Wall clock time and date at job start Wed Apr 1 2020 03:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32869 * 1 3 3 C 1.47124 * 119.99672 * 2 1 4 4 C 1.50700 * 120.00290 * 5.03072 * 3 2 1 5 5 C 1.32869 * 119.99688 * 185.30925 * 3 2 1 6 6 C 1.50702 * 120.00243 * 354.71208 * 5 3 2 7 7 C 1.50704 * 109.47450 * 125.62804 * 6 5 3 8 8 O 1.21282 * 119.99829 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00083 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00256 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47369 * 179.97438 * 10 9 7 12 12 H 1.08989 * 109.47382 * 294.99960 * 11 10 9 13 13 N 1.46496 * 109.47090 * 55.00069 * 11 10 9 14 14 C 1.36942 * 120.00005 * 204.99939 * 13 11 10 15 15 H 1.07994 * 119.99750 * 0.02562 * 14 13 11 16 16 C 1.38812 * 119.99719 * 179.97438 * 14 13 11 17 17 N 1.31616 * 120.00382 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99678 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47189 * 59.99927 * 18 16 14 20 20 H 1.48495 * 109.47147 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47231 * 299.99973 * 18 16 14 22 22 C 1.50698 * 109.47129 * 174.99648 * 11 10 9 23 23 C 1.38170 * 120.03045 * 264.72852 * 22 11 10 24 24 C 1.38247 * 120.05287 * 179.77054 * 23 22 11 25 25 C 1.38284 * 120.11383 * 0.50175 * 24 23 22 26 26 C 1.38122 * 120.05579 * 359.75061 * 25 24 23 27 27 C 1.38718 * 120.02862 * 85.00192 * 22 11 10 28 28 O 1.35896 * 120.05040 * 359.97438 * 27 22 11 29 29 C 1.42906 * 116.99703 * 180.02562 * 28 27 22 30 30 H 1.07999 * 119.99790 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00165 * 180.02562 * 1 2 3 32 32 H 1.07994 * 120.00446 * 179.97438 * 2 1 3 33 33 H 1.09005 * 109.47041 * 270.27637 * 4 3 2 34 34 H 1.08998 * 109.46931 * 30.27935 * 4 3 2 35 35 H 1.09001 * 109.46854 * 150.28069 * 4 3 2 36 36 H 1.08001 * 120.00257 * 174.70649 * 5 3 2 37 37 H 1.08996 * 109.47080 * 245.63400 * 6 5 3 38 38 H 1.09007 * 109.47154 * 5.62947 * 6 5 3 39 39 H 0.97000 * 119.99922 * 359.97438 * 9 7 6 40 40 H 1.09001 * 109.46657 * 299.99798 * 10 9 7 41 41 H 1.09007 * 109.46996 * 59.99335 * 10 9 7 42 42 H 0.97007 * 120.00206 * 24.99335 * 13 11 10 43 43 H 0.97001 * 120.00208 * 179.97438 * 17 16 14 44 44 H 1.07999 * 119.97245 * 0.02562 * 23 22 11 45 45 H 1.08005 * 119.93899 * 180.24900 * 24 23 22 46 46 H 1.08000 * 119.97156 * 179.76771 * 25 24 23 47 47 H 1.08003 * 120.02634 * 180.02562 * 26 25 24 48 48 H 1.09000 * 109.47080 * 299.99774 * 29 28 27 49 49 H 1.08997 * 109.47035 * 60.00384 * 29 28 27 50 50 H 1.09001 * 109.46944 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2742 0.0000 4 6 1.3151 2.5768 0.1144 5 6 3.3887 1.2766 -0.1065 6 6 4.1470 -0.0256 -0.1072 7 6 5.0197 -0.0982 -1.3338 8 8 5.0249 0.8173 -2.1293 9 7 5.7935 -1.1808 -1.5472 10 6 6.6422 -1.2511 -2.7392 11 6 7.4120 -2.5733 -2.7400 12 1 8.0998 -2.5938 -1.8948 13 7 6.4680 -3.6880 -2.6285 14 6 6.8804 -4.8849 -2.1063 15 1 7.9014 -5.0069 -1.7763 16 6 5.9858 -5.9409 -2.0002 17 7 4.7413 -5.7921 -2.4020 18 14 6.5482 -7.5734 -1.2873 19 1 7.0269 -7.3676 0.1034 20 1 5.4121 -8.5297 -1.2839 21 1 7.6528 -8.1208 -2.1151 22 6 8.1902 -2.7007 -4.0241 23 6 7.6556 -3.3980 -5.0904 24 6 8.3671 -3.5112 -6.2703 25 6 9.6196 -2.9360 -6.3831 26 6 10.1607 -2.2423 -5.3183 27 6 9.4465 -2.1229 -4.1348 28 8 9.9766 -1.4409 -3.0857 29 6 11.2743 -0.8717 -3.2711 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8687 -0.9352 0.0004 33 1 1.0521 2.9334 -0.8815 34 1 0.4068 2.4235 0.6971 35 1 1.9446 3.3155 0.6104 36 1 3.9218 2.2119 -0.1926 37 1 4.7695 -0.0841 0.7856 38 1 3.4418 -0.8568 -0.1134 39 1 5.7890 -1.9131 -0.9111 40 1 6.0199 -1.1920 -3.6322 41 1 7.3478 -0.4202 -2.7324 42 1 5.5507 -3.5783 -2.9245 43 1 4.1162 -6.5302 -2.3282 44 1 6.6793 -3.8515 -5.0035 45 1 7.9457 -4.0532 -7.1040 46 1 10.1750 -3.0290 -7.3047 47 1 11.1388 -1.7930 -5.4071 48 1 11.9891 -1.6629 -3.4974 49 1 11.2448 -0.1614 -4.0973 50 1 11.5789 -0.3571 -2.3598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198834125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:31 Heat of formation + Delta-G solvation = -3.014004 kcal Electronic energy + Delta-G solvation = -29826.072216 eV Core-core repulsion = 25819.832129 eV Total energy + Delta-G solvation = -4006.240088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.96714 -39.31300 -37.27142 -36.86258 -35.75725 -33.50805 -32.16449 -31.77533 -30.02078 -29.73434 -29.64833 -27.63118 -26.97813 -25.33492 -23.61595 -22.75889 -21.78825 -21.57070 -20.11514 -19.93839 -17.71402 -17.63127 -17.34096 -16.68456 -15.93342 -15.85894 -15.72599 -15.42961 -15.24091 -14.79864 -14.53601 -14.15474 -13.92246 -13.78199 -13.55881 -13.34548 -13.09297 -12.89627 -12.81337 -12.58873 -12.37423 -12.31601 -12.17229 -11.80835 -11.72366 -11.48210 -11.24835 -10.97237 -10.87748 -10.80299 -10.70371 -10.64181 -10.48484 -10.41568 -10.17043 -9.76809 -9.52384 -9.06080 -8.56138 -8.33809 -8.18270 -7.72946 -7.12034 -5.85569 -3.16820 1.38489 1.81024 1.89037 3.00168 3.06682 3.39119 3.44793 3.45400 3.56847 3.71810 4.24519 4.51578 4.70314 4.87344 5.04496 5.06118 5.15801 5.20584 5.23277 5.27801 5.40515 5.48287 5.50032 5.51857 5.54860 5.57268 5.59700 5.62704 5.68503 5.73817 5.76628 5.86981 5.97921 5.98584 5.98963 6.26563 6.33885 6.39857 6.45721 6.50585 6.60420 6.73217 6.74123 6.91991 6.93506 6.96797 7.17410 7.33590 7.66200 7.75704 8.00898 8.31215 8.65453 9.44027 9.94539 10.32061 11.35684 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007709 B = 0.003403 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3631.386515 B = 8225.110714 C =10718.667443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.122 4.122 3 C -0.116 4.116 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.123 4.123 7 C 0.513 3.487 8 O -0.554 6.554 9 N -0.713 5.713 10 C 0.125 3.875 11 C 0.208 3.792 12 H 0.070 0.930 13 N -0.716 5.716 14 C -0.242 4.242 15 H 0.070 0.930 16 C -0.005 4.005 17 N -0.929 5.929 18 Si 0.904 3.096 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.115 4.115 23 C -0.044 4.044 24 C -0.164 4.164 25 C -0.095 4.095 26 C -0.219 4.219 27 C 0.122 3.878 28 O -0.313 6.313 29 C 0.030 3.970 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.410 0.590 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.139 0.861 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.118 0.882 48 H 0.050 0.950 49 H 0.050 0.950 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.710 12.471 1.511 12.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.140 4.140 3 C -0.116 4.116 4 C -0.170 4.170 5 C -0.129 4.129 6 C -0.162 4.162 7 C 0.300 3.700 8 O -0.432 6.432 9 N -0.365 5.365 10 C 0.000 4.000 11 C 0.097 3.903 12 H 0.088 0.912 13 N -0.357 5.357 14 C -0.373 4.373 15 H 0.088 0.912 16 C -0.202 4.202 17 N -0.577 5.577 18 Si 0.735 3.265 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.119 4.119 23 C -0.062 4.062 24 C -0.182 4.182 25 C -0.113 4.113 26 C -0.238 4.238 27 C 0.076 3.924 28 O -0.227 6.227 29 C -0.066 4.066 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.246 0.754 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.221 0.779 43 H 0.066 0.934 44 H 0.157 0.843 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.136 0.864 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.696 12.986 1.231 13.320 hybrid contribution 0.448 -1.503 0.143 1.575 sum 3.144 11.483 1.374 11.984 Atomic orbital electron populations 1.24375 0.95736 1.01852 1.00609 1.22056 0.95436 0.96538 0.99953 1.20544 0.93919 0.94311 1.02815 1.20755 0.99975 0.94252 1.01978 1.22804 0.93936 0.97774 0.98380 1.20921 0.99234 0.98577 0.97448 1.20478 0.80073 0.82131 0.87361 1.90660 1.66899 1.38127 1.47542 1.45989 1.43629 1.20734 1.26118 1.21509 0.93190 0.97737 0.87569 1.19249 0.91177 0.87015 0.92848 0.91218 1.42478 1.09658 1.08954 1.74583 1.19150 0.95618 0.88957 1.33535 0.91193 1.24695 0.95697 0.98102 1.01662 1.69643 1.03392 1.32011 1.52635 0.86321 0.77289 0.83911 0.78957 1.21230 1.21748 1.21296 1.20424 0.92865 0.99665 0.98955 1.21036 1.00324 0.94279 0.90606 1.21067 0.95673 1.02918 0.98532 1.20779 0.95644 0.97288 0.97609 1.21049 1.01130 1.07184 0.94396 1.18944 0.93150 0.93751 0.86515 1.86086 1.32903 1.66880 1.36793 1.22958 0.83242 0.97552 1.02805 0.88342 0.88139 0.86162 0.91581 0.91757 0.91783 0.86315 0.87893 0.87712 0.75353 0.92000 0.91550 0.77881 0.93367 0.84341 0.86581 0.86776 0.86373 0.93107 0.93103 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 14.07 28.88 0.41 -1.60 16 2 C -0.12 -1.47 9.33 -37.83 -0.35 -1.83 16 3 C -0.12 -1.40 5.98 -102.87 -0.62 -2.01 16 4 C -0.11 -1.10 9.39 36.01 0.34 -0.76 16 5 C -0.11 -1.42 8.43 -36.16 -0.30 -1.73 16 6 C -0.12 -1.59 5.98 -29.03 -0.17 -1.76 16 7 C 0.51 8.53 7.82 -10.98 -0.09 8.45 16 8 O -0.55 -11.01 16.03 5.56 0.09 -10.92 16 9 N -0.71 -11.95 5.39 -60.29 -0.32 -12.27 16 10 C 0.12 2.24 5.21 -4.05 -0.02 2.22 16 11 C 0.21 4.02 2.38 -69.09 -0.16 3.85 16 12 H 0.07 1.41 7.63 -51.94 -0.40 1.01 16 13 N -0.72 -16.11 3.29 -54.56 -0.18 -16.29 16 14 C -0.24 -6.16 9.92 -15.06 -0.15 -6.31 16 15 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 16 C -0.01 -0.13 5.50 -17.43 -0.10 -0.23 16 17 N -0.93 -26.01 13.06 55.49 0.72 -25.29 16 18 Si 0.90 21.41 29.55 -169.99 -5.02 16.39 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 C -0.11 -2.16 5.04 -104.47 -0.53 -2.69 16 23 C -0.04 -0.84 9.32 -39.60 -0.37 -1.21 16 24 C -0.16 -2.68 10.04 -39.56 -0.40 -3.07 16 25 C -0.09 -1.40 10.04 -39.61 -0.40 -1.80 16 26 C -0.22 -3.27 9.04 -39.44 -0.36 -3.62 16 27 C 0.12 2.07 6.66 -39.22 -0.26 1.81 16 28 O -0.31 -4.89 9.63 -19.41 -0.19 -5.08 16 29 C 0.03 0.32 9.81 101.05 0.99 1.32 16 30 H 0.10 0.92 6.30 -52.49 -0.33 0.59 16 31 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.12 1.46 5.76 -52.49 -0.30 1.15 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.55 6.66 -51.93 -0.35 0.20 16 35 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 36 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.10 1.31 5.24 -51.92 -0.27 1.04 16 39 H 0.41 6.78 8.14 -40.82 -0.33 6.45 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 42 H 0.39 9.36 7.80 -40.82 -0.32 9.04 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.14 2.88 7.26 -52.49 -0.38 2.49 16 45 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 46 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 47 H 0.12 1.43 6.30 -52.48 -0.33 1.10 16 48 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 49 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 50 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 415.81 15.07 6.27 6.27 Total: -1.00 -30.53 415.81 -8.75 -39.28 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -7.58 Total: 18.88 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -2.54 Total: -10.97 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.22 Total: -53.85 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.10 Total: -16.00 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.53 -8.75 -39.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198834125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.267 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds