Wall clock time and date at job start Wed Apr 1 2020 03:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32869 * 1 3 3 C 1.47124 * 119.99672 * 2 1 4 4 C 1.50700 * 120.00290 * 5.03072 * 3 2 1 5 5 C 1.32869 * 119.99688 * 185.30925 * 3 2 1 6 6 C 1.50702 * 120.00243 * 354.71208 * 5 3 2 7 7 C 1.50704 * 109.47450 * 125.62804 * 6 5 3 8 8 O 1.21282 * 119.99829 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00083 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00256 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47369 * 179.97438 * 10 9 7 12 12 H 1.08989 * 109.47382 * 294.99960 * 11 10 9 13 13 N 1.46496 * 109.47090 * 55.00069 * 11 10 9 14 14 C 1.36942 * 120.00005 * 204.99939 * 13 11 10 15 15 H 1.07994 * 119.99750 * 0.02562 * 14 13 11 16 16 C 1.38812 * 119.99719 * 179.97438 * 14 13 11 17 17 N 1.31616 * 120.00382 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99678 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47189 * 59.99927 * 18 16 14 20 20 H 1.48495 * 109.47147 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47231 * 299.99973 * 18 16 14 22 22 C 1.50698 * 109.47129 * 174.99648 * 11 10 9 23 23 C 1.38170 * 120.03045 * 264.72852 * 22 11 10 24 24 C 1.38247 * 120.05287 * 179.77054 * 23 22 11 25 25 C 1.38284 * 120.11383 * 0.50175 * 24 23 22 26 26 C 1.38122 * 120.05579 * 359.75061 * 25 24 23 27 27 C 1.38718 * 120.02862 * 85.00192 * 22 11 10 28 28 O 1.35896 * 120.05040 * 359.97438 * 27 22 11 29 29 C 1.42906 * 116.99703 * 180.02562 * 28 27 22 30 30 H 1.07999 * 119.99790 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00165 * 180.02562 * 1 2 3 32 32 H 1.07994 * 120.00446 * 179.97438 * 2 1 3 33 33 H 1.09005 * 109.47041 * 270.27637 * 4 3 2 34 34 H 1.08998 * 109.46931 * 30.27935 * 4 3 2 35 35 H 1.09001 * 109.46854 * 150.28069 * 4 3 2 36 36 H 1.08001 * 120.00257 * 174.70649 * 5 3 2 37 37 H 1.08996 * 109.47080 * 245.63400 * 6 5 3 38 38 H 1.09007 * 109.47154 * 5.62947 * 6 5 3 39 39 H 0.97000 * 119.99922 * 359.97438 * 9 7 6 40 40 H 1.09001 * 109.46657 * 299.99798 * 10 9 7 41 41 H 1.09007 * 109.46996 * 59.99335 * 10 9 7 42 42 H 0.97007 * 120.00206 * 24.99335 * 13 11 10 43 43 H 0.97001 * 120.00208 * 179.97438 * 17 16 14 44 44 H 1.07999 * 119.97245 * 0.02562 * 23 22 11 45 45 H 1.08005 * 119.93899 * 180.24900 * 24 23 22 46 46 H 1.08000 * 119.97156 * 179.76771 * 25 24 23 47 47 H 1.08003 * 120.02634 * 180.02562 * 26 25 24 48 48 H 1.09000 * 109.47080 * 299.99774 * 29 28 27 49 49 H 1.08997 * 109.47035 * 60.00384 * 29 28 27 50 50 H 1.09001 * 109.46944 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2742 0.0000 4 6 1.3151 2.5768 0.1144 5 6 3.3887 1.2766 -0.1065 6 6 4.1470 -0.0256 -0.1072 7 6 5.0197 -0.0982 -1.3338 8 8 5.0249 0.8173 -2.1293 9 7 5.7935 -1.1808 -1.5472 10 6 6.6422 -1.2511 -2.7392 11 6 7.4120 -2.5733 -2.7400 12 1 8.0998 -2.5938 -1.8948 13 7 6.4680 -3.6880 -2.6285 14 6 6.8804 -4.8849 -2.1063 15 1 7.9014 -5.0069 -1.7763 16 6 5.9858 -5.9409 -2.0002 17 7 4.7413 -5.7921 -2.4020 18 14 6.5482 -7.5734 -1.2873 19 1 7.0269 -7.3676 0.1034 20 1 5.4121 -8.5297 -1.2839 21 1 7.6528 -8.1208 -2.1151 22 6 8.1902 -2.7007 -4.0241 23 6 7.6556 -3.3980 -5.0904 24 6 8.3671 -3.5112 -6.2703 25 6 9.6196 -2.9360 -6.3831 26 6 10.1607 -2.2423 -5.3183 27 6 9.4465 -2.1229 -4.1348 28 8 9.9766 -1.4409 -3.0857 29 6 11.2743 -0.8717 -3.2711 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8687 -0.9352 0.0004 33 1 1.0521 2.9334 -0.8815 34 1 0.4068 2.4235 0.6971 35 1 1.9446 3.3155 0.6104 36 1 3.9218 2.2119 -0.1926 37 1 4.7695 -0.0841 0.7856 38 1 3.4418 -0.8568 -0.1134 39 1 5.7890 -1.9131 -0.9111 40 1 6.0199 -1.1920 -3.6322 41 1 7.3478 -0.4202 -2.7324 42 1 5.5507 -3.5783 -2.9245 43 1 4.1162 -6.5302 -2.3282 44 1 6.6793 -3.8515 -5.0035 45 1 7.9457 -4.0532 -7.1040 46 1 10.1750 -3.0290 -7.3047 47 1 11.1388 -1.7930 -5.4071 48 1 11.9891 -1.6629 -3.4974 49 1 11.2448 -0.1614 -4.0973 50 1 11.5789 -0.3571 -2.3598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198834125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:29 Heat of formation + Delta-G solvation = -20.270097 kcal Electronic energy + Delta-G solvation = -29826.820497 eV Core-core repulsion = 25819.832129 eV Total energy + Delta-G solvation = -4006.988368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.24708 -40.64064 -38.53534 -37.86719 -37.22989 -35.18355 -33.73836 -32.86355 -31.33703 -31.01812 -30.86543 -29.02712 -27.97611 -26.47905 -25.42037 -24.11531 -22.82593 -22.73314 -21.58188 -21.28168 -19.34677 -18.87227 -18.49348 -17.98926 -17.32279 -17.18234 -16.85882 -16.58107 -16.46285 -16.24359 -15.90693 -15.44399 -15.35068 -15.17080 -14.85913 -14.61185 -14.38527 -14.18832 -14.09514 -13.77934 -13.50584 -13.42482 -13.26729 -12.94371 -12.82748 -12.79686 -12.70873 -12.52599 -12.39721 -12.26749 -12.06098 -11.92054 -11.84900 -11.61216 -11.54518 -11.33290 -11.03053 -10.84925 -10.02562 -9.67619 -9.12603 -9.07469 -8.95209 -7.90273 -5.20080 0.45319 0.51705 0.60378 1.49996 1.51211 1.56839 1.68483 2.07164 2.42278 2.49804 2.57870 2.93764 3.42993 3.76289 3.77041 3.89068 3.98745 4.01672 4.10868 4.14816 4.24173 4.30569 4.38952 4.41119 4.45443 4.46321 4.59020 4.61681 4.63091 4.69373 4.76013 4.77607 4.81702 4.84409 4.92524 4.94744 5.04990 5.16950 5.21642 5.44480 5.48121 5.48827 5.57219 5.60557 5.63112 5.82859 5.83051 6.01535 6.05007 6.29266 6.58098 6.62954 7.28467 7.37816 8.04072 8.33457 9.31279 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007709 B = 0.003403 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3631.386515 B = 8225.110714 C =10718.667443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.152 4.152 3 C -0.110 4.110 4 C -0.114 4.114 5 C -0.135 4.135 6 C -0.113 4.113 7 C 0.511 3.489 8 O -0.588 6.588 9 N -0.711 5.711 10 C 0.139 3.861 11 C 0.219 3.781 12 H 0.061 0.939 13 N -0.717 5.717 14 C -0.231 4.231 15 H 0.068 0.932 16 C -0.057 4.057 17 N -0.960 5.960 18 Si 0.961 3.039 19 H -0.278 1.278 20 H -0.298 1.298 21 H -0.287 1.287 22 C -0.143 4.143 23 C -0.068 4.068 24 C -0.172 4.172 25 C -0.086 4.086 26 C -0.214 4.214 27 C 0.116 3.884 28 O -0.333 6.333 29 C 0.019 3.981 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.109 0.891 39 H 0.412 0.588 40 H 0.044 0.956 41 H 0.068 0.932 42 H 0.376 0.624 43 H 0.250 0.750 44 H 0.107 0.893 45 H 0.132 0.868 46 H 0.153 0.847 47 H 0.153 0.847 48 H 0.063 0.937 49 H 0.066 0.934 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 13.290 1.552 14.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C -0.110 4.110 4 C -0.170 4.170 5 C -0.154 4.154 6 C -0.152 4.152 7 C 0.300 3.700 8 O -0.469 6.469 9 N -0.363 5.363 10 C 0.013 3.987 11 C 0.109 3.891 12 H 0.079 0.921 13 N -0.357 5.357 14 C -0.363 4.363 15 H 0.086 0.914 16 C -0.250 4.250 17 N -0.610 5.610 18 Si 0.791 3.209 19 H -0.204 1.204 20 H -0.224 1.224 21 H -0.214 1.214 22 C -0.147 4.147 23 C -0.086 4.086 24 C -0.190 4.190 25 C -0.104 4.104 26 C -0.232 4.232 27 C 0.071 3.929 28 O -0.247 6.247 29 C -0.075 4.075 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.127 0.873 39 H 0.248 0.752 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.209 0.791 43 H 0.059 0.941 44 H 0.125 0.875 45 H 0.150 0.850 46 H 0.170 0.830 47 H 0.171 0.829 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.206 13.827 1.289 14.510 hybrid contribution 0.045 -1.660 0.083 1.663 sum 4.252 12.167 1.372 12.961 Atomic orbital electron populations 1.24632 0.95264 1.03110 0.97825 1.22141 0.96214 0.96416 1.02227 1.20838 0.93836 0.95347 1.00977 1.20822 1.00539 0.93238 1.02449 1.22785 0.94412 0.97423 1.00735 1.20917 0.98882 0.99111 0.96270 1.21157 0.79709 0.81176 0.88007 1.90632 1.67996 1.39266 1.49027 1.46006 1.43600 1.20992 1.25669 1.21277 0.92828 0.97095 0.87455 1.19174 0.90409 0.86299 0.93190 0.92115 1.42444 1.09659 1.09129 1.74441 1.19344 0.95221 0.89809 1.31916 0.91439 1.25296 0.95886 1.00829 1.03032 1.69782 1.04279 1.32379 1.54599 0.85416 0.76405 0.80546 0.78556 1.20376 1.22428 1.21355 1.20263 0.94280 1.01675 0.98474 1.20887 0.99764 0.95648 0.92323 1.21285 0.96495 1.03320 0.97928 1.21211 0.94750 0.95455 0.98937 1.21453 1.02178 1.06312 0.93274 1.19004 0.92622 0.93601 0.87716 1.86058 1.35170 1.66791 1.36716 1.23308 0.81279 0.98225 1.04689 0.86733 0.87242 0.86912 0.91439 0.90252 0.90781 0.86581 0.85544 0.87289 0.75163 0.93798 0.91355 0.79109 0.94101 0.87484 0.85024 0.82952 0.82921 0.91863 0.91587 0.86723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 14.07 66.64 0.94 -2.43 16 2 C -0.15 -3.59 9.33 23.43 0.22 -3.37 16 3 C -0.11 -2.59 5.98 -18.71 -0.11 -2.70 16 4 C -0.11 -2.05 9.39 71.24 0.67 -1.39 16 5 C -0.14 -3.48 8.43 24.51 0.21 -3.27 16 6 C -0.11 -2.95 5.98 29.10 0.17 -2.77 16 7 C 0.51 17.50 7.82 87.66 0.69 18.18 16 8 O -0.59 -24.12 16.03 -3.04 -0.05 -24.17 16 9 N -0.71 -24.78 5.39 -463.06 -2.49 -27.27 16 10 C 0.14 5.21 5.21 86.38 0.45 5.66 16 11 C 0.22 8.78 2.38 44.24 0.11 8.88 16 12 H 0.06 2.53 7.63 -2.39 -0.02 2.51 16 13 N -0.72 -33.68 3.29 -326.53 -1.07 -34.75 16 14 C -0.23 -12.07 9.92 84.03 0.83 -11.23 16 15 H 0.07 3.51 7.83 -2.91 -0.02 3.49 16 16 C -0.06 -3.11 5.50 84.86 0.47 -2.64 16 17 N -0.96 -55.42 13.06 21.65 0.28 -55.13 16 18 Si 0.96 44.62 29.55 68.60 2.03 46.65 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 C -0.14 -5.50 5.04 -19.77 -0.10 -5.60 16 23 C -0.07 -2.65 9.32 22.26 0.21 -2.44 16 24 C -0.17 -5.50 10.04 22.28 0.22 -5.27 16 25 C -0.09 -2.27 10.04 22.25 0.22 -2.05 16 26 C -0.21 -5.76 9.04 22.36 0.20 -5.56 16 27 C 0.12 3.83 6.66 22.51 0.15 3.98 16 28 O -0.33 -10.00 9.63 -92.38 -0.89 -10.89 16 29 C 0.02 0.36 9.81 113.37 1.11 1.48 16 30 H 0.11 1.85 6.30 -2.91 -0.02 1.83 16 31 H 0.11 1.94 8.06 -2.91 -0.02 1.91 16 32 H 0.11 2.77 5.76 -2.91 -0.02 2.75 16 33 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.08 1.17 6.66 -2.39 -0.02 1.16 16 35 H 0.07 1.18 8.07 -2.39 -0.02 1.16 16 36 H 0.12 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.11 2.78 5.24 -2.38 -0.01 2.76 16 39 H 0.41 14.12 8.14 -92.71 -0.75 13.37 16 40 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 42 H 0.38 19.23 7.80 -92.70 -0.72 18.51 16 43 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 44 H 0.11 4.78 7.26 -2.91 -0.02 4.76 16 45 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 46 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 47 H 0.15 3.01 6.30 -2.91 -0.02 2.99 16 48 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 49 H 0.07 1.05 7.66 -2.39 -0.02 1.03 16 50 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -67.67 415.81 3.94 -63.73 By element: Atomic # 1 Polarization: 54.92 SS G_CDS: -0.52 Total: 54.40 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 6.65 Total: -12.55 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -3.29 Total: -117.16 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.94 Total: -35.07 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -67.67 3.94 -63.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198834125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.456 kcal (2) G-P(sol) polarization free energy of solvation -67.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds