Wall clock time and date at job start Wed Apr 1 2020 05:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35742 * 117.00239 * 2 1 4 4 C 1.39017 * 119.88635 * 180.02562 * 3 2 1 5 5 C 1.37665 * 120.11082 * 180.02562 * 4 3 2 6 6 C 1.39971 * 119.88604 * 359.97438 * 5 4 3 7 7 C 1.46996 * 120.11317 * 180.02562 * 6 5 4 8 8 C 1.50703 * 120.00130 * 294.71839 * 7 6 5 9 9 C 1.34987 * 120.00082 * 115.00036 * 7 6 5 10 10 C 1.46251 * 119.99871 * 359.72060 * 9 7 6 11 11 O 1.21724 * 120.00125 * 353.98504 * 10 9 7 12 12 N 1.34779 * 119.99766 * 173.97774 * 10 9 7 13 13 C 1.47079 * 120.88183 * 5.09584 * 12 10 9 14 14 C 1.53696 * 108.27526 * 128.75078 * 13 12 10 15 15 N 1.46894 * 109.25834 * 54.08327 * 14 13 12 16 16 C 1.46903 * 111.00349 * 172.60628 * 15 14 13 17 17 C 1.50701 * 109.46966 * 59.41163 * 16 15 14 18 18 H 1.07995 * 119.99978 * 355.04523 * 17 16 15 19 19 C 1.37874 * 119.99709 * 175.04459 * 17 16 15 20 20 N 1.31515 * 120.00511 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99682 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46643 * 90.00548 * 21 19 17 23 23 H 1.48501 * 109.46812 * 209.99893 * 21 19 17 24 24 H 1.48490 * 109.47224 * 330.00337 * 21 19 17 25 25 C 1.46902 * 111.26813 * 296.75405 * 15 14 13 26 26 C 1.47084 * 120.88024 * 185.36785 * 12 10 9 27 27 C 1.39978 * 119.77566 * 0.27278 * 6 5 4 28 28 C 1.37661 * 119.87888 * 359.45206 * 27 6 5 29 29 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47032 * 300.00173 * 1 2 3 31 31 H 1.08996 * 109.47220 * 60.00212 * 1 2 3 32 32 H 1.07995 * 119.94610 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.05812 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.47125 * 270.27786 * 8 7 6 35 35 H 1.09000 * 109.46598 * 30.28085 * 8 7 6 36 36 H 1.08994 * 109.47100 * 150.27396 * 8 7 6 37 37 H 1.08000 * 119.99784 * 179.72085 * 9 7 6 38 38 H 1.08995 * 109.62693 * 248.51881 * 13 12 10 39 39 H 1.08994 * 109.62866 * 9.09936 * 13 12 10 40 40 H 1.09003 * 109.64982 * 294.07842 * 14 13 12 41 41 H 1.09007 * 109.41706 * 173.94647 * 14 13 12 42 42 H 1.09000 * 109.47053 * 179.41297 * 16 15 14 43 43 H 1.08997 * 109.46605 * 299.41071 * 16 15 14 44 44 H 0.96993 * 120.00210 * 179.97438 * 20 19 17 45 45 H 1.08993 * 109.49645 * 303.14363 * 25 15 14 46 46 H 1.09004 * 109.48897 * 183.06346 * 25 15 14 47 47 H 1.09001 * 109.62503 * 350.90005 * 26 12 10 48 48 H 1.08997 * 109.62403 * 111.48162 * 26 12 10 49 49 H 1.07997 * 120.06074 * 179.72655 * 27 6 5 50 50 H 1.08004 * 119.94270 * 180.27521 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4337 1.2794 -0.0005 5 6 4.0635 2.5035 0.0000 6 6 3.3035 3.6789 0.0005 7 6 3.9708 4.9886 0.0005 8 6 4.7997 5.4121 1.1858 9 6 3.8366 5.8145 -1.0587 10 6 3.0322 5.4037 -2.2090 11 8 2.5744 4.2770 -2.2603 12 7 2.7977 6.2727 -3.2122 13 6 3.4313 7.6000 -3.2247 14 6 4.1018 7.8010 -4.5930 15 7 3.1125 7.5756 -5.6552 16 6 3.6632 7.9272 -6.9709 17 6 4.8840 7.0873 -7.2452 18 1 5.2643 6.4225 -6.4838 19 6 5.5154 7.1676 -8.4683 20 7 5.0526 7.9775 -9.3954 21 14 7.0291 6.1270 -8.8081 22 1 6.6141 4.8239 -9.3869 23 1 7.9121 6.8365 -9.7684 24 1 7.7642 5.8934 -7.5392 25 6 2.6232 6.1905 -5.6424 26 6 1.8968 5.9211 -4.3204 27 6 1.9058 3.6029 0.0063 28 6 1.2858 2.3739 0.0000 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0192 0.3719 -0.0005 33 1 5.1422 2.5568 0.0000 34 1 4.1669 5.9335 1.9040 35 1 5.2353 4.5313 1.6576 36 1 5.5962 6.0774 0.8530 37 1 4.3233 6.7787 -1.0568 38 1 2.6744 8.3685 -3.0680 39 1 4.1817 7.6550 -2.4361 40 1 4.9240 7.0942 -4.7057 41 1 4.4848 8.8192 -4.6628 42 1 2.9137 7.7410 -7.7401 43 1 3.9383 8.9819 -6.9795 44 1 5.4970 8.0343 -10.2556 45 1 3.4658 5.5062 -5.7405 46 1 1.9338 6.0407 -6.4733 47 1 1.6323 4.8656 -4.2564 48 1 0.9953 6.5314 -4.2669 49 1 1.3149 4.5069 0.0112 50 1 0.2074 2.3141 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171874651.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:59 Heat of formation + Delta-G solvation = -11.019258 kcal Electronic energy + Delta-G solvation = -30261.786217 eV Core-core repulsion = 26255.198995 eV Total energy + Delta-G solvation = -4006.587221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.36258 -39.72442 -38.09128 -37.07035 -34.66311 -34.35567 -32.33141 -31.14430 -30.82993 -29.48923 -28.62181 -27.64746 -27.25340 -25.27393 -23.41235 -22.86459 -22.59998 -22.18865 -20.85025 -19.37546 -18.43189 -18.05470 -17.25643 -16.31788 -16.22410 -15.97082 -15.84328 -15.02958 -14.81130 -14.65675 -14.41438 -14.28117 -13.96110 -13.92122 -13.73207 -13.55569 -13.34736 -13.18295 -13.15464 -12.66786 -12.56719 -12.42503 -12.14323 -12.03551 -11.83438 -11.39448 -11.21069 -11.15099 -11.03163 -10.95422 -10.87025 -10.68038 -10.57562 -10.23576 -9.93299 -9.69590 -9.50388 -9.26632 -8.93100 -8.47543 -8.27948 -7.82859 -7.26218 -6.07446 -4.16892 0.97797 1.43202 1.65446 3.17755 3.25139 3.29963 3.32126 3.35208 3.47609 3.77534 4.37368 4.51348 4.64400 4.74418 4.83938 4.88150 4.94299 4.98825 5.13927 5.22149 5.23144 5.25262 5.30343 5.32157 5.41720 5.45656 5.51276 5.55841 5.66269 5.70175 5.76312 5.89714 5.97633 6.01778 6.04936 6.12703 6.23840 6.32540 6.41966 6.44331 6.57416 6.61021 6.72748 6.74019 6.84920 7.19649 7.33993 7.46475 7.70143 7.84924 7.96579 8.17565 8.23625 8.47149 8.93052 9.50674 10.97664 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012817 B = 0.002582 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.058416 B =10840.560124 C =11249.279649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.126 3.874 4 C -0.156 4.156 5 C -0.066 4.066 6 C -0.077 4.077 7 C -0.001 4.001 8 C -0.120 4.120 9 C -0.210 4.210 10 C 0.539 3.461 11 O -0.536 6.536 12 N -0.603 5.603 13 C 0.109 3.891 14 C 0.049 3.951 15 N -0.541 5.541 16 C 0.188 3.812 17 C -0.551 4.551 18 H 0.056 0.944 19 C 0.066 3.934 20 N -0.890 5.890 21 Si 0.888 3.112 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.051 3.949 26 C 0.117 3.883 27 C -0.019 4.019 28 C -0.206 4.206 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.077 0.923 42 H 0.035 0.965 43 H 0.030 0.970 44 H 0.263 0.737 45 H 0.042 0.958 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.066 0.934 49 H 0.115 0.885 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 -7.278 23.355 25.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.081 3.919 4 C -0.174 4.174 5 C -0.084 4.084 6 C -0.077 4.077 7 C -0.003 4.003 8 C -0.177 4.177 9 C -0.231 4.231 10 C 0.330 3.670 11 O -0.416 6.416 12 N -0.336 5.336 13 C -0.014 4.014 14 C -0.081 4.081 15 N -0.265 5.265 16 C 0.062 3.938 17 C -0.590 4.590 18 H 0.074 0.926 19 C -0.137 4.137 20 N -0.529 5.529 21 Si 0.716 3.284 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.078 4.078 26 C -0.005 4.005 27 C -0.037 4.037 28 C -0.225 4.225 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.151 0.849 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.072 0.928 45 H 0.060 0.940 46 H 0.095 0.905 47 H 0.104 0.896 48 H 0.084 0.916 49 H 0.133 0.867 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.772 -7.672 23.197 25.354 hybrid contribution 1.407 -0.706 -0.869 1.798 sum -5.365 -8.378 22.328 24.444 Atomic orbital electron populations 1.23020 0.78617 1.03639 1.01389 1.85999 1.21246 1.27388 1.88805 1.19098 0.92287 0.83871 0.96600 1.20161 0.91207 0.98288 1.07792 1.20833 0.99160 0.90625 0.97807 1.18541 0.93148 0.91977 1.04030 1.21043 0.93081 0.91826 0.94392 1.20951 0.98985 1.02243 0.95507 1.22998 1.04275 1.01155 0.94663 1.18316 0.80938 0.84777 0.82996 1.90866 1.52578 1.19021 1.79134 1.48097 1.46578 1.15993 1.22885 1.22123 0.97041 0.83641 0.98623 1.22330 0.94174 1.01656 0.89930 1.62488 1.36547 1.20785 1.06685 1.19762 0.93788 0.96228 0.83983 1.21738 1.12924 1.24932 0.99454 0.92598 1.24952 0.97356 0.95254 0.96113 1.69934 1.40474 1.37060 1.05384 0.86653 0.83053 0.80508 0.78179 1.20586 1.21069 1.19972 1.22225 0.98960 0.91255 0.95377 1.21782 0.92102 1.01190 0.85460 1.20709 0.92995 0.96568 0.93445 1.20978 0.99552 0.92259 1.09689 0.88477 0.92829 0.92564 0.85557 0.85725 0.90276 0.90890 0.90796 0.84899 0.91178 0.90214 0.93820 0.90416 0.94689 0.95234 0.92751 0.94004 0.90529 0.89568 0.91599 0.86728 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.86 10.49 -18.93 -0.20 -4.06 16 3 C 0.13 1.64 6.70 -39.00 -0.26 1.38 16 4 C -0.16 -1.97 9.97 -39.50 -0.39 -2.36 16 5 C -0.07 -0.82 9.69 -39.14 -0.38 -1.19 16 6 C -0.08 -0.98 3.71 -105.05 -0.39 -1.37 16 7 C 0.00 -0.02 5.48 -102.23 -0.56 -0.58 16 8 C -0.12 -0.89 10.03 36.01 0.36 -0.53 16 9 C -0.21 -2.58 9.00 -37.52 -0.34 -2.91 16 10 C 0.54 8.48 7.43 -13.04 -0.10 8.38 16 11 O -0.54 -9.73 11.94 5.17 0.06 -9.67 16 12 N -0.60 -9.52 3.00 -173.88 -0.52 -10.04 16 13 C 0.11 1.54 6.50 -3.36 -0.02 1.52 16 14 C 0.05 0.88 5.17 -3.47 -0.02 0.87 16 15 N -0.54 -11.19 4.83 -235.46 -1.14 -12.33 16 16 C 0.19 4.71 5.11 -4.97 -0.03 4.69 16 17 C -0.55 -14.98 7.76 -34.44 -0.27 -15.25 16 18 H 0.06 1.53 5.88 -52.49 -0.31 1.23 16 19 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 20 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 21 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.05 1.00 5.25 -3.70 -0.02 0.98 16 26 C 0.12 1.95 6.61 -3.60 -0.02 1.92 16 27 C -0.02 -0.25 7.21 -39.14 -0.28 -0.53 16 28 C -0.21 -2.57 9.01 -39.50 -0.36 -2.93 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 31 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 32 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.49 8.03 -51.93 -0.42 0.08 16 36 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 37 H 0.13 1.31 5.94 -52.49 -0.31 1.00 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.08 0.91 5.46 -51.93 -0.28 0.63 16 40 H 0.04 0.90 6.61 -51.93 -0.34 0.56 16 41 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 42 H 0.03 0.95 8.07 -51.93 -0.42 0.53 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.04 0.93 7.11 -51.93 -0.37 0.56 16 46 H 0.08 1.49 8.05 -51.93 -0.42 1.07 16 47 H 0.09 1.47 7.04 -51.93 -0.37 1.10 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 50 H 0.12 1.28 6.27 -52.48 -0.33 0.95 16 LS Contribution 397.43 15.07 5.99 5.99 Total: -1.00 -32.59 397.43 -9.99 -42.57 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.72 Total: 1.19 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -2.18 Total: -4.94 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.92 Total: -47.56 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.14 Total: -13.73 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.59 -9.99 -42.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171874651.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.553 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds