Wall clock time and date at job start Wed Apr 1 2020 03:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32877 * 1 3 3 C 1.47117 * 119.99915 * 2 1 4 4 C 1.50696 * 120.00148 * 0.02562 * 3 2 1 5 5 C 1.32865 * 119.99748 * 180.02562 * 3 2 1 6 6 C 1.50704 * 119.99914 * 174.08878 * 5 3 2 7 7 C 1.50706 * 109.46828 * 234.27672 * 6 5 3 8 8 O 1.21280 * 120.00093 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99664 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99739 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47269 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47363 * 294.99985 * 11 10 9 13 13 N 1.46504 * 109.47075 * 54.99554 * 11 10 9 14 14 C 1.36942 * 119.99816 * 205.00169 * 13 11 10 15 15 H 1.07991 * 119.99967 * 0.02562 * 14 13 11 16 16 C 1.38815 * 119.99405 * 180.02562 * 14 13 11 17 17 N 1.31618 * 119.99568 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00256 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.46866 * 90.00130 * 18 16 14 20 20 H 1.48501 * 109.46856 * 209.99930 * 18 16 14 21 21 H 1.48498 * 109.47153 * 330.00197 * 18 16 14 22 22 C 1.50700 * 109.47448 * 174.99856 * 11 10 9 23 23 C 1.38167 * 120.02839 * 264.98004 * 22 11 10 24 24 C 1.38245 * 120.05517 * 180.02562 * 23 22 11 25 25 C 1.38281 * 120.11121 * 0.02562 * 24 23 22 26 26 C 1.38120 * 120.05754 * 359.95722 * 25 24 23 27 27 C 1.38711 * 120.02772 * 84.99759 * 22 11 10 28 28 O 1.35904 * 120.05605 * 359.70815 * 27 22 11 29 29 C 1.42897 * 117.00024 * 180.02562 * 28 27 22 30 30 H 1.07998 * 119.99845 * 359.97438 * 1 2 3 31 31 H 1.07998 * 119.99709 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.99845 * 180.02562 * 2 1 3 33 33 H 1.09007 * 109.47220 * 265.16375 * 4 3 2 34 34 H 1.09006 * 109.47175 * 25.15994 * 4 3 2 35 35 H 1.08997 * 109.47722 * 145.16144 * 4 3 2 36 36 H 1.08000 * 120.00158 * 354.08005 * 5 3 2 37 37 H 1.08992 * 109.47458 * 114.27919 * 6 5 3 38 38 H 1.08997 * 109.47161 * 354.27271 * 6 5 3 39 39 H 0.97000 * 120.00475 * 359.97438 * 9 7 6 40 40 H 1.09001 * 109.47555 * 59.99565 * 10 9 7 41 41 H 1.09003 * 109.47200 * 299.99440 * 10 9 7 42 42 H 0.96995 * 119.99935 * 25.00749 * 13 11 10 43 43 H 0.97001 * 119.99738 * 180.02562 * 17 16 14 44 44 H 1.07998 * 119.96807 * 0.03523 * 23 22 11 45 45 H 1.07995 * 119.93993 * 179.97438 * 24 23 22 46 46 H 1.07997 * 119.97053 * 179.97438 * 25 24 23 47 47 H 1.08003 * 120.02831 * 180.02562 * 26 25 24 48 48 H 1.08994 * 109.46955 * 299.99535 * 29 28 27 49 49 H 1.09002 * 109.46993 * 59.99624 * 29 28 27 50 50 H 1.08995 * 109.47059 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3109 2.5792 0.0006 5 6 3.3930 1.2740 -0.0005 6 6 4.1465 2.5723 -0.1349 7 6 5.1156 2.4738 -1.2848 8 8 5.1877 1.4501 -1.9312 9 7 5.9029 3.5230 -1.5942 10 6 6.8455 3.4271 -2.7117 11 6 7.6104 4.7451 -2.8483 12 1 6.9176 5.5405 -3.1229 13 7 8.2495 5.0734 -1.5715 14 6 8.5425 6.3761 -1.2676 15 1 8.3022 7.1614 -1.9689 16 6 9.1485 6.6871 -0.0580 17 7 9.4298 7.9392 0.2343 18 14 9.5635 5.3287 1.1553 19 1 10.9332 4.8233 0.8831 20 1 9.4994 5.8643 2.5388 21 1 8.5880 4.2187 1.0083 22 6 8.6643 4.6059 -3.9164 23 6 9.9596 4.2721 -3.5704 24 6 10.9270 4.1449 -4.5498 25 6 10.6013 4.3516 -5.8777 26 6 9.3077 4.6851 -6.2288 27 6 8.3349 4.8131 -5.2478 28 8 7.0602 5.1360 -5.5913 29 6 6.7932 5.3344 -6.9810 30 1 -0.5400 0.9353 0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8687 -0.9353 -0.0004 33 1 1.2038 2.9374 -1.0234 34 1 0.3238 2.4286 0.4379 35 1 1.8598 3.3155 0.5876 36 1 3.9330 0.3437 0.0955 37 1 4.6944 2.7714 0.7859 38 1 3.4426 3.3833 -0.3215 39 1 5.8456 4.3416 -1.0771 40 1 6.2979 3.2280 -3.6329 41 1 7.5492 2.6159 -2.5248 42 1 8.4650 4.3681 -0.9415 43 1 9.8536 8.1564 1.0794 44 1 10.2165 4.1104 -2.5340 45 1 11.9390 3.8843 -4.2772 46 1 11.3589 4.2520 -6.6408 47 1 9.0537 4.8461 -7.2661 48 1 7.4130 6.1480 -7.3575 49 1 7.0216 4.4201 -7.5289 50 1 5.7414 5.5857 -7.1167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198834127.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:40 Heat of formation + Delta-G solvation = -0.293411 kcal Electronic energy + Delta-G solvation = -29817.386722 eV Core-core repulsion = 25811.264608 eV Total energy + Delta-G solvation = -4006.122114 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.05179 -39.44405 -37.37076 -36.96248 -35.92853 -33.62918 -32.59472 -32.01079 -30.18657 -29.78000 -29.15651 -27.81625 -27.06198 -26.35298 -23.60504 -22.77787 -21.62478 -21.29322 -20.17937 -19.83262 -18.02682 -17.92343 -17.68190 -16.91289 -16.17480 -15.92582 -15.86103 -15.44980 -15.25237 -14.99882 -14.48746 -14.24807 -14.03821 -13.95858 -13.62295 -13.41652 -13.28510 -12.98554 -12.86241 -12.82189 -12.52722 -12.40945 -12.25987 -11.78797 -11.70668 -11.57257 -11.39096 -11.14684 -10.97837 -10.93890 -10.87098 -10.81146 -10.62571 -10.56518 -10.20735 -9.67444 -9.65775 -9.11293 -8.72729 -8.41967 -8.29697 -7.79259 -7.43436 -5.85309 -3.24000 1.23588 1.73674 1.82553 2.86554 2.91019 3.28802 3.32623 3.39296 3.52698 3.58708 4.16668 4.49537 4.57617 4.74899 4.97294 4.99102 5.04415 5.11241 5.21351 5.21869 5.24122 5.30012 5.33172 5.38634 5.43471 5.45187 5.51702 5.54509 5.59405 5.60391 5.73236 5.78361 5.81039 5.87196 5.88870 6.14508 6.16389 6.24254 6.34663 6.36614 6.50120 6.58494 6.65869 6.77342 6.83688 6.83989 7.06587 7.21605 7.69772 7.84626 7.90270 8.32539 8.49964 9.09174 9.80360 9.98825 11.32501 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008224 B = 0.003305 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3403.886354 B = 8469.003756 C =10748.326498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.118 4.118 4 C -0.123 4.123 5 C -0.109 4.109 6 C -0.121 4.121 7 C 0.515 3.485 8 O -0.550 6.550 9 N -0.717 5.717 10 C 0.121 3.879 11 C 0.215 3.785 12 H 0.079 0.921 13 N -0.741 5.741 14 C -0.245 4.245 15 H 0.092 0.908 16 C 0.012 3.988 17 N -0.929 5.929 18 Si 0.877 3.123 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.276 1.276 22 C -0.114 4.114 23 C -0.047 4.047 24 C -0.162 4.162 25 C -0.092 4.092 26 C -0.216 4.216 27 C 0.125 3.875 28 O -0.313 6.313 29 C 0.030 3.970 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.410 0.590 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.363 0.637 43 H 0.260 0.740 44 H 0.131 0.869 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.120 0.880 48 H 0.052 0.948 49 H 0.050 0.950 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.619 -10.459 -7.316 16.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.179 4.179 5 C -0.127 4.127 6 C -0.161 4.161 7 C 0.301 3.699 8 O -0.428 6.428 9 N -0.369 5.369 10 C -0.003 4.003 11 C 0.104 3.896 12 H 0.097 0.903 13 N -0.383 5.383 14 C -0.374 4.374 15 H 0.110 0.890 16 C -0.185 4.185 17 N -0.576 5.576 18 Si 0.707 3.293 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.202 1.202 22 C -0.118 4.118 23 C -0.065 4.065 24 C -0.181 4.181 25 C -0.111 4.111 26 C -0.235 4.235 27 C 0.080 3.920 28 O -0.226 6.226 29 C -0.066 4.066 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.246 0.754 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.196 0.804 43 H 0.070 0.930 44 H 0.149 0.851 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.138 0.862 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.716 -10.869 -7.633 17.065 hybrid contribution 0.777 -0.390 0.799 1.180 sum -9.939 -11.260 -6.834 16.501 Atomic orbital electron populations 1.24374 0.95702 1.01897 1.01208 1.21863 0.95280 0.96103 0.99550 1.20526 0.93889 0.94334 1.03043 1.20893 1.00123 0.94598 1.02322 1.22806 0.93828 0.97854 0.98229 1.20829 0.98422 0.98306 0.98516 1.20425 0.81056 0.83346 0.85107 1.90672 1.69122 1.29965 1.53051 1.46020 1.39326 1.17167 1.34392 1.21576 0.91356 0.98163 0.89241 1.19205 0.91040 0.94383 0.84958 0.90334 1.42854 1.73210 1.06305 1.15980 1.19022 1.33431 0.83121 1.01873 0.89049 1.24641 1.00607 0.95608 0.97606 1.69692 1.47420 1.16089 1.24354 0.86681 0.78623 0.82136 0.81821 1.21030 1.21697 1.20207 1.20257 0.97199 1.02772 0.91574 1.20895 0.91329 0.94497 0.99771 1.21041 0.99494 1.04552 0.92967 1.20786 0.95338 0.98729 0.96214 1.21070 0.94364 1.09675 0.98395 1.18896 0.83351 0.96414 0.93356 1.86085 1.25828 1.84602 1.26107 1.22970 1.02225 1.00540 0.80837 0.88073 0.88317 0.86911 0.91400 0.91599 0.91185 0.86465 0.87725 0.87894 0.75373 0.91053 0.91952 0.80350 0.92961 0.85083 0.86509 0.86629 0.86212 0.92974 0.93094 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 14.11 28.88 0.41 -1.27 16 2 C -0.11 -1.12 9.83 -37.83 -0.37 -1.49 16 3 C -0.12 -1.30 5.98 -102.88 -0.62 -1.91 16 4 C -0.12 -1.13 8.54 36.00 0.31 -0.82 16 5 C -0.11 -1.32 8.45 -36.16 -0.31 -1.63 16 6 C -0.12 -1.45 5.77 -29.03 -0.17 -1.62 16 7 C 0.51 8.01 7.82 -10.98 -0.09 7.93 16 8 O -0.55 -10.36 16.03 5.56 0.09 -10.27 16 9 N -0.72 -11.25 5.39 -60.29 -0.32 -11.57 16 10 C 0.12 2.04 5.22 -4.04 -0.02 2.02 16 11 C 0.21 3.97 2.38 -69.08 -0.16 3.80 16 12 H 0.08 1.55 7.63 -51.93 -0.40 1.15 16 13 N -0.74 -15.75 3.10 -54.55 -0.17 -15.92 16 14 C -0.24 -6.33 10.40 -15.06 -0.16 -6.49 16 15 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 16 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 17 N -0.93 -27.78 13.97 55.49 0.78 -27.00 16 18 Si 0.88 20.70 27.74 -169.99 -4.71 15.99 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.05 6.52 56.52 0.37 -5.68 16 22 C -0.11 -2.07 5.04 -104.47 -0.53 -2.60 16 23 C -0.05 -0.84 9.32 -39.60 -0.37 -1.21 16 24 C -0.16 -2.55 10.04 -39.56 -0.40 -2.95 16 25 C -0.09 -1.32 10.04 -39.61 -0.40 -1.72 16 26 C -0.22 -3.14 9.04 -39.43 -0.36 -3.50 16 27 C 0.13 2.07 6.66 -39.22 -0.26 1.81 16 28 O -0.31 -4.79 9.64 -19.44 -0.19 -4.98 16 29 C 0.03 0.32 9.81 101.05 0.99 1.31 16 30 H 0.10 0.79 6.06 -52.49 -0.32 0.48 16 31 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.52 6.20 -51.93 -0.32 0.20 16 35 H 0.07 0.59 6.70 -51.93 -0.35 0.24 16 36 H 0.12 1.48 8.05 -52.49 -0.42 1.06 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.10 1.05 5.79 -51.93 -0.30 0.75 16 39 H 0.41 6.27 8.14 -40.82 -0.33 5.93 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.36 7.69 5.66 -40.82 -0.23 7.46 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.13 2.49 7.26 -52.49 -0.38 2.11 16 45 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.12 1.41 6.30 -52.48 -0.33 1.08 16 48 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 49 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 50 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 412.98 15.07 6.22 6.22 Total: -1.00 -32.14 412.98 -8.47 -40.61 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -7.57 Total: 17.02 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -2.59 Total: -10.11 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.28 Total: -54.49 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.10 Total: -15.25 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.71 Total: 15.99 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.14 -8.47 -40.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198834127.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.319 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds