Wall clock time and date at job start Wed Apr 1 2020 04:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46773 * 2 1 4 4 C 1.53002 * 109.47080 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47433 * 180.02562 * 4 3 2 6 6 C 1.42907 * 114.00198 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.46872 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47127 * 64.19093 * 7 6 5 9 9 C 1.46905 * 110.99971 * 199.45039 * 8 7 6 10 10 C 1.46898 * 111.00318 * 75.49456 * 8 7 6 11 11 H 1.08999 * 110.88787 * 311.75308 * 10 8 7 12 12 C 1.55157 * 111.00665 * 187.86751 * 10 8 7 13 13 C 1.54315 * 102.94634 * 206.42514 * 12 10 8 14 14 N 1.47023 * 107.27175 * 22.19564 * 13 12 10 15 15 C 1.34773 * 125.65219 * 181.10123 * 14 13 12 16 16 O 1.21280 * 120.00630 * 179.97438 * 15 14 13 17 17 C 1.50711 * 119.99680 * 359.97304 * 15 14 13 18 18 S 1.80997 * 109.46799 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99679 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00423 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00256 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00432 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99466 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47096 * 90.00348 * 23 21 19 25 25 H 1.48504 * 109.46909 * 209.99803 * 23 21 19 26 26 H 1.48491 * 109.47202 * 329.99662 * 23 21 19 27 27 C 1.47468 * 108.72106 * 1.02431 * 14 13 12 28 28 H 1.08994 * 109.46927 * 59.99764 * 1 2 3 29 29 H 1.08993 * 109.46958 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46889 * 299.99934 * 1 2 3 31 31 H 1.08995 * 109.47047 * 240.00632 * 2 1 3 32 32 H 1.08998 * 109.47051 * 119.99763 * 2 1 3 33 33 H 1.09004 * 109.47359 * 60.00353 * 3 2 1 34 34 H 1.08994 * 109.47587 * 299.99832 * 3 2 1 35 35 H 1.09005 * 109.47343 * 300.00138 * 4 3 2 36 36 H 1.08997 * 109.47214 * 59.99951 * 4 3 2 37 37 H 1.09000 * 109.47053 * 299.99907 * 6 5 4 38 38 H 1.08995 * 109.46879 * 59.99862 * 6 5 4 39 39 H 1.09010 * 109.46690 * 184.18237 * 7 6 5 40 40 H 1.08993 * 109.47284 * 304.18371 * 7 6 5 41 41 H 1.09003 * 109.47129 * 67.34839 * 9 8 7 42 42 H 1.08999 * 109.47251 * 187.35174 * 9 8 7 43 43 H 1.09000 * 109.47036 * 307.35187 * 9 8 7 44 44 H 1.09007 * 110.71848 * 324.79530 * 12 10 8 45 45 H 1.09002 * 110.71577 * 88.06064 * 12 10 8 46 46 H 1.09002 * 109.88379 * 141.60996 * 13 12 10 47 47 H 1.09000 * 109.88140 * 262.62293 * 13 12 10 48 48 H 1.09006 * 109.46796 * 300.00032 * 17 15 14 49 49 H 1.09001 * 109.47237 * 60.00181 * 17 15 14 50 50 H 0.96998 * 120.00107 * 179.97438 * 22 21 19 51 51 H 1.09007 * 110.40420 * 217.08681 * 27 14 13 52 52 H 1.08999 * 110.35086 * 94.74718 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.4709 2.9027 -0.0012 7 6 5.8653 4.3810 -0.0010 8 7 5.4099 5.0092 1.2464 9 6 5.3446 6.4701 1.1068 10 6 6.2704 4.6260 2.3735 11 1 6.4285 3.5477 2.3927 12 6 5.6804 5.1256 3.7187 13 6 6.9300 5.2674 4.6130 14 7 8.0909 5.4074 3.7217 15 6 9.3734 5.5342 4.1163 16 8 10.2543 5.6430 3.2898 17 6 9.7128 5.5409 5.5847 18 16 11.5017 5.7254 5.7894 19 6 11.6122 5.7029 7.5478 20 1 10.7177 5.5976 8.1439 21 6 12.8488 5.8207 8.1671 22 7 12.9314 5.8044 9.4807 23 14 14.3960 6.0022 7.1361 24 1 14.6603 7.4425 6.8894 25 1 15.5465 5.4049 7.8607 26 1 14.2113 5.3034 5.8390 27 6 7.6204 5.3843 2.3243 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9338 0.9286 0.8891 36 1 3.9330 0.9289 -0.8908 37 1 5.8744 2.4185 0.8881 38 1 5.8729 2.4198 -0.8918 39 1 6.9493 4.4678 -0.0768 40 1 5.4004 4.8811 -0.8506 41 1 4.5540 6.7330 0.4040 42 1 5.1321 6.9187 2.0772 43 1 6.2994 6.8426 0.7355 44 1 5.1873 6.0892 3.5893 45 1 4.9905 4.3909 4.1338 46 1 6.8371 6.1525 5.2423 47 1 7.0428 4.3800 5.2358 48 1 9.2040 6.3730 6.0714 49 1 9.3898 4.6030 6.0365 50 1 13.7956 5.8863 9.9134 51 1 8.3316 4.8520 1.6926 52 1 7.4718 6.3999 1.9575 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188982113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:40 Heat of formation + Delta-G solvation = -103.738721 kcal Electronic energy + Delta-G solvation = -27730.848340 eV Core-core repulsion = 23855.684452 eV Total energy + Delta-G solvation = -3875.163888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.38513 -39.73459 -38.78459 -36.83153 -35.68322 -34.69109 -32.60538 -31.18093 -30.87224 -29.37936 -29.06695 -27.86804 -26.17928 -24.68030 -24.10149 -23.01031 -21.89573 -20.96478 -20.55694 -19.65058 -18.24998 -18.02556 -17.43916 -17.26657 -17.14082 -16.68002 -16.33437 -16.17587 -15.83507 -15.57845 -15.23706 -14.95496 -14.91052 -14.87168 -14.58934 -14.11721 -14.08673 -13.80259 -13.70739 -13.52140 -13.35751 -13.07012 -13.03888 -12.98340 -12.72215 -12.68845 -12.59540 -12.31316 -12.15357 -11.96661 -11.88692 -11.85610 -11.76627 -11.49333 -11.43200 -11.18792 -11.09266 -10.57156 -10.44099 -9.85952 -9.23197 -9.03406 -8.53118 -6.24892 0.93131 1.29888 1.42903 1.45393 1.51047 1.98311 2.23466 2.63973 2.73788 2.85060 2.86694 3.37590 3.62452 3.76704 3.83935 4.02975 4.03754 4.11423 4.15716 4.17253 4.24804 4.25892 4.28528 4.37503 4.40542 4.43770 4.50671 4.53754 4.55802 4.66100 4.69650 4.73912 4.77322 4.88016 4.89739 4.91543 4.96704 4.98386 5.07766 5.13575 5.19328 5.26517 5.28022 5.38181 5.46873 5.69133 6.00609 6.02754 6.09560 6.28804 6.40289 6.91831 6.99177 8.59210 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019792 B = 0.001760 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.343240 B =15902.712915 C =16339.543767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.113 4.113 4 C 0.057 3.943 5 O -0.390 6.390 6 C 0.068 3.932 7 C 0.051 3.949 8 N -0.517 5.517 9 C 0.014 3.986 10 C 0.079 3.921 11 H 0.097 0.903 12 C -0.110 4.110 13 C 0.090 3.910 14 N -0.612 5.612 15 C 0.547 3.453 16 O -0.565 6.565 17 C -0.102 4.102 18 S -0.176 6.176 19 C -0.530 4.530 20 H 0.063 0.937 21 C 0.048 3.952 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.257 1.257 26 H -0.238 1.238 27 C 0.072 3.928 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.028 0.972 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.111 0.889 49 H 0.111 0.889 50 H 0.277 0.723 51 H 0.059 0.941 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.178 -7.810 -21.330 34.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.151 4.151 4 C -0.019 4.019 5 O -0.310 6.310 6 C -0.009 4.009 7 C -0.077 4.077 8 N -0.240 5.240 9 C -0.133 4.133 10 C -0.031 4.031 11 H 0.115 0.885 12 C -0.148 4.148 13 C -0.032 4.032 14 N -0.347 5.347 15 C 0.335 3.665 16 O -0.444 6.444 17 C -0.252 4.252 18 S 0.051 5.949 19 C -0.677 4.677 20 H 0.081 0.919 21 C -0.157 4.157 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.181 1.181 26 H -0.162 1.162 27 C -0.053 4.053 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.047 0.953 44 H 0.111 0.889 45 H 0.123 0.877 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.129 0.871 49 H 0.129 0.871 50 H 0.087 0.913 51 H 0.078 0.922 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.341 -7.648 -22.264 34.589 hybrid contribution 1.017 0.132 1.048 1.466 sum -24.325 -7.516 -21.216 33.140 Atomic orbital electron populations 1.21760 0.95113 1.02115 1.01997 1.21438 0.96515 0.95354 1.02486 1.21491 0.93107 0.97722 1.02732 1.22596 0.95498 0.83589 1.00219 1.87933 1.21079 1.26579 1.95402 1.22535 0.81625 0.96337 1.00400 1.22228 0.98476 0.94287 0.92661 1.62184 1.48891 1.09517 1.03389 1.22571 1.00666 0.86730 1.03332 1.22936 0.88168 0.99602 0.92392 0.88455 1.22703 0.95554 1.03929 0.92618 1.22401 0.84078 1.03172 0.93560 1.48305 1.05313 1.72209 1.08837 1.19701 0.81457 0.75614 0.89770 1.90680 1.47561 1.51040 1.55141 1.23198 0.99228 1.07056 0.95756 1.84712 1.05856 1.96649 1.07687 1.22434 0.97379 1.57802 0.90103 0.91890 1.25531 1.01593 0.92919 0.95692 1.70007 1.27090 1.48789 1.09380 0.85888 0.79623 0.80272 0.80711 1.18673 1.18141 1.16244 1.23097 0.97493 1.01724 0.82942 0.92578 0.92026 0.92748 0.91442 0.91688 0.91861 0.91685 0.93467 0.93031 0.93512 0.91973 0.92533 0.89260 0.90232 0.90278 0.95314 0.88911 0.87692 0.90032 0.90065 0.87130 0.87053 0.91308 0.92226 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 71.98 0.71 -0.55 16 2 C -0.12 -1.09 5.93 30.60 0.18 -0.90 16 3 C -0.11 -1.33 5.58 30.59 0.17 -1.16 16 4 C 0.06 0.75 5.94 71.98 0.43 1.18 16 5 O -0.39 -6.65 10.28 -148.98 -1.53 -8.19 16 6 C 0.07 0.96 6.12 71.98 0.44 1.40 16 7 C 0.05 0.72 5.29 86.30 0.46 1.18 16 8 N -0.52 -7.79 4.65 -888.86 -4.13 -11.92 16 9 C 0.01 0.19 8.43 127.69 1.08 1.27 16 10 C 0.08 1.28 2.97 46.31 0.14 1.42 16 11 H 0.10 1.62 6.64 -2.39 -0.02 1.61 16 12 C -0.11 -1.51 6.47 31.78 0.21 -1.31 16 13 C 0.09 1.67 6.49 86.73 0.56 2.23 16 14 N -0.61 -16.32 3.33 -811.67 -2.70 -19.02 16 15 C 0.55 20.14 7.87 87.66 0.69 20.83 16 16 O -0.57 -25.46 16.12 -3.03 -0.05 -25.51 16 17 C -0.10 -3.98 5.35 71.24 0.38 -3.60 16 18 S -0.18 -9.04 18.55 -56.49 -1.05 -10.09 16 19 C -0.53 -31.05 10.04 67.96 0.68 -30.36 16 20 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 21 C 0.05 2.84 5.50 84.86 0.47 3.31 16 22 N -0.91 -55.68 13.97 21.65 0.30 -55.37 16 23 Si 0.91 45.18 27.74 68.60 1.90 47.08 16 24 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 27 C 0.07 1.60 5.62 86.85 0.49 2.08 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.05 0.67 6.70 -2.39 -0.02 0.66 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 0.80 7.24 -2.38 -0.02 0.78 16 40 H 0.09 1.17 7.94 -2.39 -0.02 1.16 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 0.98 5.89 -2.39 -0.01 0.96 16 43 H 0.03 0.41 6.53 -2.39 -0.02 0.39 16 44 H 0.09 1.14 5.97 -2.38 -0.01 1.13 16 45 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 48 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 49 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 50 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 51 H 0.06 1.52 7.78 -2.38 -0.02 1.50 16 52 H 0.08 1.64 5.63 -2.39 -0.01 1.63 16 Total: -1.00 -73.78 420.04 0.66 -73.12 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.84 Total: 12.90 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 7.08 Total: -2.99 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -6.53 Total: -86.32 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -1.58 Total: -33.70 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.08 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.05 Total: -10.09 kcal Total: -73.78 0.66 -73.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188982113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.617 kcal (2) G-P(sol) polarization free energy of solvation -73.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds