Wall clock time and date at job start Wed Apr 1 2020 03:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47165 * 2 1 4 4 C 1.52999 * 109.47080 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47240 * 180.02562 * 4 3 2 6 6 C 1.37098 * 120.00139 * 85.59547 * 5 4 3 7 7 H 1.08002 * 120.00235 * 210.56289 * 6 5 4 8 8 C 1.38947 * 119.99483 * 30.56528 * 6 5 4 9 9 N 1.31410 * 120.00179 * 40.31523 * 8 6 5 10 10 Si 1.86801 * 119.99811 * 220.31086 * 8 6 5 11 11 H 1.48503 * 109.47130 * 179.97438 * 10 8 6 12 12 H 1.48495 * 109.47587 * 300.00467 * 10 8 6 13 13 H 1.48500 * 109.46891 * 60.00605 * 10 8 6 14 14 C 1.34784 * 120.00086 * 265.60527 * 5 4 3 15 15 O 1.21297 * 119.99978 * 359.97438 * 14 5 4 16 16 C 1.50694 * 120.00030 * 179.97438 * 14 5 4 17 17 N 1.46497 * 109.47268 * 179.97438 * 16 14 5 18 18 C 1.46765 * 124.34636 * 89.99724 * 17 16 14 19 19 C 1.54482 * 105.47549 * 197.01914 * 18 17 16 20 20 H 1.08994 * 110.96807 * 92.70838 * 19 18 17 21 21 C 1.50705 * 110.97101 * 216.43134 * 19 18 17 22 22 C 1.38233 * 119.99565 * 59.72596 * 21 19 18 23 23 C 1.38242 * 119.99423 * 179.74257 * 22 21 19 24 24 C 1.38231 * 120.00149 * 0.53418 * 23 22 21 25 25 C 1.38244 * 119.99810 * 359.74136 * 24 23 22 26 26 C 1.38226 * 120.00106 * 239.99878 * 21 19 18 27 27 C 1.54633 * 101.76440 * 334.58578 * 19 18 17 28 28 C 1.34417 * 124.35692 * 269.70478 * 17 16 14 29 29 O 1.21289 * 124.93481 * 359.56972 * 28 17 16 30 30 H 1.09004 * 109.47015 * 60.00441 * 1 2 3 31 31 H 1.08998 * 109.47313 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47451 * 300.00264 * 1 2 3 33 33 H 1.09002 * 109.47233 * 239.99690 * 2 1 3 34 34 H 1.08999 * 109.47046 * 120.00061 * 2 1 3 35 35 H 1.09004 * 109.46814 * 59.99927 * 3 2 1 36 36 H 1.08999 * 109.47189 * 299.99974 * 3 2 1 37 37 H 1.09004 * 109.46905 * 60.00536 * 4 3 2 38 38 H 1.08999 * 109.47540 * 300.00312 * 4 3 2 39 39 H 0.96999 * 120.00159 * 5.84906 * 9 8 6 40 40 H 1.08996 * 109.47363 * 299.99937 * 16 14 5 41 41 H 1.09008 * 109.47157 * 59.99443 * 16 14 5 42 42 H 1.09000 * 110.24768 * 316.02366 * 18 17 16 43 43 H 1.09003 * 110.24570 * 78.01882 * 18 17 16 44 44 H 1.07999 * 120.00934 * 359.97438 * 22 21 19 45 45 H 1.08002 * 120.00076 * 180.29574 * 23 22 21 46 46 H 1.07994 * 120.00212 * 179.76412 * 24 23 22 47 47 H 1.08001 * 119.99936 * 180.02562 * 25 24 23 48 48 H 1.08009 * 120.00062 * 0.02562 * 26 21 19 49 49 H 1.08998 * 110.48648 * 143.47174 * 27 19 18 50 50 H 1.08999 * 110.48264 * 265.98580 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2004 3.5000 1.1853 7 1 4.0712 4.5719 1.2138 8 6 4.5108 2.8064 2.3486 9 7 5.3832 1.8243 2.3151 10 14 3.6878 3.2701 3.9602 11 1 4.1864 2.3849 5.0433 12 1 4.0049 4.6829 4.2895 13 1 2.2172 3.1105 3.8288 14 6 4.3679 3.4296 -1.1622 15 8 4.2425 2.8311 -2.2098 16 6 4.8697 4.8505 -1.1616 17 7 5.1335 5.2758 -2.5384 18 6 4.1435 5.9185 -3.4107 19 6 4.7061 5.7825 -4.8430 20 1 4.3262 4.8832 -5.3275 21 6 4.3933 7.0071 -5.6639 22 6 4.8538 8.2462 -5.2596 23 6 4.5714 9.3687 -6.0154 24 6 3.8192 9.2536 -7.1695 25 6 3.3540 8.0152 -7.5707 26 6 3.6413 6.8920 -6.8179 27 6 6.2248 5.6677 -4.5756 28 6 6.3150 5.1328 -3.1634 29 8 7.3081 4.6435 -2.6679 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9337 0.9285 -0.8892 38 1 3.9330 0.9287 0.8908 39 1 5.8732 1.6384 1.4988 40 1 4.1166 5.5016 -0.7179 41 1 5.7899 4.9106 -0.5804 42 1 3.1838 5.4078 -3.3323 43 1 4.0345 6.9704 -3.1466 44 1 5.4373 8.3369 -4.3553 45 1 4.9351 10.3362 -5.7022 46 1 3.5954 10.1311 -7.7579 47 1 2.7667 7.9252 -8.4725 48 1 3.2775 5.9245 -7.1312 49 1 6.6847 4.9739 -5.2794 50 1 6.6989 6.6469 -4.6417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180308898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:11 Heat of formation + Delta-G solvation = -50.451464 kcal Electronic energy + Delta-G solvation = -30287.017726 eV Core-core repulsion = 26278.720596 eV Total energy + Delta-G solvation = -4008.297130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.59242 -39.16884 -38.42196 -36.14581 -35.51258 -34.06772 -33.32356 -31.49634 -31.13257 -30.30905 -28.78471 -27.30483 -26.47304 -24.60756 -23.44063 -22.81808 -22.52782 -20.60716 -20.50771 -19.65276 -19.06490 -17.55460 -17.08502 -16.60062 -15.93642 -15.79779 -15.36580 -14.94277 -14.84060 -14.68636 -14.48584 -14.22111 -13.83545 -13.61904 -13.51634 -13.38154 -13.20168 -13.14837 -12.78622 -12.74480 -12.42883 -12.34941 -12.02457 -11.92347 -11.57083 -11.48947 -11.28465 -11.17301 -10.98253 -10.88452 -10.68685 -10.61799 -10.60368 -10.29893 -10.17417 -9.82077 -9.50354 -9.21765 -9.11725 -8.85466 -8.76934 -8.05035 -7.84836 -6.80953 -4.01463 1.11534 1.19663 2.91743 3.19652 3.29835 3.34539 3.47601 3.56194 3.78697 4.17997 4.32188 4.51939 4.60513 4.65408 4.77413 4.79204 4.91235 4.92194 5.06559 5.15375 5.29920 5.39858 5.42739 5.43054 5.53574 5.56832 5.65206 5.75942 5.78551 5.82841 5.87475 5.92202 5.97989 6.09767 6.16740 6.19707 6.25307 6.26834 6.30642 6.31062 6.42107 6.44279 6.56447 6.63407 6.78493 6.81633 6.93223 7.04650 7.50521 7.57352 7.92669 8.31595 8.53942 8.92980 9.43185 9.80055 10.40526 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012643 B = 0.002754 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.216174 B =10162.937412 C =11054.468155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.121 4.121 4 C 0.107 3.893 5 N -0.438 5.438 6 C -0.459 4.459 7 H 0.084 0.916 8 C 0.031 3.969 9 N -0.836 5.836 10 Si 1.053 2.947 11 H -0.280 1.280 12 H -0.282 1.282 13 H -0.282 1.282 14 C 0.445 3.555 15 O -0.602 6.602 16 C 0.129 3.871 17 N -0.597 5.597 18 C 0.117 3.883 19 C -0.061 4.061 20 H 0.101 0.899 21 C -0.068 4.068 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.111 4.111 27 C -0.144 4.144 28 C 0.520 3.480 29 O -0.532 6.532 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.282 0.718 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.124 0.876 49 H 0.101 0.899 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.299 11.001 -13.173 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.017 4.017 5 N -0.157 5.157 6 C -0.585 4.585 7 H 0.102 0.898 8 C -0.182 4.182 9 N -0.466 5.466 10 Si 0.879 3.121 11 H -0.205 1.205 12 H -0.207 1.207 13 H -0.208 1.208 14 C 0.233 3.767 15 O -0.488 6.488 16 C 0.005 3.995 17 N -0.329 5.329 18 C -0.006 4.006 19 C -0.079 4.079 20 H 0.119 0.881 21 C -0.068 4.068 22 C -0.132 4.132 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.129 4.129 27 C -0.184 4.184 28 C 0.307 3.693 29 O -0.409 6.409 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.120 0.880 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.953 9.961 -11.712 16.487 hybrid contribution -0.029 0.502 -1.456 1.541 sum -5.982 10.463 -13.168 17.850 Atomic orbital electron populations 1.21743 0.96374 1.00818 1.01554 1.21460 0.95293 0.97582 1.01652 1.21791 0.96718 0.95676 1.01750 1.21369 0.92962 0.85175 1.02163 1.43559 1.54763 1.11992 1.05379 1.20020 1.57606 0.94630 0.86240 0.89797 1.26187 0.94149 0.95409 1.02462 1.70729 1.14444 1.30747 1.30639 0.83769 0.76709 0.76546 0.75124 1.20530 1.20746 1.20838 1.20685 0.81932 0.89646 0.84423 1.90515 1.59252 1.67083 1.31983 1.21014 1.03216 0.94685 0.80607 1.47865 1.11915 1.59285 1.13858 1.22084 0.93144 0.97546 0.87852 1.21090 0.95337 0.96787 0.94727 0.88081 1.19636 0.97846 0.93943 0.95387 1.21066 1.00102 0.92092 0.99961 1.21139 0.98697 0.98495 0.95256 1.21156 0.98528 0.97547 0.97067 1.21142 1.00086 0.92706 0.99798 1.21099 0.98218 0.98952 0.94651 1.22441 0.96312 1.03770 0.95866 1.20699 0.82784 0.77904 0.87864 1.90722 1.33566 1.45033 1.71534 0.93110 0.93294 0.92860 0.92469 0.92096 0.91681 0.92882 0.92134 0.90106 0.90700 0.88855 0.87661 0.90136 0.91133 0.85851 0.86060 0.86261 0.86098 0.85819 0.88046 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -2.02 5.93 -26.73 -0.16 -2.18 16 3 C -0.12 -2.42 5.52 -26.73 -0.15 -2.56 16 4 C 0.11 2.50 4.95 -4.04 -0.02 2.48 16 5 N -0.44 -10.84 2.44 -114.81 -0.28 -11.12 16 6 C -0.46 -11.45 8.53 -14.93 -0.13 -11.58 16 7 H 0.08 2.01 7.00 -52.49 -0.37 1.65 16 8 C 0.03 0.79 4.51 -17.47 -0.08 0.71 16 9 N -0.84 -22.48 12.22 55.50 0.68 -21.80 16 10 Si 1.05 21.95 30.05 -169.99 -5.11 16.84 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 13 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 14 C 0.44 10.83 7.71 -10.99 -0.08 10.74 16 15 O -0.60 -15.85 15.95 5.54 0.09 -15.76 16 16 C 0.13 2.66 5.03 -5.20 -0.03 2.63 16 17 N -0.60 -10.77 2.42 -173.78 -0.42 -11.19 16 18 C 0.12 1.61 6.84 -3.12 -0.02 1.59 16 19 C -0.06 -0.72 3.37 -90.13 -0.30 -1.03 16 20 H 0.10 1.22 7.96 -51.93 -0.41 0.81 16 21 C -0.07 -0.69 4.96 -104.63 -0.52 -1.21 16 22 C -0.11 -1.09 8.05 -39.58 -0.32 -1.41 16 23 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 24 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 25 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 26 C -0.11 -1.04 9.69 -39.59 -0.38 -1.42 16 27 C -0.14 -1.91 6.30 -26.74 -0.17 -2.08 16 28 C 0.52 9.81 8.02 -10.86 -0.09 9.73 16 29 O -0.53 -12.46 17.59 5.55 0.10 -12.37 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.47 7.29 -51.93 -0.38 1.09 16 38 H 0.08 1.99 5.75 -51.93 -0.30 1.69 16 39 H 0.28 7.92 8.13 -40.82 -0.33 7.59 16 40 H 0.09 1.70 7.64 -51.93 -0.40 1.30 16 41 H 0.11 2.34 7.87 -51.92 -0.41 1.93 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.07 0.82 7.13 -51.93 -0.37 0.45 16 44 H 0.12 1.11 7.34 -52.49 -0.39 0.73 16 45 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 47 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 48 H 0.12 1.01 7.99 -52.48 -0.42 0.59 16 49 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 50 H 0.10 1.15 6.67 -51.93 -0.35 0.81 16 LS Contribution 409.68 15.07 6.17 6.17 Total: -1.00 -32.03 409.68 -10.03 -42.06 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -7.99 Total: 8.62 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -3.27 Total: -1.46 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.02 Total: -44.11 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: 0.19 Total: -28.12 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.11 Total: 16.84 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.03 -10.03 -42.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180308898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.393 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds