Wall clock time and date at job start Wed Apr 1 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35903 * 116.99662 * 2 1 4 4 C 1.38752 * 120.05688 * 0.25594 * 3 2 1 5 5 C 1.38130 * 119.93806 * 180.27161 * 4 3 2 6 6 C 1.38285 * 120.05946 * 359.72721 * 5 4 3 7 7 C 1.38243 * 120.10729 * 0.02562 * 6 5 4 8 8 C 1.38158 * 120.06202 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.03390 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.47562 * 144.99765 * 9 8 7 11 11 C 1.52997 * 109.47600 * 265.00749 * 9 8 7 12 12 N 1.46493 * 109.47659 * 174.99731 * 11 9 8 13 13 C 1.34776 * 120.00215 * 179.97438 * 12 11 9 14 14 O 1.21610 * 119.99962 * 359.72592 * 13 12 11 15 15 C 1.47101 * 120.00027 * 179.97438 * 13 12 11 16 16 C 1.32996 * 120.00174 * 173.76001 * 15 13 12 17 17 C 1.50704 * 119.99817 * 172.96102 * 16 15 13 18 18 C 1.50696 * 119.99918 * 352.96288 * 16 15 13 19 19 C 1.52996 * 117.50057 * 181.68061 * 18 16 15 20 20 C 1.52998 * 117.49911 * 113.02058 * 18 16 15 21 21 N 1.46509 * 109.46902 * 25.00131 * 9 8 7 22 22 C 1.36933 * 119.99536 * 84.99734 * 21 9 8 23 23 H 1.07999 * 120.00824 * 0.02562 * 22 21 9 24 24 C 1.38820 * 119.99494 * 180.02562 * 22 21 9 25 25 N 1.31618 * 120.00154 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99754 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47274 * 90.00359 * 26 24 22 28 28 H 1.48504 * 109.47112 * 210.00181 * 26 24 22 29 29 H 1.48499 * 109.47203 * 329.99966 * 26 24 22 30 30 H 1.09004 * 109.47007 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46831 * 299.99466 * 1 2 3 32 32 H 1.09001 * 109.47332 * 59.99810 * 1 2 3 33 33 H 1.07992 * 120.03191 * 0.02562 * 4 3 2 34 34 H 1.08005 * 119.96737 * 179.74669 * 5 4 3 35 35 H 1.07992 * 119.94529 * 180.02562 * 6 5 4 36 36 H 1.08009 * 119.96702 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.47376 * 54.99224 * 11 9 8 38 38 H 1.09007 * 109.46513 * 294.99611 * 11 9 8 39 39 H 0.97008 * 119.99926 * 359.97438 * 12 11 9 40 40 H 1.08008 * 119.99755 * 353.76975 * 15 13 12 41 41 H 1.09001 * 109.47022 * 90.00732 * 17 16 15 42 42 H 1.08996 * 109.46516 * 210.00193 * 17 16 15 43 43 H 1.08998 * 109.47455 * 330.00002 * 17 16 15 44 44 H 1.09000 * 115.54961 * 327.35566 * 18 16 15 45 45 H 1.09004 * 117.49837 * 0.02562 * 19 18 16 46 46 H 1.08993 * 117.49901 * 145.02041 * 19 18 16 47 47 H 1.08999 * 117.50413 * 214.97953 * 20 18 16 48 48 H 1.09004 * 117.49940 * 359.97438 * 20 18 16 49 49 H 0.96996 * 119.99827 * 265.00218 * 21 9 8 50 50 H 0.97002 * 119.99987 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0054 5 6 1.9209 3.6048 -0.0003 6 6 3.3019 3.6758 -0.0057 7 6 4.0559 2.5171 -0.0058 8 6 3.4311 1.2849 -0.0002 9 6 4.2536 0.0222 -0.0010 10 1 3.7494 -0.7404 0.5925 11 6 4.4204 -0.4771 -1.4375 12 7 5.3176 -1.6350 -1.4511 13 6 5.6121 -2.2458 -2.6159 14 8 5.1290 -1.8387 -3.6551 15 6 6.5135 -3.4082 -2.6296 16 6 6.7066 -4.0867 -3.7571 17 6 7.7468 -5.1757 -3.8123 18 6 5.8854 -3.7664 -4.9793 19 6 6.1274 -4.6084 -6.2336 20 6 6.6131 -3.1578 -6.1798 21 7 5.5717 0.2977 0.5763 22 6 5.7471 0.2551 1.9336 23 1 4.9140 0.0181 2.5787 24 6 6.9959 0.5167 2.4806 25 7 8.0112 0.8060 1.6945 26 14 7.2354 0.4579 4.3322 27 1 7.6209 -0.9175 4.7381 28 1 8.3077 1.4082 4.7231 29 1 5.9682 0.8366 5.0075 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 0.2128 2.3204 0.0100 34 1 1.3339 4.5114 -0.0003 35 1 3.7921 4.6380 -0.0097 36 1 5.1344 2.5753 -0.0104 37 1 4.8437 0.3177 -2.0516 38 1 3.4481 -0.7661 -1.8368 39 1 5.6998 -1.9623 -0.6217 40 1 7.0183 -3.7107 -1.7240 41 1 7.2928 -6.1263 -3.5324 42 1 8.1446 -5.2472 -4.8245 43 1 8.5554 -4.9414 -3.1199 44 1 4.8660 -3.4322 -4.7865 45 1 6.8804 -5.3944 -6.1746 46 1 5.2673 -4.8279 -6.8661 47 1 6.0723 -2.4236 -6.7769 48 1 7.6858 -2.9886 -6.0853 49 1 6.3201 0.5102 -0.0031 50 1 8.8837 0.9891 2.0768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198578273.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:58 Heat of formation + Delta-G solvation = 9.115546 kcal Electronic energy + Delta-G solvation = -30129.085068 eV Core-core repulsion = 26123.370957 eV Total energy + Delta-G solvation = -4005.714111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.96037 -39.47435 -37.68182 -37.11997 -35.72330 -33.44970 -33.28289 -31.96613 -29.72046 -29.67670 -28.52039 -27.22756 -26.81171 -24.00141 -23.24525 -22.53599 -22.26078 -21.55827 -20.36604 -20.04756 -18.45783 -17.69249 -17.32274 -16.73016 -15.99612 -15.86224 -15.51138 -15.37576 -14.93069 -14.69397 -14.54360 -14.13981 -13.90027 -13.63846 -13.47298 -13.26077 -13.11264 -12.94253 -12.75874 -12.68600 -12.36717 -12.20926 -11.99520 -11.70401 -11.53287 -11.29089 -11.19515 -10.96281 -10.86967 -10.80637 -10.71936 -10.65416 -10.47107 -10.30742 -10.12140 -9.74390 -9.21267 -9.03247 -8.83072 -8.38423 -8.31779 -7.71618 -7.09606 -5.83439 -3.14502 1.51433 1.82369 1.90237 3.39671 3.46697 3.47522 3.58093 3.63252 3.76047 4.04132 4.25955 4.53433 4.61560 4.87287 5.04954 5.07174 5.15133 5.17312 5.18345 5.24261 5.28662 5.47115 5.49093 5.51326 5.53451 5.55747 5.58502 5.62046 5.64712 5.74401 5.81034 5.88517 5.92311 6.00710 6.00976 6.13675 6.27875 6.32881 6.36123 6.46909 6.49224 6.61769 6.69386 6.75746 6.93808 7.00906 7.19234 7.35096 7.68600 7.77135 8.11311 8.33311 8.74547 9.46171 9.97013 10.34540 11.37909 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007701 B = 0.003593 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3635.149713 B = 7790.148888 C =10294.353347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.121 3.879 4 C -0.219 4.219 5 C -0.095 4.095 6 C -0.163 4.163 7 C -0.045 4.045 8 C -0.113 4.113 9 C 0.208 3.792 10 H 0.070 0.930 11 C 0.126 3.874 12 N -0.708 5.708 13 C 0.542 3.458 14 O -0.552 6.552 15 C -0.213 4.213 16 C -0.018 4.018 17 C -0.126 4.126 18 C -0.111 4.111 19 C -0.194 4.194 20 C -0.157 4.157 21 N -0.716 5.716 22 C -0.240 4.240 23 H 0.071 0.929 24 C -0.006 4.006 25 N -0.929 5.929 26 Si 0.904 3.096 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.139 0.861 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.410 0.590 40 H 0.128 0.872 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.133 0.867 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.090 0.910 49 H 0.387 0.613 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.776 -6.328 -10.038 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.076 3.924 4 C -0.238 4.238 5 C -0.114 4.114 6 C -0.182 4.182 7 C -0.063 4.063 8 C -0.118 4.118 9 C 0.097 3.903 10 H 0.087 0.913 11 C 0.001 3.999 12 N -0.359 5.359 13 C 0.331 3.669 14 O -0.433 6.433 15 C -0.234 4.234 16 C -0.020 4.020 17 C -0.183 4.183 18 C -0.128 4.128 19 C -0.231 4.231 20 C -0.194 4.194 21 N -0.357 5.357 22 C -0.371 4.371 23 H 0.089 0.911 24 C -0.202 4.202 25 N -0.576 5.576 26 Si 0.735 3.265 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.246 0.754 40 H 0.146 0.854 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.151 0.849 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.108 0.892 49 H 0.221 0.779 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.019 -6.238 -10.542 15.211 hybrid contribution 0.294 0.369 1.565 1.635 sum -8.725 -5.869 -8.977 13.826 Atomic orbital electron populations 1.22956 0.79434 1.03317 1.00843 1.86090 1.20433 1.27193 1.88939 1.18949 0.91982 0.83795 0.97664 1.21049 0.99191 0.92630 1.10885 1.20779 0.94709 0.96437 0.99435 1.21062 0.93728 0.98517 1.04865 1.21032 1.01102 0.90410 0.93730 1.20421 0.89968 0.98278 1.03120 1.19257 0.87583 0.91839 0.91658 0.91257 1.21484 0.93329 0.87617 0.97437 1.45886 1.48561 1.31652 1.09782 1.18478 0.81124 0.83765 0.83570 1.90698 1.54321 1.66372 1.31899 1.22469 1.03717 0.98197 0.98986 1.21711 0.93152 0.93900 0.93263 1.20979 0.97119 0.97118 1.03035 1.21431 1.01353 1.03223 0.86838 1.23134 1.03609 0.94497 1.01823 1.22784 1.00281 0.95591 1.00699 1.42482 1.04856 1.83449 1.04877 1.19197 0.94620 1.40381 0.82942 0.91149 1.24702 0.95868 1.02146 0.97524 1.69658 1.00679 1.53807 1.33505 0.86243 0.77331 0.77303 0.85617 1.21712 1.21836 1.20795 0.88746 0.93111 0.93119 0.86386 0.86789 0.86587 0.84353 0.92017 0.91585 0.75390 0.85390 0.90586 0.91072 0.90930 0.84949 0.88821 0.88919 0.88689 0.89161 0.77863 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.31 -4.95 9.64 -19.43 -0.19 -5.14 16 3 C 0.12 2.08 6.66 -39.21 -0.26 1.82 16 4 C -0.22 -3.29 9.04 -39.43 -0.36 -3.65 16 5 C -0.10 -1.41 10.04 -39.60 -0.40 -1.81 16 6 C -0.16 -2.69 10.04 -39.56 -0.40 -3.08 16 7 C -0.04 -0.85 9.32 -39.61 -0.37 -1.22 16 8 C -0.11 -2.16 5.04 -104.48 -0.53 -2.68 16 9 C 0.21 4.07 2.37 -69.08 -0.16 3.91 16 10 H 0.07 1.43 7.64 -51.93 -0.40 1.03 16 11 C 0.13 2.30 5.21 -4.05 -0.02 2.28 16 12 N -0.71 -12.35 5.38 -61.50 -0.33 -12.68 16 13 C 0.54 9.36 7.67 -12.67 -0.10 9.26 16 14 O -0.55 -10.65 13.31 5.27 0.07 -10.58 16 15 C -0.21 -3.05 9.62 -37.81 -0.36 -3.41 16 16 C -0.02 -0.23 5.80 -101.17 -0.59 -0.82 16 17 C -0.13 -1.19 9.49 36.01 0.34 -0.84 16 18 C -0.11 -1.46 4.34 -91.78 -0.40 -1.86 16 19 C -0.19 -1.99 9.79 -26.70 -0.26 -2.25 16 20 C -0.16 -1.88 10.24 -26.70 -0.27 -2.15 16 21 N -0.72 -16.37 3.30 -54.55 -0.18 -16.55 16 22 C -0.24 -6.21 9.92 -15.06 -0.15 -6.36 16 23 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 24 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 25 N -0.93 -26.34 13.06 55.49 0.72 -25.62 16 26 Si 0.90 21.62 29.55 -169.99 -5.02 16.60 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 32 H 0.05 0.49 7.67 -51.93 -0.40 0.10 16 33 H 0.12 1.44 6.30 -52.49 -0.33 1.11 16 34 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 35 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.14 2.89 7.26 -52.48 -0.38 2.51 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.41 7.17 8.12 -40.82 -0.33 6.84 16 40 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.59 6.37 -51.93 -0.33 0.26 16 43 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 44 H 0.13 2.05 6.24 -51.93 -0.32 1.73 16 45 H 0.09 0.82 6.31 -51.93 -0.33 0.49 16 46 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.39 9.52 7.80 -40.82 -0.32 9.21 16 50 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 412.22 15.07 6.21 6.21 Total: -1.00 -30.07 412.22 -9.83 -39.90 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -7.73 Total: 19.66 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -3.39 Total: -11.80 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.21 Total: -54.85 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.12 Total: -15.72 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -30.07 -9.83 -39.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198578273.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.014 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds