Wall clock time and date at job start Wed Apr 1 2020 05:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46986 * 2 1 4 4 C 1.52998 * 109.46852 * 239.99764 * 2 1 3 5 5 O 1.45198 * 109.46481 * 119.99918 * 2 1 3 6 6 C 1.34637 * 117.00277 * 60.00059 * 5 2 1 7 7 O 1.21509 * 119.99812 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00026 * 179.97438 * 6 5 2 9 9 C 1.46507 * 120.00260 * 174.98404 * 8 6 5 10 10 C 1.50694 * 112.84716 * 297.98655 * 9 8 6 11 11 O 1.21287 * 119.99919 * 145.32316 * 10 9 8 12 12 N 1.34772 * 120.00379 * 325.32338 * 10 9 8 13 13 C 1.46501 * 120.00577 * 175.08748 * 12 10 9 14 14 C 1.53004 * 109.47373 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.46969 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47135 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99970 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00105 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99886 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99736 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47081 * 89.99900 * 20 18 16 22 22 H 1.48501 * 109.46711 * 209.99803 * 20 18 16 23 23 H 1.48498 * 109.47184 * 329.99754 * 20 18 16 24 24 C 1.53782 * 113.60936 * 69.18079 * 9 8 6 25 25 C 1.53950 * 87.01988 * 89.23245 * 24 9 8 26 26 F 1.39894 * 113.53600 * 270.80729 * 25 24 9 27 27 C 1.53777 * 87.11329 * 25.36021 * 25 24 9 28 28 H 1.09002 * 109.47192 * 300.00565 * 1 2 3 29 29 H 1.08998 * 109.47054 * 59.99900 * 1 2 3 30 30 H 1.08996 * 109.47286 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46665 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47242 * 299.99451 * 3 2 1 33 33 H 1.09002 * 109.47556 * 60.00249 * 3 2 1 34 34 H 1.09006 * 109.47425 * 300.00267 * 4 2 1 35 35 H 1.08998 * 109.47017 * 60.00313 * 4 2 1 36 36 H 1.08998 * 109.46974 * 180.02562 * 4 2 1 37 37 H 0.96996 * 120.00331 * 354.98761 * 8 6 5 38 38 H 0.97003 * 120.00070 * 355.08458 * 12 10 9 39 39 H 1.08995 * 109.47191 * 59.99610 * 13 12 10 40 40 H 1.09001 * 109.46682 * 299.99994 * 13 12 10 41 41 H 1.08996 * 109.46925 * 300.00013 * 14 13 12 42 42 H 1.08999 * 109.46811 * 59.99664 * 14 13 12 43 43 H 1.08996 * 109.47488 * 299.99889 * 15 14 13 44 44 H 1.09007 * 109.47519 * 59.99972 * 15 14 13 45 45 H 0.97002 * 119.99935 * 180.02562 * 19 18 16 46 46 H 1.09003 * 113.60772 * 203.75331 * 24 9 8 47 47 H 1.08998 * 113.61440 * 334.64983 * 24 9 8 48 48 H 1.09004 * 113.66711 * 139.92889 * 25 24 9 49 49 H 1.09000 * 113.61812 * 220.09423 * 27 25 24 50 50 H 1.09003 * 113.69431 * 89.19812 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5041 8 7 2.0678 -2.6656 2.4167 9 6 1.5859 -4.0310 2.6402 10 6 0.0928 -4.1006 2.8313 11 8 -0.5279 -5.0564 2.4161 12 7 -0.5530 -3.1009 3.4637 13 6 -2.0151 -3.1156 3.5552 14 6 -2.4910 -1.8765 4.3161 15 6 -4.0180 -1.8915 4.4111 16 6 -4.4867 -0.6714 5.1611 17 1 -3.7675 0.0436 5.5325 18 6 -5.8338 -0.4678 5.3731 19 7 -6.7097 -1.3381 4.9204 20 14 -6.4148 1.0451 6.3022 21 1 -6.6514 2.1543 5.3434 22 1 -7.6777 0.7317 7.0179 23 1 -5.3774 1.4520 7.2837 24 6 2.1247 -5.0488 1.6210 25 6 3.3128 -5.2569 2.5776 26 9 4.3800 -4.3839 2.3410 27 6 2.3805 -4.7972 3.7108 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 2.6859 -2.2607 3.0450 38 1 -0.0498 -2.3716 3.8584 39 1 -2.3371 -4.0129 4.0837 40 1 -2.4419 -3.1118 2.5522 41 1 -2.0642 -1.8798 5.3190 42 1 -2.1690 -0.9794 3.7872 43 1 -4.4445 -1.8880 3.4080 44 1 -4.3404 -2.7886 4.9397 45 1 -7.6574 -1.1946 5.0693 46 1 1.4939 -5.9308 1.5097 47 1 2.4044 -4.6041 0.6660 48 1 3.6269 -6.2970 2.6654 49 1 2.8666 -4.1497 4.4406 50 1 1.8194 -5.6095 4.1731 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186910173.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:48 Heat of formation + Delta-G solvation = -158.759480 kcal Electronic energy + Delta-G solvation = -32028.547576 eV Core-core repulsion = 27584.784633 eV Total energy + Delta-G solvation = -4443.762943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.02906 -41.30609 -40.10712 -37.93831 -36.74954 -35.42038 -34.45176 -33.46410 -32.94402 -31.17853 -27.58811 -27.46983 -27.43222 -26.45425 -25.78395 -23.29875 -22.74364 -21.10801 -20.60613 -20.27931 -19.36579 -18.44102 -17.92144 -16.81553 -16.45126 -16.25338 -16.17408 -16.07757 -15.63167 -15.23307 -15.01651 -14.74744 -14.53601 -14.47015 -14.41690 -13.73848 -13.65999 -13.51940 -12.96864 -12.65687 -12.51843 -12.34832 -12.26810 -12.09452 -12.02826 -12.00636 -11.82733 -11.71064 -11.59815 -11.45141 -11.24512 -10.91583 -10.88840 -10.75083 -10.61316 -10.52314 -10.28561 -10.13616 -9.88414 -9.58443 -9.20900 -9.05627 -8.79874 -8.38159 -6.02630 -4.05780 1.79278 2.55942 2.65289 3.29134 3.29910 3.36350 3.39250 3.65183 3.76812 3.84892 4.15542 4.33362 4.43065 4.51406 4.55522 4.60625 4.75158 4.92805 5.12188 5.20947 5.29986 5.32357 5.33129 5.38950 5.44803 5.52010 5.60101 5.66348 5.68671 5.69901 5.75380 5.76457 5.84576 6.03985 6.14542 6.15271 6.30744 6.35371 6.45592 6.58357 6.80234 6.98451 7.12171 7.62360 7.64414 7.74975 7.95914 8.19106 8.29714 8.37564 9.00710 9.58363 11.08662 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010124 B = 0.003046 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.951969 B = 9190.314384 C =11082.922653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.138 3.862 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.654 3.346 7 O -0.549 6.549 8 N -0.692 5.692 9 C 0.146 3.854 10 C 0.524 3.476 11 O -0.531 6.531 12 N -0.717 5.717 13 C 0.117 3.883 14 C -0.119 4.119 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.142 4.142 25 C 0.065 3.935 26 F -0.193 7.193 27 C -0.146 4.146 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.411 0.589 38 H 0.396 0.604 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.261 0.739 46 H 0.125 0.875 47 H 0.094 0.906 48 H 0.108 0.892 49 H 0.097 0.903 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.944 -2.479 -7.258 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.101 3.899 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.408 3.592 7 O -0.436 6.436 8 N -0.354 5.354 9 C 0.056 3.944 10 C 0.307 3.693 11 O -0.406 6.406 12 N -0.366 5.366 13 C -0.006 4.006 14 C -0.157 4.157 15 C -0.013 4.013 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.180 4.180 25 C 0.029 3.971 26 F -0.174 7.174 27 C -0.184 4.184 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.248 0.752 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.143 0.857 47 H 0.112 0.888 48 H 0.126 0.874 49 H 0.116 0.884 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 23.907 -3.351 -8.060 25.451 hybrid contribution 0.055 1.617 0.905 1.854 sum 23.962 -1.733 -7.154 25.067 Atomic orbital electron populations 1.22532 0.93425 1.05419 1.02903 1.22113 0.94700 0.91358 0.81697 1.21865 1.01994 0.92535 1.03379 1.22513 1.01310 1.03579 0.96613 1.86287 1.71594 1.23073 1.46757 1.17980 0.78638 0.80685 0.81943 1.90972 1.40101 1.70201 1.42283 1.44231 1.50974 1.13615 1.26600 1.21475 0.91661 0.81726 0.99567 1.20114 0.88210 0.83036 0.77950 1.90706 1.67321 1.32806 1.49792 1.46123 1.08962 1.24898 1.56654 1.21675 0.77210 1.00389 1.01294 1.21877 1.01079 0.94490 0.98289 1.19021 0.87343 0.97444 0.97483 1.21191 0.91865 1.07333 1.35666 0.92691 1.25026 0.96957 0.96553 0.95888 1.69964 1.01686 1.35485 1.46094 0.86588 0.78218 0.83175 0.79976 1.20654 1.21186 1.19888 1.23892 0.95658 1.00020 0.98478 1.22459 0.84351 0.93240 0.97040 1.92830 1.57565 1.71854 1.95130 1.23870 0.97070 1.01113 0.96377 0.91719 0.91077 0.89263 0.91609 0.90065 0.91260 0.89398 0.91074 0.92306 0.75235 0.77040 0.91580 0.91763 0.92780 0.92907 0.96295 0.96259 0.92916 0.85672 0.88788 0.87376 0.88420 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.26 8.37 37.16 0.31 -1.95 16 2 C 0.14 1.49 1.13 -90.62 -0.10 1.39 16 3 C -0.14 -1.15 8.85 37.15 0.33 -0.82 16 4 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 5 O -0.36 -4.33 9.94 -40.32 -0.40 -4.73 16 6 C 0.65 8.43 7.61 54.05 0.41 8.84 16 7 O -0.55 -8.56 10.59 -19.28 -0.20 -8.76 16 8 N -0.69 -7.08 4.32 -52.79 -0.23 -7.31 16 9 C 0.15 1.57 0.95 -132.16 -0.12 1.45 16 10 C 0.52 7.83 6.22 -10.99 -0.07 7.76 16 11 O -0.53 -9.79 15.92 5.55 0.09 -9.70 16 12 N -0.72 -10.72 5.46 -60.29 -0.33 -11.05 16 13 C 0.12 2.12 5.68 -4.04 -0.02 2.10 16 14 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 15 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 16 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.14 -1.45 6.76 -25.83 -0.17 -1.63 16 25 C 0.07 0.49 5.69 -25.83 -0.15 0.34 16 26 F -0.19 -1.79 17.00 2.25 0.04 -1.75 16 27 C -0.15 -1.05 7.25 -25.92 -0.19 -1.24 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.34 5.88 -51.93 -0.31 1.04 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.11 5.88 -51.93 -0.31 0.80 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.41 3.18 8.75 -40.82 -0.36 2.82 16 38 H 0.40 5.08 8.07 -40.82 -0.33 4.75 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 46 H 0.13 1.33 7.34 -51.93 -0.38 0.94 16 47 H 0.09 1.10 7.53 -51.93 -0.39 0.71 16 48 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.10 0.53 8.09 -51.93 -0.42 0.11 16 50 H 0.12 0.82 8.09 -51.93 -0.42 0.40 16 LS Contribution 408.74 15.07 6.16 6.16 Total: -1.00 -34.33 408.74 -7.69 -42.01 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -8.37 Total: 5.54 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.16 Total: -0.76 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.18 Total: -44.49 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.52 Total: -23.20 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.33 -7.69 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186910173.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.745 kcal (2) G-P(sol) polarization free energy of solvation -34.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds