Wall clock time and date at job start Wed Apr 1 2020 04:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46773 * 2 1 4 4 C 1.53002 * 109.47080 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47433 * 180.02562 * 4 3 2 6 6 C 1.42907 * 114.00198 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.46872 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47127 * 64.19093 * 7 6 5 9 9 C 1.46905 * 110.99971 * 199.45039 * 8 7 6 10 10 C 1.46898 * 111.00318 * 75.49456 * 8 7 6 11 11 H 1.08999 * 110.88787 * 311.75308 * 10 8 7 12 12 C 1.55157 * 111.00665 * 187.86751 * 10 8 7 13 13 C 1.54315 * 102.94634 * 206.42514 * 12 10 8 14 14 N 1.47023 * 107.27175 * 22.19564 * 13 12 10 15 15 C 1.34773 * 125.65219 * 181.10123 * 14 13 12 16 16 O 1.21280 * 120.00630 * 179.97438 * 15 14 13 17 17 C 1.50711 * 119.99680 * 359.97304 * 15 14 13 18 18 S 1.80997 * 109.46799 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99679 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00423 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00256 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00432 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99466 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47096 * 90.00348 * 23 21 19 25 25 H 1.48504 * 109.46909 * 209.99803 * 23 21 19 26 26 H 1.48491 * 109.47202 * 329.99662 * 23 21 19 27 27 C 1.47468 * 108.72106 * 1.02431 * 14 13 12 28 28 H 1.08994 * 109.46927 * 59.99764 * 1 2 3 29 29 H 1.08993 * 109.46958 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46889 * 299.99934 * 1 2 3 31 31 H 1.08995 * 109.47047 * 240.00632 * 2 1 3 32 32 H 1.08998 * 109.47051 * 119.99763 * 2 1 3 33 33 H 1.09004 * 109.47359 * 60.00353 * 3 2 1 34 34 H 1.08994 * 109.47587 * 299.99832 * 3 2 1 35 35 H 1.09005 * 109.47343 * 300.00138 * 4 3 2 36 36 H 1.08997 * 109.47214 * 59.99951 * 4 3 2 37 37 H 1.09000 * 109.47053 * 299.99907 * 6 5 4 38 38 H 1.08995 * 109.46879 * 59.99862 * 6 5 4 39 39 H 1.09010 * 109.46690 * 184.18237 * 7 6 5 40 40 H 1.08993 * 109.47284 * 304.18371 * 7 6 5 41 41 H 1.09003 * 109.47129 * 67.34839 * 9 8 7 42 42 H 1.08999 * 109.47251 * 187.35174 * 9 8 7 43 43 H 1.09000 * 109.47036 * 307.35187 * 9 8 7 44 44 H 1.09007 * 110.71848 * 324.79530 * 12 10 8 45 45 H 1.09002 * 110.71577 * 88.06064 * 12 10 8 46 46 H 1.09002 * 109.88379 * 141.60996 * 13 12 10 47 47 H 1.09000 * 109.88140 * 262.62293 * 13 12 10 48 48 H 1.09006 * 109.46796 * 300.00032 * 17 15 14 49 49 H 1.09001 * 109.47237 * 60.00181 * 17 15 14 50 50 H 0.96998 * 120.00107 * 179.97438 * 22 21 19 51 51 H 1.09007 * 110.40420 * 217.08681 * 27 14 13 52 52 H 1.08999 * 110.35086 * 94.74718 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.4709 2.9027 -0.0012 7 6 5.8653 4.3810 -0.0010 8 7 5.4099 5.0092 1.2464 9 6 5.3446 6.4701 1.1068 10 6 6.2704 4.6260 2.3735 11 1 6.4285 3.5477 2.3927 12 6 5.6804 5.1256 3.7187 13 6 6.9300 5.2674 4.6130 14 7 8.0909 5.4074 3.7217 15 6 9.3734 5.5342 4.1163 16 8 10.2543 5.6430 3.2898 17 6 9.7128 5.5409 5.5847 18 16 11.5017 5.7254 5.7894 19 6 11.6122 5.7029 7.5478 20 1 10.7177 5.5976 8.1439 21 6 12.8488 5.8207 8.1671 22 7 12.9314 5.8044 9.4807 23 14 14.3960 6.0022 7.1361 24 1 14.6603 7.4425 6.8894 25 1 15.5465 5.4049 7.8607 26 1 14.2113 5.3034 5.8390 27 6 7.6204 5.3843 2.3243 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9338 0.9286 0.8891 36 1 3.9330 0.9289 -0.8908 37 1 5.8744 2.4185 0.8881 38 1 5.8729 2.4198 -0.8918 39 1 6.9493 4.4678 -0.0768 40 1 5.4004 4.8811 -0.8506 41 1 4.5540 6.7330 0.4040 42 1 5.1321 6.9187 2.0772 43 1 6.2994 6.8426 0.7355 44 1 5.1873 6.0892 3.5893 45 1 4.9905 4.3909 4.1338 46 1 6.8371 6.1525 5.2423 47 1 7.0428 4.3800 5.2358 48 1 9.2040 6.3730 6.0714 49 1 9.3898 4.6030 6.0365 50 1 13.7956 5.8863 9.9134 51 1 8.3316 4.8520 1.6926 52 1 7.4718 6.3999 1.9575 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188982113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:42 Heat of formation + Delta-G solvation = -81.240011 kcal Electronic energy + Delta-G solvation = -27729.872723 eV Core-core repulsion = 23855.684452 eV Total energy + Delta-G solvation = -3874.188270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.34063 -38.75774 -37.94853 -35.94536 -35.13497 -32.44786 -31.55943 -30.41311 -29.74970 -28.84202 -28.03629 -25.67370 -25.37487 -23.83533 -23.54596 -22.27390 -21.42199 -19.94510 -19.46272 -17.76286 -17.27960 -16.90730 -16.64507 -16.55325 -15.79575 -15.39429 -15.16425 -15.00418 -14.72772 -14.63201 -14.24806 -14.12246 -13.84178 -13.72612 -13.51447 -13.22966 -13.02560 -12.84305 -12.66613 -12.52017 -12.40496 -12.12723 -11.96402 -11.87756 -11.66319 -11.59466 -11.39075 -11.33368 -11.26721 -11.19159 -11.03220 -11.01649 -10.74969 -10.62340 -9.87040 -9.83838 -9.56544 -9.01084 -8.80430 -8.51049 -8.40608 -6.93218 -6.29622 -4.01571 2.65596 2.92167 3.14124 3.31798 3.32886 3.49539 3.50925 3.63620 4.23745 4.32680 4.42878 4.47740 4.49667 4.63392 4.68546 4.69771 4.79710 4.81242 4.88404 4.95641 5.00773 5.05498 5.07178 5.09553 5.13210 5.16487 5.20706 5.23864 5.32474 5.39564 5.40696 5.45210 5.49277 5.50463 5.57380 5.62601 5.64263 5.69539 5.76912 5.82389 5.82838 5.89366 5.92256 6.00809 6.27133 6.67831 6.69496 6.98915 7.55301 7.93401 8.40672 8.41298 9.16541 10.79568 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019792 B = 0.001760 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.343240 B =15902.712915 C =16339.543767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.117 4.117 4 C 0.060 3.940 5 O -0.372 6.372 6 C 0.069 3.931 7 C 0.052 3.948 8 N -0.516 5.516 9 C 0.015 3.985 10 C 0.068 3.932 11 H 0.097 0.903 12 C -0.121 4.121 13 C 0.099 3.901 14 N -0.621 5.621 15 C 0.547 3.453 16 O -0.520 6.520 17 C -0.117 4.117 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.236 1.236 27 C 0.073 3.927 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.032 0.968 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.271 0.729 51 H 0.074 0.926 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.703 -7.436 -20.198 32.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.155 4.155 4 C -0.017 4.017 5 O -0.291 6.291 6 C -0.008 4.008 7 C -0.076 4.076 8 N -0.238 5.238 9 C -0.133 4.133 10 C -0.041 4.041 11 H 0.115 0.885 12 C -0.159 4.159 13 C -0.024 4.024 14 N -0.359 5.359 15 C 0.335 3.665 16 O -0.394 6.394 17 C -0.267 4.267 18 S 0.083 5.917 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.160 1.160 27 C -0.052 4.052 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.051 0.949 44 H 0.101 0.899 45 H 0.106 0.894 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.081 0.919 51 H 0.093 0.907 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.802 -7.265 -21.136 32.651 hybrid contribution 0.761 0.030 0.733 1.057 sum -23.042 -7.235 -20.403 31.616 Atomic orbital electron populations 1.21752 0.95411 1.01710 1.02048 1.21451 0.96271 0.96177 1.02152 1.21521 0.93524 0.97038 1.03384 1.22493 0.95137 0.84257 0.99767 1.87965 1.20416 1.25428 1.95279 1.22492 0.82071 0.96348 0.99937 1.22192 0.98426 0.94138 0.92822 1.62123 1.49504 1.08918 1.03275 1.22536 1.00577 0.87338 1.02831 1.23013 0.89654 0.99995 0.91487 0.88466 1.22714 0.96503 1.02857 0.93853 1.22079 0.84702 1.02260 0.93387 1.48354 1.05976 1.74659 1.06883 1.20020 0.80231 0.75323 0.90919 1.90700 1.45825 1.48360 1.54526 1.23252 1.03760 1.05702 0.94029 1.84782 1.00060 1.96441 1.10393 1.22307 0.98048 1.58143 0.88376 0.89372 1.24702 0.98668 0.93224 0.94629 1.69934 1.25888 1.47859 1.07961 0.86741 0.82781 0.80085 0.82283 1.19196 1.19906 1.15962 1.22915 0.96465 1.01101 0.84676 0.92653 0.92650 0.92538 0.91982 0.91833 0.90993 0.91303 0.93596 0.93864 0.93274 0.93127 0.92556 0.89725 0.91025 0.90741 0.94924 0.89898 0.89425 0.90976 0.90957 0.88560 0.88508 0.91933 0.90750 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.64 5.93 -26.73 -0.16 -0.79 16 3 C -0.12 -0.75 5.58 -26.73 -0.15 -0.90 16 4 C 0.06 0.43 5.94 37.16 0.22 0.66 16 5 O -0.37 -3.44 10.28 -35.23 -0.36 -3.80 16 6 C 0.07 0.54 6.12 37.16 0.23 0.76 16 7 C 0.05 0.41 5.29 -3.83 -0.02 0.39 16 8 N -0.52 -4.41 4.65 -232.30 -1.08 -5.49 16 9 C 0.01 0.11 8.43 60.07 0.51 0.62 16 10 C 0.07 0.63 2.97 -65.56 -0.19 0.43 16 11 H 0.10 0.91 6.64 -51.93 -0.34 0.57 16 12 C -0.12 -1.01 6.47 -24.90 -0.16 -1.18 16 13 C 0.10 1.05 6.49 -3.07 -0.02 1.03 16 14 N -0.62 -8.76 3.33 -170.48 -0.57 -9.33 16 15 C 0.55 10.27 7.87 -10.98 -0.09 10.19 16 16 O -0.52 -11.67 16.12 5.56 0.09 -11.58 16 17 C -0.12 -2.34 5.35 36.01 0.19 -2.15 16 18 S -0.14 -3.68 18.55 -107.50 -1.99 -5.68 16 19 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 20 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 21 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 22 N -0.88 -26.58 13.97 55.49 0.78 -25.81 16 23 Si 0.86 21.89 27.74 -169.99 -4.71 17.17 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 27 C 0.07 0.86 5.62 -2.50 -0.01 0.85 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.05 0.39 6.70 -51.93 -0.35 0.04 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.43 7.24 -51.92 -0.38 0.05 16 40 H 0.08 0.62 7.94 -51.93 -0.41 0.21 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.56 5.89 -51.93 -0.31 0.25 16 43 H 0.03 0.26 6.53 -51.93 -0.34 -0.08 16 44 H 0.08 0.65 5.97 -51.93 -0.31 0.34 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16 49 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 50 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 51 H 0.07 0.97 7.78 -51.92 -0.40 0.56 16 52 H 0.07 0.82 5.63 -51.93 -0.29 0.53 16 LS Contribution 420.04 15.07 6.33 6.33 Total: -1.00 -34.24 420.04 -10.07 -44.31 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -9.47 Total: -3.60 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 0.93 Total: -2.51 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: -0.87 Total: -40.63 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.27 Total: -15.39 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.17 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.24 -10.07 -44.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188982113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.930 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds