Wall clock time and date at job start Wed Apr 1 2020 03:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46799 * 2 1 4 4 C 1.53010 * 109.46992 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46790 * 180.02562 * 4 3 2 6 6 C 1.37105 * 119.99784 * 94.47263 * 5 4 3 7 7 H 1.07994 * 119.99278 * 216.07761 * 6 5 4 8 8 C 1.38945 * 120.00156 * 36.07472 * 6 5 4 9 9 N 1.31409 * 119.99881 * 21.37200 * 8 6 5 10 10 Si 1.86799 * 120.00263 * 201.36373 * 8 6 5 11 11 H 1.48508 * 109.46806 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46888 * 119.99766 * 10 8 6 13 13 H 1.48489 * 109.47576 * 240.00507 * 10 8 6 14 14 C 1.34775 * 119.99758 * 274.46597 * 5 4 3 15 15 O 1.21292 * 120.00425 * 0.02562 * 14 5 4 16 16 C 1.50705 * 119.99556 * 180.02562 * 14 5 4 17 17 H 1.08995 * 110.21588 * 33.68045 * 16 14 5 18 18 C 1.54477 * 110.24863 * 271.74810 * 16 14 5 19 19 C 1.54620 * 101.76888 * 215.58659 * 18 16 14 20 20 C 1.51283 * 104.19393 * 24.79730 * 19 18 16 21 21 O 1.21289 * 124.94376 * 163.71655 * 20 19 18 22 22 N 1.34417 * 110.11542 * 343.74599 * 20 19 18 23 23 C 1.46504 * 124.34835 * 179.59168 * 22 20 19 24 24 C 1.50696 * 109.47159 * 87.45356 * 23 22 20 25 25 C 1.38233 * 120.00181 * 264.34612 * 24 23 22 26 26 C 1.38240 * 120.00298 * 179.76613 * 25 24 23 27 27 C 1.38233 * 119.99595 * 0.50548 * 26 25 24 28 28 C 1.38232 * 120.00273 * 359.74576 * 27 26 25 29 29 C 1.38236 * 119.99888 * 0.02562 * 28 27 26 30 30 H 1.08995 * 109.47218 * 60.00264 * 1 2 3 31 31 H 1.09004 * 109.46775 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47258 * 299.99711 * 1 2 3 33 33 H 1.08994 * 109.47258 * 240.00289 * 2 1 3 34 34 H 1.08995 * 109.47218 * 119.99736 * 2 1 3 35 35 H 1.09005 * 109.47421 * 60.00233 * 3 2 1 36 36 H 1.08992 * 109.47491 * 299.99666 * 3 2 1 37 37 H 1.09001 * 109.46672 * 300.00232 * 4 3 2 38 38 H 1.08996 * 109.46571 * 60.00133 * 4 3 2 39 39 H 0.97006 * 120.00285 * 180.02562 * 9 8 6 40 40 H 1.09008 * 110.96996 * 333.70620 * 18 16 14 41 41 H 1.09003 * 110.96652 * 97.42603 * 18 16 14 42 42 H 1.08993 * 110.49102 * 143.47388 * 19 18 16 43 43 H 1.08997 * 110.48626 * 266.12255 * 19 18 16 44 44 H 1.09002 * 109.47101 * 207.44939 * 23 22 20 45 45 H 1.08995 * 109.47043 * 327.44942 * 23 22 20 46 46 H 1.08001 * 119.99970 * 359.97438 * 25 24 23 47 47 H 1.07999 * 120.00017 * 180.22986 * 26 25 24 48 48 H 1.08004 * 120.00060 * 179.72957 * 27 26 25 49 49 H 1.08006 * 120.00195 * 179.97438 * 28 27 26 50 50 H 1.08003 * 120.00078 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8239 0.0013 6 6 4.3735 3.4389 1.1854 7 1 4.1704 4.4913 1.3179 8 6 4.9541 2.7083 2.2147 9 7 5.5797 1.5834 1.9503 10 14 4.8457 3.3253 3.9746 11 1 4.0939 4.6057 4.0047 12 1 4.1420 2.3189 4.8095 13 1 6.2143 3.5418 4.5085 14 6 4.1976 3.4898 -1.1622 15 8 3.9184 2.9458 -2.2096 16 6 4.7004 4.9105 -1.1615 17 1 5.4214 5.0545 -0.3569 18 6 3.5204 5.8951 -1.0045 19 6 3.9744 7.0757 -1.8937 20 6 4.9245 6.4467 -2.8889 21 8 5.2851 6.9615 -3.9262 22 7 5.3105 5.2339 -2.4565 23 6 6.2229 4.3486 -3.1846 24 6 7.6456 4.6776 -2.8125 25 6 8.3882 5.5310 -3.6070 26 6 9.6917 5.8367 -3.2631 27 6 10.2561 5.2807 -2.1303 28 6 9.5153 4.4233 -1.3386 29 6 8.2103 4.1213 -1.6799 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 3.9329 0.9289 0.8909 38 1 3.9337 0.9287 -0.8891 39 1 5.9847 1.0730 2.6690 40 1 2.5949 5.4578 -1.3793 41 1 3.4092 6.2082 0.0337 42 1 3.1205 7.5166 -2.4079 43 1 4.4905 7.8270 -1.2961 44 1 6.0094 3.3122 -2.9230 45 1 6.0861 4.4882 -4.2568 46 1 7.9488 5.9616 -4.4947 47 1 10.2706 6.5063 -3.8819 48 1 11.2760 5.5161 -1.8639 49 1 9.9565 3.9886 -0.4537 50 1 7.6316 3.4511 -1.0616 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181449642.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:52 Heat of formation + Delta-G solvation = -62.403208 kcal Electronic energy + Delta-G solvation = -31538.037237 eV Core-core repulsion = 27529.221841 eV Total energy + Delta-G solvation = -4008.815397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.92614 -40.19619 -39.85534 -37.56789 -36.73658 -35.57382 -34.68101 -33.39525 -31.82769 -31.52186 -30.56747 -28.63796 -27.17155 -26.77684 -24.60298 -23.61176 -23.02674 -22.50303 -21.99200 -21.12051 -20.39270 -18.93694 -18.32966 -17.71110 -17.38944 -16.98756 -16.55332 -16.45234 -16.11610 -16.09809 -15.83172 -15.61790 -15.45023 -14.70505 -14.59035 -14.50280 -14.37111 -14.30708 -13.83704 -13.78538 -13.70547 -13.53111 -13.33500 -13.10089 -13.05824 -12.89772 -12.68266 -12.60338 -12.18817 -12.11550 -12.05227 -11.95256 -11.94229 -11.90102 -11.78170 -11.41732 -11.00399 -10.89684 -10.56200 -9.87048 -9.77536 -9.66976 -9.40789 -8.28541 -6.03183 0.30537 0.45270 1.41784 1.52739 1.54518 1.63632 1.84120 2.13260 2.33402 2.86019 2.96803 3.08801 3.37185 3.61967 3.80548 3.86234 3.97780 4.09186 4.10027 4.13690 4.20553 4.25206 4.26539 4.30791 4.41381 4.52783 4.58568 4.60948 4.69444 4.72142 4.78825 4.85655 4.88818 4.98165 5.00174 5.03782 5.05840 5.10011 5.11209 5.18886 5.36645 5.39030 5.44045 5.49342 5.52494 5.56597 5.58883 5.65396 6.01236 6.06455 6.15834 6.43670 7.09678 7.14883 7.57904 8.01113 8.73193 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009477 B = 0.004236 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.857283 B = 6607.722411 C = 7704.626701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.114 4.114 4 C 0.119 3.881 5 N -0.436 5.436 6 C -0.355 4.355 7 H 0.108 0.892 8 C 0.011 3.989 9 N -0.885 5.885 10 Si 0.972 3.028 11 H -0.250 1.250 12 H -0.282 1.282 13 H -0.285 1.285 14 C 0.454 3.546 15 O -0.627 6.627 16 C 0.129 3.871 17 H 0.100 0.900 18 C -0.107 4.107 19 C -0.137 4.137 20 C 0.507 3.493 21 O -0.575 6.575 22 N -0.588 5.588 23 C 0.172 3.828 24 C -0.116 4.116 25 C -0.110 4.110 26 C -0.123 4.123 27 C -0.113 4.113 28 C -0.126 4.126 29 C -0.113 4.113 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.039 0.961 37 H 0.091 0.909 38 H 0.025 0.975 39 H 0.271 0.729 40 H 0.074 0.926 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.132 0.868 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.119 0.881 47 H 0.150 0.850 48 H 0.154 0.846 49 H 0.135 0.865 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.814 6.157 0.231 6.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C -0.152 4.152 4 C -0.005 4.005 5 N -0.153 5.153 6 C -0.482 4.482 7 H 0.125 0.875 8 C -0.193 4.193 9 N -0.521 5.521 10 Si 0.796 3.204 11 H -0.173 1.173 12 H -0.208 1.208 13 H -0.211 1.211 14 C 0.243 3.757 15 O -0.515 6.515 16 C 0.022 3.978 17 H 0.118 0.882 18 C -0.145 4.145 19 C -0.177 4.177 20 C 0.297 3.703 21 O -0.455 6.455 22 N -0.319 5.319 23 C 0.050 3.950 24 C -0.117 4.117 25 C -0.129 4.129 26 C -0.140 4.140 27 C -0.131 4.131 28 C -0.144 4.144 29 C -0.131 4.131 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.109 0.891 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.150 0.850 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.137 0.863 47 H 0.168 0.832 48 H 0.172 0.828 49 H 0.153 0.847 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.991 5.916 -0.723 6.042 hybrid contribution 0.111 -0.633 0.724 0.968 sum 1.102 5.283 0.002 5.396 Atomic orbital electron populations 1.21706 0.94166 1.02265 1.01833 1.21410 0.97115 0.95446 1.01515 1.21756 0.95319 0.97576 1.00564 1.21348 0.93237 0.84573 1.01332 1.43665 1.54557 1.11929 1.05114 1.19838 1.41050 0.96958 0.90346 0.87480 1.26097 0.93256 0.96287 1.03649 1.70053 1.30835 1.16949 1.34293 0.85193 0.77915 0.79285 0.78010 1.17297 1.20794 1.21118 1.20808 0.81862 0.89509 0.83564 1.90523 1.57232 1.71037 1.32679 1.21509 0.97218 0.93494 0.85554 0.88225 1.22534 0.95691 0.93119 1.03148 1.22378 0.99823 0.98660 0.96796 1.21586 0.81219 0.81086 0.86388 1.90628 1.61272 1.67048 1.26598 1.48108 1.44699 1.17638 1.21415 1.20087 0.85074 0.93893 0.95953 1.20215 0.95608 0.99260 0.96615 1.21200 0.95169 0.96993 0.99522 1.21452 0.94601 1.00194 0.97785 1.21505 1.00930 0.96212 0.94414 1.21369 0.93675 0.98815 1.00536 1.21074 0.96316 0.99590 0.96158 0.93048 0.91307 0.92348 0.92846 0.92058 0.92186 0.94217 0.89076 0.95641 0.91919 0.90773 0.85964 0.86035 0.85048 0.91014 0.90633 0.86305 0.83240 0.82813 0.84729 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.12 -3.70 5.93 30.60 0.18 -3.52 16 3 C -0.11 -4.37 5.51 30.60 0.17 -4.20 16 4 C 0.12 5.43 4.91 86.38 0.42 5.86 16 5 N -0.44 -20.12 2.54 -635.52 -1.61 -21.74 16 6 C -0.35 -15.81 8.23 84.04 0.69 -15.12 16 7 H 0.11 4.33 6.61 -2.91 -0.02 4.31 16 8 C 0.01 0.52 4.93 84.93 0.42 0.93 16 9 N -0.88 -43.41 11.42 21.66 0.25 -43.16 16 10 Si 0.97 35.64 29.60 68.60 2.03 37.67 16 11 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 12 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 13 H -0.29 -10.61 7.11 99.48 0.71 -9.91 16 14 C 0.45 20.60 6.10 87.66 0.54 21.13 16 15 O -0.63 -32.02 14.69 -3.07 -0.05 -32.06 16 16 C 0.13 4.84 2.81 44.70 0.13 4.96 16 17 H 0.10 3.84 7.05 -2.39 -0.02 3.83 16 18 C -0.11 -3.06 6.45 31.65 0.20 -2.86 16 19 C -0.14 -3.52 6.86 30.58 0.21 -3.31 16 20 C 0.51 18.26 8.02 87.90 0.71 18.96 16 21 O -0.57 -23.62 17.63 -3.06 -0.05 -23.67 16 22 N -0.59 -22.45 2.57 -802.63 -2.07 -24.52 16 23 C 0.17 6.80 5.51 85.63 0.47 7.27 16 24 C -0.12 -4.14 5.46 -19.87 -0.11 -4.24 16 25 C -0.11 -3.47 9.68 22.27 0.22 -3.25 16 26 C -0.12 -3.11 10.05 22.27 0.22 -2.89 16 27 C -0.11 -2.73 10.05 22.27 0.22 -2.51 16 28 C -0.13 -3.68 10.05 22.27 0.22 -3.45 16 29 C -0.11 -4.02 9.72 22.27 0.22 -3.80 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.09 4.43 5.46 -2.39 -0.01 4.42 16 38 H 0.03 1.26 7.56 -2.39 -0.02 1.24 16 39 H 0.27 12.63 8.31 -92.70 -0.77 11.86 16 40 H 0.07 2.26 7.91 -2.38 -0.02 2.24 16 41 H 0.12 2.87 7.74 -2.39 -0.02 2.85 16 42 H 0.12 2.63 8.14 -2.39 -0.02 2.62 16 43 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.07 3.21 6.21 -2.39 -0.01 3.19 16 45 H 0.08 2.98 7.89 -2.39 -0.02 2.96 16 46 H 0.12 3.76 8.06 -2.91 -0.02 3.73 16 47 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 48 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 49 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 50 H 0.10 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -62.84 408.28 5.26 -57.58 By element: Atomic # 1 Polarization: 41.91 SS G_CDS: 0.92 Total: 42.83 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 5.84 Total: 7.08 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -3.43 Total: -89.42 kcal Atomic # 8 Polarization: -55.63 SS G_CDS: -0.10 Total: -55.73 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.67 kcal Total: -62.84 5.26 -57.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181449642.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.827 kcal (2) G-P(sol) polarization free energy of solvation -62.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds