Wall clock time and date at job start Wed Apr 1 2020 03:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99821 * 2 1 4 4 C 1.53006 * 109.46684 * 125.00270 * 3 2 1 5 5 C 1.50707 * 109.46737 * 179.97438 * 4 3 2 6 6 O 1.21274 * 120.00037 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99929 * 179.97438 * 5 4 3 8 8 C 1.47025 * 125.64740 * 359.96061 * 7 5 4 9 9 C 1.54322 * 107.27212 * 181.09019 * 8 7 5 10 10 C 1.55157 * 102.93870 * 22.19762 * 9 8 7 11 11 H 1.09004 * 111.03893 * 82.58361 * 10 9 8 12 12 N 1.46900 * 111.00429 * 206.41992 * 10 9 8 13 13 C 1.46899 * 111.00116 * 267.19679 * 12 10 9 14 14 C 1.50706 * 109.47085 * 179.97438 * 13 12 10 15 15 C 1.38302 * 119.93027 * 269.72877 * 14 13 12 16 16 C 1.38094 * 120.06553 * 179.72884 * 15 14 13 17 17 C 1.38875 * 119.93405 * 0.56562 * 16 15 14 18 18 O 1.35750 * 120.07481 * 179.68359 * 17 16 15 19 19 C 1.34828 * 117.00620 * 174.48597 * 18 17 16 20 20 H 1.08004 * 119.99496 * 5.06274 * 19 18 17 21 21 C 1.38650 * 120.00377 * 185.05980 * 19 18 17 22 22 N 1.31557 * 119.99745 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00079 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46815 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46822 * 120.00206 * 23 21 19 26 26 H 1.48503 * 109.46817 * 240.00212 * 23 21 19 27 27 C 1.38878 * 119.86071 * 359.70302 * 17 16 15 28 28 C 1.38102 * 119.93084 * 0.02562 * 27 17 16 29 29 C 1.47419 * 125.64752 * 180.02562 * 7 5 4 30 30 H 1.08003 * 119.99520 * 179.97438 * 1 2 3 31 31 H 1.07992 * 119.99662 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.00169 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47447 * 5.00713 * 3 2 1 34 34 H 1.08999 * 109.47507 * 244.99981 * 3 2 1 35 35 H 1.08995 * 109.47463 * 60.00445 * 4 3 2 36 36 H 1.08992 * 109.47260 * 299.99903 * 4 3 2 37 37 H 1.08997 * 109.88429 * 300.51206 * 8 7 5 38 38 H 1.09009 * 109.88079 * 61.52213 * 8 7 5 39 39 H 1.08995 * 110.72393 * 263.83578 * 9 8 7 40 40 H 1.08999 * 110.71736 * 140.55859 * 9 8 7 41 41 H 1.00900 * 111.00111 * 143.24254 * 12 10 9 42 42 H 1.09001 * 109.47496 * 299.99536 * 13 12 10 43 43 H 1.09001 * 109.47345 * 60.00208 * 13 12 10 44 44 H 1.08001 * 119.96271 * 359.97438 * 15 14 13 45 45 H 1.08007 * 120.03471 * 180.27361 * 16 15 14 46 46 H 0.97001 * 119.99573 * 180.02562 * 22 21 19 47 47 H 1.08000 * 120.03837 * 180.02562 * 27 17 16 48 48 H 1.08002 * 119.96674 * 179.97438 * 28 27 17 49 49 H 1.08997 * 110.36929 * 36.99868 * 29 7 5 50 50 H 1.09000 * 110.37014 * 274.67125 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7890 2.6379 1.1813 6 8 3.5704 3.4643 0.3211 7 7 4.7055 2.8869 2.1376 8 6 5.0664 1.9785 3.2359 9 6 6.1325 2.6948 4.0914 10 6 5.9009 4.1913 3.7537 11 1 5.0868 4.6053 4.3487 12 7 7.1330 4.9696 3.9385 13 6 7.1950 5.5445 5.2890 14 6 8.4700 6.3334 5.4411 15 6 9.6139 5.7127 5.9089 16 6 10.7852 6.4316 6.0441 17 6 10.8107 7.7820 5.7208 18 8 11.9589 8.4929 5.8587 19 6 11.9458 9.7680 5.4206 20 1 11.0268 10.2053 5.0592 21 6 13.1121 10.5177 5.4340 22 7 14.2316 9.9847 5.8739 23 14 13.0938 12.2845 4.8276 24 1 11.7210 12.6432 4.3894 25 1 13.5143 13.1896 5.9273 26 1 14.0314 12.4252 3.6847 27 6 9.6589 8.4037 5.2566 28 6 8.4921 7.6781 5.1183 29 6 5.5111 4.1158 2.2565 30 1 -0.5399 -0.9354 -0.0004 31 1 -0.5399 0.9353 0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0897 34 1 2.6213 1.4027 -0.9313 35 1 3.7401 0.5066 1.0920 36 1 2.4774 1.2355 2.1130 37 1 4.1872 1.7632 3.8430 38 1 5.4737 1.0516 2.8316 39 1 7.1351 2.3839 3.7980 40 1 5.9647 2.5083 5.1522 41 1 7.2156 5.6885 3.2354 42 1 6.3397 6.2023 5.4434 43 1 7.1743 4.7423 6.0267 44 1 9.5921 4.6637 6.1650 45 1 11.6794 5.9453 6.4053 46 1 15.0474 10.5094 5.8836 47 1 9.6756 9.4537 5.0040 48 1 7.5959 8.1611 4.7577 49 1 4.9190 4.9863 1.9742 50 1 6.4040 4.0457 1.6354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181511018.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:07 Heat of formation + Delta-G solvation = -40.527978 kcal Electronic energy + Delta-G solvation = -28100.981499 eV Core-core repulsion = 24093.114683 eV Total energy + Delta-G solvation = -4007.866816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.18615 -40.76018 -39.15677 -38.33064 -36.28391 -35.90484 -34.28486 -32.54452 -31.76018 -31.42546 -30.73899 -29.02478 -27.44420 -25.85120 -24.89764 -23.79143 -23.56925 -21.94407 -21.57607 -20.66690 -20.12198 -19.82771 -18.85170 -18.10994 -17.61748 -16.90693 -16.64733 -16.37415 -16.28661 -16.12206 -15.71255 -15.57243 -15.42745 -15.18578 -14.72593 -14.64391 -14.45656 -14.30710 -14.02190 -13.99184 -13.74547 -13.57170 -13.36615 -13.07278 -13.01727 -12.97649 -12.66414 -12.42743 -12.29825 -12.12546 -12.10255 -12.04011 -11.89497 -11.88964 -11.65186 -11.15815 -10.98101 -10.80064 -10.21804 -9.75163 -9.70348 -9.39542 -8.89186 -8.47331 -6.15322 0.63242 0.69275 1.34487 1.38839 1.42567 1.52499 1.57984 1.94708 2.17191 2.79812 3.10802 3.34181 3.45445 3.54738 3.71159 3.78315 3.97088 4.06233 4.09151 4.12492 4.16700 4.24093 4.32903 4.35614 4.41587 4.46674 4.50936 4.60250 4.64195 4.71358 4.75974 4.82546 4.84739 4.89552 4.93824 5.07883 5.10196 5.12200 5.16418 5.18976 5.25035 5.33146 5.34453 5.60240 5.73701 5.76532 5.82996 5.91259 6.03809 6.09843 6.27389 6.38011 6.48936 6.97826 7.10040 7.79421 8.76220 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025710 B = 0.001479 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.828670 B =18931.169424 C =19622.631707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.157 4.157 3 C -0.080 4.080 4 C -0.120 4.120 5 C 0.518 3.482 6 O -0.593 6.593 7 N -0.619 5.619 8 C 0.099 3.901 9 C -0.117 4.117 10 C 0.079 3.921 11 H 0.068 0.932 12 N -0.679 5.679 13 C 0.125 3.875 14 C -0.158 4.158 15 C -0.044 4.044 16 C -0.207 4.207 17 C 0.113 3.887 18 O -0.235 6.235 19 C -0.413 4.413 20 H 0.101 0.899 21 C -0.022 4.022 22 N -0.921 5.921 23 Si 1.017 2.983 24 H -0.252 1.252 25 H -0.268 1.268 26 H -0.269 1.269 27 C -0.245 4.245 28 C -0.063 4.063 29 C 0.102 3.898 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.343 0.657 42 H 0.045 0.955 43 H 0.093 0.907 44 H 0.149 0.851 45 H 0.111 0.889 46 H 0.272 0.728 47 H 0.115 0.885 48 H 0.136 0.864 49 H 0.060 0.940 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.013 -21.221 -5.279 33.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.175 4.175 3 C -0.118 4.118 4 C -0.159 4.159 5 C 0.309 3.691 6 O -0.474 6.474 7 N -0.352 5.352 8 C -0.023 4.023 9 C -0.155 4.155 10 C -0.032 4.032 11 H 0.086 0.914 12 N -0.311 5.311 13 C -0.003 4.003 14 C -0.159 4.159 15 C -0.062 4.062 16 C -0.226 4.226 17 C 0.062 3.938 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.118 0.882 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.176 1.176 25 H -0.193 1.193 26 H -0.194 1.194 27 C -0.264 4.264 28 C -0.082 4.082 29 C -0.022 4.022 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.145 0.855 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.162 0.838 42 H 0.063 0.937 43 H 0.111 0.889 44 H 0.166 0.834 45 H 0.129 0.871 46 H 0.081 0.919 47 H 0.132 0.868 48 H 0.154 0.846 49 H 0.079 0.921 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.394 -21.377 -5.485 33.644 hybrid contribution 0.136 2.030 -0.410 2.076 sum -25.258 -19.347 -5.895 32.358 Atomic orbital electron populations 1.24048 0.96133 1.02437 1.00604 1.22981 0.96122 0.98043 1.00332 1.20464 0.97648 0.95862 0.97787 1.21614 0.98863 0.93699 1.01716 1.21161 0.78696 0.89854 0.79397 1.90699 1.67410 1.50338 1.38962 1.48554 1.38808 1.19262 1.28592 1.22345 0.99283 0.93310 0.87406 1.22700 0.99289 0.92568 1.00943 1.22653 0.91041 0.95798 0.93694 0.91380 1.60561 1.36094 1.29930 1.04481 1.20668 0.92227 0.96576 0.90790 1.19625 0.96481 0.93538 1.06272 1.20871 0.90267 0.99494 0.95611 1.20494 1.00394 0.91337 1.10377 1.19979 0.86915 0.92511 0.94349 1.83938 1.31564 1.25603 1.73034 1.21843 0.97782 0.85803 1.43463 0.88220 1.26557 0.93433 1.05076 0.96890 1.70189 1.00577 1.39310 1.45821 0.84548 0.79500 0.74139 0.78135 1.17569 1.19262 1.19381 1.21219 0.93913 1.01017 1.10283 1.20954 0.96350 0.94057 0.96807 1.22265 0.94928 0.87893 0.97065 0.87053 0.89049 0.85545 0.92499 0.91772 0.86315 0.86631 0.88994 0.89287 0.90049 0.88268 0.83843 0.93723 0.88918 0.83371 0.87076 0.91866 0.86754 0.84635 0.92130 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.79 14.32 67.78 0.97 -0.82 16 2 C -0.16 -1.45 9.52 25.64 0.24 -1.21 16 3 C -0.08 -1.05 4.95 29.85 0.15 -0.90 16 4 C -0.12 -1.21 4.87 29.85 0.15 -1.06 16 5 C 0.52 9.71 7.85 87.66 0.69 10.40 16 6 O -0.59 -16.95 16.24 -3.01 -0.05 -17.00 16 7 N -0.62 -9.52 3.33 -811.83 -2.70 -12.22 16 8 C 0.10 0.77 6.49 86.73 0.56 1.34 16 9 C -0.12 -1.15 6.65 31.78 0.21 -0.94 16 10 C 0.08 1.10 3.38 46.30 0.16 1.26 16 11 H 0.07 0.91 7.83 -2.38 -0.02 0.89 16 12 N -0.68 -12.39 6.40 -488.41 -3.13 -15.52 16 13 C 0.13 2.42 5.67 85.56 0.49 2.91 16 14 C -0.16 -4.52 5.40 -19.83 -0.11 -4.62 16 15 C -0.04 -1.40 9.69 22.25 0.22 -1.19 16 16 C -0.21 -8.68 9.99 22.39 0.22 -8.45 16 17 C 0.11 5.61 6.65 22.58 0.15 5.76 16 18 O -0.23 -14.25 9.76 -22.72 -0.22 -14.47 16 19 C -0.41 -24.25 9.49 67.92 0.64 -23.61 16 20 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 21 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 22 N -0.92 -56.86 13.67 21.61 0.30 -56.56 16 23 Si 1.02 43.22 29.55 68.60 2.03 45.25 16 24 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 C -0.25 -10.57 9.17 22.39 0.21 -10.37 16 28 C -0.06 -2.07 9.69 22.25 0.22 -1.86 16 29 C 0.10 1.81 6.31 86.85 0.55 2.36 16 30 H 0.11 0.70 8.06 -2.91 -0.02 0.68 16 31 H 0.09 0.91 7.84 -2.91 -0.02 0.89 16 32 H 0.13 0.74 8.06 -2.91 -0.02 0.71 16 33 H 0.06 0.93 7.75 -2.39 -0.02 0.91 16 34 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 35 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.34 6.81 8.43 -89.69 -0.76 6.06 16 42 H 0.04 0.78 8.03 -2.39 -0.02 0.76 16 43 H 0.09 1.51 8.08 -2.39 -0.02 1.49 16 44 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 45 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 46 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 47 H 0.11 5.09 5.64 -2.91 -0.02 5.07 16 48 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 49 H 0.06 1.26 8.04 -2.39 -0.02 1.24 16 50 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -78.03 416.37 2.57 -75.46 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.17 Total: 26.85 kcal Atomic # 6 Polarization: -37.97 SS G_CDS: 6.17 Total: -31.80 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -5.53 Total: -84.30 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.27 Total: -31.47 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -78.03 2.57 -75.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181511018.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.936 kcal (2) G-P(sol) polarization free energy of solvation -78.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds