Wall clock time and date at job start Wed Apr 1 2020 03:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46799 * 2 1 4 4 C 1.53010 * 109.46992 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46790 * 180.02562 * 4 3 2 6 6 C 1.37105 * 119.99784 * 94.47263 * 5 4 3 7 7 H 1.07994 * 119.99278 * 216.07761 * 6 5 4 8 8 C 1.38945 * 120.00156 * 36.07472 * 6 5 4 9 9 N 1.31409 * 119.99881 * 21.37200 * 8 6 5 10 10 Si 1.86799 * 120.00263 * 201.36373 * 8 6 5 11 11 H 1.48508 * 109.46806 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46888 * 119.99766 * 10 8 6 13 13 H 1.48489 * 109.47576 * 240.00507 * 10 8 6 14 14 C 1.34775 * 119.99758 * 274.46597 * 5 4 3 15 15 O 1.21292 * 120.00425 * 0.02562 * 14 5 4 16 16 C 1.50705 * 119.99556 * 180.02562 * 14 5 4 17 17 H 1.08995 * 110.21588 * 33.68045 * 16 14 5 18 18 C 1.54477 * 110.24863 * 271.74810 * 16 14 5 19 19 C 1.54620 * 101.76888 * 215.58659 * 18 16 14 20 20 C 1.51283 * 104.19393 * 24.79730 * 19 18 16 21 21 O 1.21289 * 124.94376 * 163.71655 * 20 19 18 22 22 N 1.34417 * 110.11542 * 343.74599 * 20 19 18 23 23 C 1.46504 * 124.34835 * 179.59168 * 22 20 19 24 24 C 1.50696 * 109.47159 * 87.45356 * 23 22 20 25 25 C 1.38233 * 120.00181 * 264.34612 * 24 23 22 26 26 C 1.38240 * 120.00298 * 179.76613 * 25 24 23 27 27 C 1.38233 * 119.99595 * 0.50548 * 26 25 24 28 28 C 1.38232 * 120.00273 * 359.74576 * 27 26 25 29 29 C 1.38236 * 119.99888 * 0.02562 * 28 27 26 30 30 H 1.08995 * 109.47218 * 60.00264 * 1 2 3 31 31 H 1.09004 * 109.46775 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47258 * 299.99711 * 1 2 3 33 33 H 1.08994 * 109.47258 * 240.00289 * 2 1 3 34 34 H 1.08995 * 109.47218 * 119.99736 * 2 1 3 35 35 H 1.09005 * 109.47421 * 60.00233 * 3 2 1 36 36 H 1.08992 * 109.47491 * 299.99666 * 3 2 1 37 37 H 1.09001 * 109.46672 * 300.00232 * 4 3 2 38 38 H 1.08996 * 109.46571 * 60.00133 * 4 3 2 39 39 H 0.97006 * 120.00285 * 180.02562 * 9 8 6 40 40 H 1.09008 * 110.96996 * 333.70620 * 18 16 14 41 41 H 1.09003 * 110.96652 * 97.42603 * 18 16 14 42 42 H 1.08993 * 110.49102 * 143.47388 * 19 18 16 43 43 H 1.08997 * 110.48626 * 266.12255 * 19 18 16 44 44 H 1.09002 * 109.47101 * 207.44939 * 23 22 20 45 45 H 1.08995 * 109.47043 * 327.44942 * 23 22 20 46 46 H 1.08001 * 119.99970 * 359.97438 * 25 24 23 47 47 H 1.07999 * 120.00017 * 180.22986 * 26 25 24 48 48 H 1.08004 * 120.00060 * 179.72957 * 27 26 25 49 49 H 1.08006 * 120.00195 * 179.97438 * 28 27 26 50 50 H 1.08003 * 120.00078 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8239 0.0013 6 6 4.3735 3.4389 1.1854 7 1 4.1704 4.4913 1.3179 8 6 4.9541 2.7083 2.2147 9 7 5.5797 1.5834 1.9503 10 14 4.8457 3.3253 3.9746 11 1 4.0939 4.6057 4.0047 12 1 4.1420 2.3189 4.8095 13 1 6.2143 3.5418 4.5085 14 6 4.1976 3.4898 -1.1622 15 8 3.9184 2.9458 -2.2096 16 6 4.7004 4.9105 -1.1615 17 1 5.4214 5.0545 -0.3569 18 6 3.5204 5.8951 -1.0045 19 6 3.9744 7.0757 -1.8937 20 6 4.9245 6.4467 -2.8889 21 8 5.2851 6.9615 -3.9262 22 7 5.3105 5.2339 -2.4565 23 6 6.2229 4.3486 -3.1846 24 6 7.6456 4.6776 -2.8125 25 6 8.3882 5.5310 -3.6070 26 6 9.6917 5.8367 -3.2631 27 6 10.2561 5.2807 -2.1303 28 6 9.5153 4.4233 -1.3386 29 6 8.2103 4.1213 -1.6799 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 3.9329 0.9289 0.8909 38 1 3.9337 0.9287 -0.8891 39 1 5.9847 1.0730 2.6690 40 1 2.5949 5.4578 -1.3793 41 1 3.4092 6.2082 0.0337 42 1 3.1205 7.5166 -2.4079 43 1 4.4905 7.8270 -1.2961 44 1 6.0094 3.3122 -2.9230 45 1 6.0861 4.4882 -4.2568 46 1 7.9488 5.9616 -4.4947 47 1 10.2706 6.5063 -3.8819 48 1 11.2760 5.5161 -1.8639 49 1 9.9565 3.9886 -0.4537 50 1 7.6316 3.4511 -1.0616 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181449642.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:53 Heat of formation + Delta-G solvation = -50.615118 kcal Electronic energy + Delta-G solvation = -31537.526067 eV Core-core repulsion = 27529.221841 eV Total energy + Delta-G solvation = -4008.304227 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.44864 -38.78503 -38.35130 -36.01144 -35.07888 -34.08814 -33.35875 -31.65213 -30.61179 -30.25363 -29.08368 -27.18839 -25.80547 -25.05022 -23.15018 -22.36678 -21.67516 -21.24427 -20.55200 -19.45127 -18.87290 -17.38299 -16.78169 -16.38658 -15.89887 -15.46588 -15.09225 -14.87490 -14.76697 -14.63927 -14.45543 -14.06705 -13.94325 -13.34754 -13.29851 -13.11987 -13.03251 -12.85809 -12.49063 -12.35994 -12.33653 -12.10396 -11.99560 -11.71146 -11.53740 -11.35580 -11.23682 -11.07661 -10.91970 -10.72814 -10.66554 -10.61482 -10.57109 -10.43590 -10.31707 -9.82439 -9.48685 -9.23964 -8.90561 -8.64515 -8.50458 -8.08640 -7.64594 -6.54787 -4.24082 1.53213 1.67919 2.95758 2.98100 3.12536 3.14233 3.36069 3.68798 3.95634 4.15835 4.54546 4.69557 4.77111 4.97642 5.09921 5.13218 5.24542 5.26179 5.40592 5.42318 5.43055 5.49273 5.60023 5.64210 5.77998 5.85588 5.92437 5.94717 5.96969 6.06173 6.15566 6.16600 6.18927 6.28331 6.30385 6.33741 6.34321 6.40083 6.50547 6.64067 6.70630 6.75242 6.77229 6.86543 6.93335 7.00915 7.21493 7.26630 7.34153 7.58311 7.75483 8.19340 8.55300 8.90181 9.32649 9.75482 10.45667 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009477 B = 0.004236 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.857283 B = 6607.722411 C = 7704.626701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.116 3.884 5 N -0.427 5.427 6 C -0.347 4.347 7 H 0.091 0.909 8 C 0.050 3.950 9 N -0.850 5.850 10 Si 0.909 3.091 11 H -0.266 1.266 12 H -0.278 1.278 13 H -0.281 1.281 14 C 0.461 3.539 15 O -0.595 6.595 16 C 0.125 3.875 17 H 0.106 0.894 18 C -0.115 4.115 19 C -0.153 4.153 20 C 0.518 3.482 21 O -0.546 6.546 22 N -0.582 5.582 23 C 0.168 3.832 24 C -0.104 4.104 25 C -0.100 4.100 26 C -0.130 4.130 27 C -0.122 4.122 28 C -0.123 4.123 29 C -0.094 4.094 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.105 0.895 38 H 0.052 0.948 39 H 0.271 0.729 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.122 0.878 47 H 0.117 0.883 48 H 0.116 0.884 49 H 0.120 0.880 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.649 3.851 -1.144 4.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.007 4.007 5 N -0.144 5.144 6 C -0.475 4.475 7 H 0.109 0.891 8 C -0.157 4.157 9 N -0.485 5.485 10 Si 0.735 3.265 11 H -0.190 1.190 12 H -0.204 1.204 13 H -0.206 1.206 14 C 0.248 3.752 15 O -0.481 6.481 16 C 0.018 3.982 17 H 0.123 0.877 18 C -0.153 4.153 19 C -0.193 4.193 20 C 0.306 3.694 21 O -0.425 6.425 22 N -0.313 5.313 23 C 0.046 3.954 24 C -0.105 4.105 25 C -0.118 4.118 26 C -0.148 4.148 27 C -0.141 4.141 28 C -0.141 4.141 29 C -0.112 4.112 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.100 0.900 46 H 0.140 0.860 47 H 0.135 0.865 48 H 0.134 0.866 49 H 0.138 0.862 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.841 3.603 -2.110 4.259 hybrid contribution 0.064 0.155 1.224 1.235 sum 0.906 3.758 -0.887 3.966 Atomic orbital electron populations 1.21755 0.96607 1.00725 1.01478 1.21424 0.95019 0.97711 1.01590 1.21901 0.97782 0.95574 1.01367 1.21422 0.91173 0.84665 1.03466 1.43451 1.54514 1.11870 1.04607 1.19450 1.41317 0.96168 0.90560 0.89107 1.25332 0.93807 0.96235 1.00373 1.69944 1.29715 1.15576 1.33311 0.86161 0.78304 0.79358 0.82672 1.19001 1.20389 1.20642 1.20235 0.82511 0.88183 0.84227 1.90553 1.55915 1.69942 1.31653 1.21551 0.96108 0.94818 0.85730 0.87664 1.22485 0.97736 0.93852 1.01238 1.22331 1.00012 0.98980 0.97961 1.20816 0.81056 0.81386 0.86099 1.90652 1.60100 1.66502 1.25223 1.47951 1.44714 1.17275 1.21399 1.20272 0.83531 0.95240 0.96326 1.20368 0.96348 0.97959 0.95868 1.21138 0.94077 0.96921 0.99693 1.21073 0.95534 1.00638 0.97594 1.21113 0.99596 0.97892 0.95472 1.21148 0.94630 0.98606 0.99738 1.21263 0.95140 0.98891 0.95931 0.93075 0.93410 0.93034 0.92422 0.92273 0.92295 0.92851 0.87722 0.92973 0.91873 0.90050 0.88653 0.88361 0.88019 0.88039 0.89988 0.86023 0.86515 0.86569 0.86160 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.88 5.93 -26.73 -0.16 -2.04 16 3 C -0.13 -2.39 5.51 -26.73 -0.15 -2.54 16 4 C 0.12 2.52 4.91 -4.04 -0.02 2.50 16 5 N -0.43 -9.50 2.54 -114.81 -0.29 -9.79 16 6 C -0.35 -7.70 8.23 -14.93 -0.12 -7.82 16 7 H 0.09 1.89 6.61 -52.49 -0.35 1.55 16 8 C 0.05 1.13 4.93 -17.47 -0.09 1.04 16 9 N -0.85 -20.23 11.42 55.50 0.63 -19.60 16 10 Si 0.91 17.66 29.60 -169.99 -5.03 12.63 16 11 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 12 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 13 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 14 C 0.46 10.00 6.10 -10.98 -0.07 9.94 16 15 O -0.59 -14.29 14.69 5.55 0.08 -14.20 16 16 C 0.12 2.30 2.81 -68.16 -0.19 2.11 16 17 H 0.11 2.00 7.05 -51.93 -0.37 1.64 16 18 C -0.11 -1.74 6.45 -25.10 -0.16 -1.91 16 19 C -0.15 -2.16 6.86 -26.75 -0.18 -2.34 16 20 C 0.52 9.42 8.02 -10.86 -0.09 9.33 16 21 O -0.55 -11.23 17.63 5.55 0.10 -11.14 16 22 N -0.58 -10.79 2.57 -167.56 -0.43 -11.22 16 23 C 0.17 3.09 5.51 -5.19 -0.03 3.06 16 24 C -0.10 -1.78 5.46 -104.63 -0.57 -2.36 16 25 C -0.10 -1.58 9.68 -39.58 -0.38 -1.96 16 26 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 27 C -0.12 -1.66 10.05 -39.59 -0.40 -2.06 16 28 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 29 C -0.09 -1.60 9.72 -39.58 -0.38 -1.98 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.10 2.42 5.46 -51.93 -0.28 2.14 16 38 H 0.05 1.20 7.56 -51.93 -0.39 0.81 16 39 H 0.27 6.13 8.31 -40.82 -0.34 5.80 16 40 H 0.08 1.29 7.91 -51.92 -0.41 0.88 16 41 H 0.09 1.27 7.74 -51.93 -0.40 0.87 16 42 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.10 2.05 6.21 -51.93 -0.32 1.72 16 45 H 0.08 1.49 7.89 -51.93 -0.41 1.08 16 46 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 47 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 48 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 49 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 50 H 0.13 2.41 8.06 -52.48 -0.42 1.99 16 LS Contribution 408.28 15.07 6.15 6.15 Total: -1.00 -27.50 408.28 -10.20 -37.70 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -7.99 Total: 12.55 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -3.42 Total: -3.08 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: -0.09 Total: -40.61 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: 0.18 Total: -25.34 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -27.50 -10.20 -37.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181449642.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.917 kcal (2) G-P(sol) polarization free energy of solvation -27.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds