Wall clock time and date at job start Wed Apr 1 2020 02:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47132 * 2 1 4 4 C 1.52997 * 109.47066 * 239.99363 * 2 1 3 5 5 C 1.50698 * 109.46935 * 60.00323 * 4 2 1 6 6 O 1.21287 * 119.99996 * 0.02562 * 5 4 2 7 7 N 1.34780 * 120.00303 * 179.97438 * 5 4 2 8 8 C 1.47022 * 125.64448 * 359.69304 * 7 5 4 9 9 C 1.54313 * 107.27340 * 180.96726 * 8 7 5 10 10 C 1.55157 * 102.86591 * 22.52835 * 9 8 7 11 11 C 1.47418 * 125.65183 * 180.02562 * 7 5 4 12 12 N 1.46506 * 109.46976 * 119.99575 * 2 1 3 13 13 C 1.34777 * 120.00017 * 300.00005 * 12 2 1 14 14 O 1.21542 * 119.99838 * 359.97438 * 13 12 2 15 15 C 1.47888 * 119.99587 * 179.97438 * 13 12 2 16 16 C 1.39912 * 120.03008 * 359.97438 * 15 13 12 17 17 C 1.38329 * 120.36210 * 180.02562 * 16 15 13 18 18 C 1.37755 * 120.41116 * 359.97438 * 17 16 15 19 19 C 1.40750 * 120.03993 * 0.02562 * 18 17 16 20 20 C 1.41432 * 120.17732 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99660 * 150.17685 * 20 19 18 22 22 C 1.39930 * 120.00204 * 330.18089 * 20 19 18 23 23 N 1.30824 * 120.00170 * 161.73158 * 22 20 19 24 24 Si 1.86802 * 119.99882 * 341.72549 * 22 20 19 25 25 H 1.48498 * 109.47019 * 95.41425 * 24 22 20 26 26 H 1.48493 * 109.47000 * 215.41400 * 24 22 20 27 27 H 1.48500 * 109.47040 * 335.41493 * 24 22 20 28 28 C 1.38999 * 120.02054 * 179.97438 * 15 13 12 29 29 H 1.09009 * 109.46993 * 300.00243 * 1 2 3 30 30 H 1.08995 * 109.47213 * 60.00094 * 1 2 3 31 31 H 1.08997 * 109.47418 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46883 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46612 * 299.99669 * 3 2 1 34 34 H 1.09000 * 109.47203 * 59.99986 * 3 2 1 35 35 H 1.09006 * 109.47036 * 180.02562 * 4 2 1 36 36 H 1.09003 * 109.47469 * 300.00299 * 4 2 1 37 37 H 1.09000 * 109.88196 * 300.51169 * 8 7 5 38 38 H 1.08996 * 109.88480 * 61.67953 * 8 7 5 39 39 H 1.08997 * 110.92235 * 264.10880 * 9 8 7 40 40 H 1.09006 * 110.58636 * 140.78479 * 9 8 7 41 41 H 1.08994 * 111.00554 * 206.22922 * 10 9 8 42 42 H 1.09000 * 111.00763 * 82.37465 * 10 9 8 43 43 H 1.09001 * 110.36771 * 274.67354 * 11 7 5 44 44 H 1.09005 * 110.36689 * 36.88398 * 11 7 5 45 45 H 0.96998 * 119.99441 * 119.99884 * 12 2 1 46 46 H 1.08006 * 119.81676 * 0.03857 * 16 15 13 47 47 H 1.08003 * 119.79248 * 179.97438 * 17 16 15 48 48 H 1.07993 * 119.98024 * 180.02562 * 18 17 16 49 49 H 0.96998 * 119.99940 * 179.97438 * 23 22 20 50 50 H 1.07996 * 120.20436 * 0.25466 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 8 0.8408 0.9754 -2.3684 7 7 1.8636 -0.4712 -3.7038 8 6 2.7028 -1.6460 -3.9820 9 6 2.8200 -1.7725 -5.5155 10 6 2.5166 -0.3318 -6.0052 11 6 1.4436 0.1239 -4.9854 12 7 2.0183 -0.6906 1.1963 13 6 1.6927 -0.2300 2.4203 14 8 0.9943 0.7585 2.5317 15 6 2.1852 -0.9275 3.6278 16 6 2.9887 -2.0657 3.5002 17 6 3.4527 -2.7238 4.6250 18 6 3.1298 -2.2661 5.8835 19 6 2.3226 -1.1226 6.0318 20 6 1.9897 -0.6499 7.3226 21 1 1.8153 0.4038 7.4833 22 6 1.8863 -1.5473 8.3912 23 7 1.9362 -1.1071 9.6222 24 14 1.6769 -3.3738 8.0602 25 1 3.0035 -4.0398 8.1031 26 1 0.7920 -3.9661 9.0951 27 1 1.0690 -3.5673 6.7192 28 6 1.8501 -0.4526 4.8905 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 -0.7218 -1.2489 36 1 1.6766 -1.7491 -1.2491 37 1 3.6909 -1.5081 -3.5429 38 1 2.2347 -2.5412 -3.5729 39 1 2.0839 -2.4755 -5.9054 40 1 3.8290 -2.0718 -5.7993 41 1 2.1145 -0.3401 -7.0182 42 1 3.4050 0.2968 -5.9442 43 1 0.4620 -0.2518 -5.2745 44 1 1.4259 1.2112 -4.9111 45 1 2.5759 -1.4792 1.1073 46 1 3.2483 -2.4325 2.5180 47 1 4.0720 -3.6018 4.5158 48 1 3.4962 -2.7850 6.7569 49 1 1.8641 -1.7291 10.3630 50 1 1.2268 0.4232 4.9938 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188688404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:41 Heat of formation + Delta-G solvation = -50.824224 kcal Electronic energy + Delta-G solvation = -29895.422735 eV Core-core repulsion = 25887.109441 eV Total energy + Delta-G solvation = -4008.313294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.77043 -39.60212 -38.09766 -37.34384 -35.63409 -33.71775 -32.35846 -31.95196 -30.32606 -29.91490 -29.51145 -28.05617 -27.01444 -25.23695 -24.08327 -23.30199 -21.75550 -20.92243 -20.62695 -19.47651 -19.15223 -17.90434 -17.50192 -16.99776 -16.38678 -15.69889 -15.54113 -15.36388 -14.89735 -14.66731 -14.53862 -14.10239 -13.98332 -13.75309 -13.62676 -13.58808 -13.29721 -13.08766 -12.83040 -12.74338 -12.70832 -12.06742 -11.91759 -11.81802 -11.74076 -11.71281 -11.61040 -11.29062 -11.26174 -11.10669 -10.99091 -10.91114 -10.73498 -10.50434 -10.01765 -9.92683 -9.69422 -9.31213 -9.00077 -8.94671 -8.75255 -7.85405 -7.74743 -6.99922 -4.54470 1.94957 2.34452 2.52274 2.52609 3.05425 3.17714 3.26228 3.53486 3.66986 3.93598 3.98919 4.05859 4.35925 4.44132 4.50063 4.63317 4.72335 4.81806 4.85364 5.04846 5.16909 5.20726 5.31838 5.32894 5.34855 5.36657 5.43673 5.52286 5.58025 5.61853 5.85316 5.88513 6.01174 6.07282 6.13232 6.16275 6.17136 6.40095 6.58498 6.65950 6.67926 6.72617 6.87692 6.99840 7.14510 7.22988 7.42236 7.51008 7.76430 7.84183 7.90712 8.06347 8.29167 8.54321 8.71416 8.80720 10.02274 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025843 B = 0.002101 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.192877 B =13326.090864 C =13982.910346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.194 3.806 3 C -0.172 4.172 4 C -0.141 4.141 5 C 0.537 3.463 6 O -0.521 6.521 7 N -0.623 5.623 8 C 0.097 3.903 9 C -0.132 4.132 10 C -0.135 4.135 11 C 0.104 3.896 12 N -0.730 5.730 13 C 0.568 3.432 14 O -0.539 6.539 15 C -0.107 4.107 16 C -0.217 4.217 17 C -0.084 4.084 18 C -0.223 4.223 19 C 0.082 3.918 20 C -0.442 4.442 21 H 0.094 0.906 22 C 0.083 3.917 23 N -0.804 5.804 24 Si 0.911 3.089 25 H -0.270 1.270 26 H -0.289 1.289 27 H -0.244 1.244 28 C -0.136 4.136 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.396 0.604 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.286 0.714 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.428 -5.210 -28.295 28.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.108 3.892 3 C -0.230 4.230 4 C -0.181 4.181 5 C 0.326 3.674 6 O -0.397 6.397 7 N -0.359 5.359 8 C -0.026 4.026 9 C -0.170 4.170 10 C -0.173 4.173 11 C -0.018 4.018 12 N -0.384 5.384 13 C 0.358 3.642 14 O -0.417 6.417 15 C -0.111 4.111 16 C -0.237 4.237 17 C -0.102 4.102 18 C -0.242 4.242 19 C 0.079 3.921 20 C -0.470 4.470 21 H 0.112 0.888 22 C -0.136 4.136 23 N -0.427 5.427 24 Si 0.738 3.262 25 H -0.196 1.196 26 H -0.217 1.217 27 H -0.167 1.167 28 C -0.156 4.156 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.231 0.769 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.121 0.879 49 H 0.097 0.903 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.494 -3.908 -27.760 28.144 hybrid contribution 0.428 -1.492 0.033 1.553 sum 2.922 -5.400 -27.727 28.399 Atomic orbital electron populations 1.22432 0.93800 1.01669 1.05118 1.19859 0.94914 0.92350 0.82047 1.22432 0.99825 0.95632 1.05118 1.21892 1.02802 1.00882 0.92563 1.20028 0.80045 0.84288 0.83036 1.90644 1.37569 1.26079 1.85407 1.48544 1.51877 1.29972 1.05532 1.22083 0.95210 0.88518 0.96815 1.22640 1.03045 0.97494 0.93846 1.22798 0.99250 0.96325 0.98907 1.22218 0.97645 0.99514 0.82447 1.46080 1.54818 1.32274 1.05192 1.18670 0.79031 0.83484 0.83044 1.90646 1.37914 1.26298 1.86810 1.19469 1.01759 0.97499 0.92328 1.20369 1.07147 0.99482 0.96731 1.20503 0.98745 0.98109 0.92829 1.21166 1.04963 1.02109 0.95993 1.17708 0.90081 0.91104 0.93253 1.19519 1.40077 0.97261 0.90159 0.88848 1.26170 0.91189 1.02039 0.94243 1.69692 1.34409 1.38726 0.99896 0.86305 0.78850 0.81256 0.79833 1.19586 1.21683 1.16703 1.21279 1.01991 1.02045 0.90271 0.90226 0.89698 0.93747 0.93741 0.89700 0.90227 0.88395 0.88404 0.91097 0.91119 0.90362 0.89823 0.89704 0.90490 0.91437 0.90228 0.76854 0.88704 0.88370 0.87943 0.90335 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 8.10 37.16 0.30 -2.33 16 2 C 0.19 2.68 0.80 -131.82 -0.11 2.57 16 3 C -0.17 -2.62 8.10 37.16 0.30 -2.32 16 4 C -0.14 -1.38 4.07 -27.89 -0.11 -1.49 16 5 C 0.54 5.86 7.26 -10.98 -0.08 5.78 16 6 O -0.52 -7.42 11.60 5.55 0.06 -7.36 16 7 N -0.62 -5.06 3.33 -170.54 -0.57 -5.63 16 8 C 0.10 0.48 6.48 -3.07 -0.02 0.46 16 9 C -0.13 -0.45 6.95 -24.90 -0.17 -0.62 16 10 C -0.13 -0.55 7.08 -24.59 -0.17 -0.72 16 11 C 0.10 0.71 6.91 -2.54 -0.02 0.70 16 12 N -0.73 -10.92 5.06 -48.53 -0.25 -11.17 16 13 C 0.57 11.14 7.19 -12.31 -0.09 11.06 16 14 O -0.54 -12.03 12.54 5.33 0.07 -11.97 16 15 C -0.11 -2.29 5.87 -105.04 -0.62 -2.91 16 16 C -0.22 -4.15 9.55 -38.92 -0.37 -4.53 16 17 C -0.08 -1.69 10.01 -39.72 -0.40 -2.09 16 18 C -0.22 -5.19 7.17 -38.81 -0.28 -5.47 16 19 C 0.08 2.06 5.10 -106.87 -0.55 1.52 16 20 C -0.44 -11.96 9.57 -37.73 -0.36 -12.32 16 21 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 22 C 0.08 2.16 5.40 -17.35 -0.09 2.06 16 23 N -0.80 -21.26 13.93 55.55 0.77 -20.49 16 24 Si 0.91 20.43 24.52 -169.99 -4.17 16.26 16 25 H -0.27 -5.79 6.71 56.52 0.38 -5.41 16 26 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.24 -5.60 6.86 56.52 0.39 -5.22 16 28 C -0.14 -3.29 9.34 -38.44 -0.36 -3.65 16 29 H 0.08 1.45 6.17 -51.92 -0.32 1.13 16 30 H 0.08 1.30 5.51 -51.93 -0.29 1.02 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.30 5.51 -51.93 -0.29 1.01 16 34 H 0.08 1.45 6.16 -51.93 -0.32 1.13 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 45 H 0.40 4.88 6.49 -40.82 -0.26 4.62 16 46 H 0.09 1.43 6.38 -52.48 -0.33 1.10 16 47 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 48 H 0.10 2.37 4.72 -52.49 -0.25 2.12 16 49 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 50 H 0.12 2.86 7.64 -52.49 -0.40 2.46 16 LS Contribution 387.19 15.07 5.83 5.83 Total: -1.00 -31.35 387.19 -8.98 -40.33 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -7.54 Total: 8.48 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -3.19 Total: -14.29 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.04 Total: -37.29 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.13 Total: -19.32 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.17 Total: 16.26 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.35 -8.98 -40.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188688404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.494 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds