 18 17 21 21 C 1.38649 * 120.00001 * 185.29280 * 19 18 17 22 22 N 1.31560 * 119.99899 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00090 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47337 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47186 * 120.00340 * 23 21 19 26 26 H 1.48502 * 109.47294 * 240.00473 * 23 21 19 27 27 C 1.38887 * 119.86273 * 359.70122 * 17 16 15 28 28 C 1.38099 * 119.92677 * 0.02562 * 27 17 16 29 29 H 1.07998 * 120.00313 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99391 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99926 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47240 * 213.44915 * 4 3 2 33 33 H 1.09002 * 109.46866 * 333.44404 * 4 3 2 34 34 H 1.08993 * 109.47304 * 93.44467 * 4 3 2 35 35 H 1.07996 * 120.00132 * 5.99776 * 5 3 2 36 36 H 1.08997 * 109.47351 * 245.61470 * 6 5 3 37 37 H 1.09005 * 109.46502 * 5.61149 * 6 5 3 38 38 H 0.97000 * 119.99529 * 0.02562 * 9 7 6 39 39 H 1.09001 * 109.47005 * 299.99985 * 10 9 7 40 40 H 1.09003 * 109.46810 * 59.99996 * 10 9 7 41 41 H 1.09002 * 109.47540 * 300.00377 * 11 10 9 42 42 H 1.09003 * 109.47258 * 60.00347 * 11 10 9 43 43 H 1.00900 * 111.00096 * 303.96034 * 12 11 10 44 44 H 1.08997 * 109.47262 * 300.00533 * 13 12 11 45 45 H 1.09008 * 109.46783 * 60.00512 * 13 12 11 46 46 H 1.07997 * 119.96507 * 359.97438 * 15 14 13 47 47 H 1.08000 * 120.03150 * 180.27570 * 16 15 14 48 48 H 0.97005 * 119.99722 * 179.97438 * 22 21 19 49 49 H 1.08000 * 120.04005 * 179.97438 * 27 17 16 50 50 H 1.07999 * 119.96916 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3109 2.5792 0.0006 5 6 3.3930 1.2740 0.0005 6 6 4.1466 2.5713 0.1430 7 6 5.1136 2.4666 1.2940 8 8 5.1844 1.4396 1.9352 9 7 5.9000 3.5144 1.6109 10 6 6.8405 3.4125 2.7295 11 6 7.6054 4.7295 2.8743 12 7 8.5481 4.6276 3.9963 13 6 9.3025 5.8767 4.1653 14 6 10.2574 5.7342 5.3224 15 6 9.8526 6.0828 6.5981 16 6 10.7235 5.9480 7.6614 17 6 12.0108 5.4730 7.4469 18 8 12.8713 5.3455 8.4890 19 6 14.0548 4.7509 8.2364 20 1 14.3172 4.4786 7.2248 21 6 14.9348 4.4892 9.2753 22 7 14.6150 4.8207 10.5077 23 14 16.5747 3.6661 8.9253 24 1 16.6931 3.3974 7.4696 25 1 17.6794 4.5610 9.3544 26 1 16.6558 2.3859 9.6736 27 6 12.4161 5.1291 6.1637 28 6 11.5387 5.2609 5.1055 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8687 -0.9353 -0.0004 32 1 1.8717 3.3227 -0.5659 33 1 0.3330 2.4343 -0.4585 34 1 1.1832 2.9245 1.0264 35 1 3.9330 0.3438 -0.0968 36 1 4.6961 2.7751 -0.7760 37 1 3.4424 3.3814 0.3326 38 1 5.8431 4.3359 1.0983 39 1 6.2912 3.2080 3.6486 40 1 7.5449 2.6026 2.5393 41 1 8.1547 4.9336 1.9552 42 1 6.9013 5.5396 3.0643 43 1 8.0702 4.3753 4.8484 44 1 9.8639 6.0881 3.2553 45 1 8.6104 6.6951 4.3637 46 1 8.8532 6.4571 6.7635 47 1 10.4054 6.2163 8.6580 48 1 15.2306 4.6373 11.2346 49 1 13.4166 4.7598 5.9936 50 1 11.8533 4.9940 4.1074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132516108.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:27 Heat of formation + Delta-G solvation = -34.352496 kcal Electronic energy + Delta-G solvation = -27120.197250 eV Core-core repulsion = 23112.598224 eV Total energy + Delta-G solvation = -4007.599027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.83255 -40.74546 -38.75516 -37.89691 -37.20631 -35.36822 -34.27402 -33.45769 -31.87471 -31.70442 -30.01962 -28.80357 -27.56275 -27.12860 -25.11817 -23.61472 -23.16385 -22.37879 -21.91105 -21.02576 -19.83196 -18.83449 -18.77942 -18.19898 -17.32871 -17.12803 -16.76512 -16.46956 -16.34023 -16.11655 -15.76150 -15.58898 -15.35261 -15.11075 -14.88317 -14.70581 -14.55742 -14.37838 -14.24010 -14.10027 -13.74017 -13.58909 -13.39134 -13.19751 -12.98746 -12.63981 -12.53369 -12.47508 -12.35258 -12.26195 -12.21487 -12.11917 -11.98471 -11.74518 -11.39730 -11.16353 -10.97229 -10.79890 -10.11805 -9.75858 -9.35875 -9.11994 -8.89753 -8.47454 -6.15542 0.42209 0.62189 0.68543 1.34750 1.42822 1.52994 1.65279 1.99537 2.17539 2.32015 2.81625 3.13478 3.53591 3.58506 3.73356 3.86857 3.95763 4.02480 4.07036 4.10781 4.19241 4.23452 4.34536 4.43991 4.46524 4.50891 4.56302 4.61423 4.62192 4.73734 4.80227 4.85793 4.89249 4.95927 4.99367 5.01251 5.11197 5.14112 5.16997 5.32175 5.41563 5.47439 5.58118 5.59508 5.73548 5.78655 5.82836 6.03466 6.04720 6.07415 6.26520 6.42854 6.57784 6.97683 7.29019 7.78850 8.76078 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021550 B = 0.001262 C = 0.001236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.967717 B =22177.268624 C =22644.133708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.146 4.146 3 C -0.110 4.110 4 C -0.125 4.125 5 C -0.144 4.144 6 C -0.105 4.105 7 C 0.510 3.490 8 O -0.590 6.590 9 N -0.715 5.715 10 C 0.124 3.876 11 C 0.060 3.940 12 N -0.699 5.699 13 C 0.126 3.874 14 C -0.160 4.160 15 C -0.059 4.059 16 C -0.206 4.206 17 C 0.112 3.888 18 O -0.235 6.235 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.022 4.022 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.252 1.252 25 H -0.267 1.267 26 H -0.269 1.269 27 C -0.245 4.245 28 C -0.050 4.050 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.420 0.580 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.344 0.656 44 H 0.087 0.913 45 H 0.054 0.946 46 H 0.149 0.851 47 H 0.111 0.889 48 H 0.272 0.728 49 H 0.115 0.885 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.952 0.333 -26.978 37.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.110 4.110 4 C -0.181 4.181 5 C -0.163 4.163 6 C -0.144 4.144 7 C 0.298 3.702 8 O -0.470 6.470 9 N -0.369 5.369 10 C -0.001 4.001 11 C -0.069 4.069 12 N -0.331 5.331 13 C -0.002 4.002 14 C -0.161 4.161 15 C -0.077 4.077 16 C -0.225 4.225 17 C 0.062 3.938 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.118 0.882 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.175 1.175 25 H -0.192 1.192 26 H -0.194 1.194 27 C -0.265 4.265 28 C -0.068 4.068 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.257 0.743 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.073 0.927 43 H 0.162 0.838 44 H 0.105 0.895 45 H 0.072 0.928 46 H 0.166 0.834 47 H 0.130 0.870 48 H 0.081 0.919 49 H 0.133 0.867 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.345 -0.605 -26.479 36.659 hybrid contribution 0.541 0.072 0.912 1.063 sum -24.804 -0.533 -25.567 35.626 Atomic orbital electron populations 1.24647 0.95267 1.03190 0.98022 1.22017 0.96093 0.96279 1.02041 1.20838 0.93959 0.95375 1.00809 1.20977 1.00750 0.93617 1.02766 1.22792 0.94325 0.98047 1.01098 1.20799 0.97805 0.98338 0.97413 1.21207 0.80990 0.82552 0.85437 1.90725 1.69816 1.31673 1.54826 1.45773 1.39617 1.17239 1.34242 1.21096 0.91182 0.98484 0.89291 1.22016 0.94056 0.95026 0.95838 1.60334 1.29785 1.34104 1.08890 1.20603 0.93994 0.90018 0.95554 1.19666 0.95367 1.06167 0.94928 1.20918 0.98712 0.97075 0.91016 1.20458 0.91940 1.09687 1.00464 1.19980 0.90906 0.94637 0.88263 1.83935 1.26463 1.70476 1.33272 1.21852 0.92045 1.38845 0.96177 0.88226 1.26568 1.03732 0.97732 0.93935 1.70192 1.38462 1.46865 1.00429 0.84541 0.74706 0.77623 0.79414 1.17534 1.19182 1.19406 1.21265 1.01806 1.10576 0.92822 1.20926 0.92880 0.95227 0.97806 0.87126 0.86827 0.87516 0.89413 0.90586 0.91254 0.88485 0.85047 0.85402 0.74296 0.92984 0.92826 0.89143 0.92677 0.83790 0.89500 0.92795 0.83364 0.87047 0.91861 0.86728 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 14.11 66.64 0.94 -0.86 16 2 C -0.15 -2.03 9.83 23.43 0.23 -1.80 16 3 C -0.11 -1.45 5.98 -18.71 -0.11 -1.56 16 4 C -0.12 -0.92 8.54 71.23 0.61 -0.31 16 5 C -0.14 -2.11 8.45 24.51 0.21 -1.91 16 6 C -0.10 -0.94 5.77 29.10 0.17 -0.77 16 7 C 0.51 8.66 7.82 87.65 0.69 9.34 16 8 O -0.59 -16.82 16.03 -3.04 -0.05 -16.87 16 9 N -0.72 -8.28 5.56 -463.06 -2.57 -10.85 16 10 C 0.12 2.01 5.93 86.38 0.51 2.52 16 11 C 0.06 0.74 5.80 86.30 0.50 1.24 16 12 N -0.70 -13.20 6.49 -517.94 -3.36 -16.56 16 13 C 0.13 2.47 5.81 85.56 0.50 2.97 16 14 C -0.16 -4.69 5.40 -19.83 -0.11 -4.80 16 15 C -0.06 -1.87 9.69 22.25 0.22 -1.65 16 16 C -0.21 -8.72 9.99 22.39 0.22 -8.49 16 17 C 0.11 5.66 6.64 22.58 0.15 5.81 16 18 O -0.23 -14.37 9.76 -22.78 -0.22 -14.59 16 19 C -0.41 -24.50 9.49 67.92 0.64 -23.85 16 20 H 0.10 5.46 5.21 -2.91 -0.02 5.44 16 21 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 22 N -0.92 -57.24 13.67 21.61 0.30 -56.94 16 23 Si 1.02 43.57 29.55 68.60 2.03 45.60 16 24 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 27 C -0.25 -10.82 9.16 22.39 0.21 -10.62 16 28 C -0.05 -1.71 9.69 22.25 0.22 -1.49 16 29 H 0.11 0.88 8.06 -2.91 -0.02 0.86 16 30 H 0.11 0.86 6.09 -2.91 -0.02 0.85 16 31 H 0.11 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.09 0.30 6.63 -2.39 -0.02 0.28 16 33 H 0.08 0.44 6.26 -2.39 -0.01 0.42 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.10 1.78 8.05 -2.91 -0.02 1.76 16 36 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.13 0.50 5.77 -2.38 -0.01 0.49 16 38 H 0.42 1.50 8.47 -92.71 -0.79 0.71 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.34 6.78 8.72 -89.69 -0.78 6.00 16 44 H 0.09 1.53 8.08 -2.39 -0.02 1.51 16 45 H 0.05 0.86 8.08 -2.38 -0.02 0.84 16 46 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 47 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 48 H 0.27 15.45 8.31 -92.70 -0.77 14.67 16 49 H 0.11 5.21 5.65 -2.91 -0.02 5.19 16 50 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -81.88 420.48 1.76 -80.12 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -0.61 Total: 27.16 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 6.25 Total: -37.05 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -5.64 Total: -84.36 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.27 Total: -31.47 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -81.88 1.76 -80.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132516108.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.763 kcal (2) G-P(sol) polarization free energy of solvation -81.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds