Wall clock time and date at job start Wed Apr 1 2020 03:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32877 * 1 3 3 C 1.47117 * 119.99915 * 2 1 4 4 C 1.50696 * 120.00148 * 0.02562 * 3 2 1 5 5 C 1.32865 * 119.99748 * 180.02562 * 3 2 1 6 6 C 1.50704 * 119.99914 * 174.08878 * 5 3 2 7 7 C 1.50706 * 109.46828 * 234.27672 * 6 5 3 8 8 O 1.21280 * 120.00093 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99664 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99739 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47269 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47363 * 294.99985 * 11 10 9 13 13 N 1.46504 * 109.47075 * 54.99554 * 11 10 9 14 14 C 1.36942 * 119.99816 * 205.00169 * 13 11 10 15 15 H 1.07991 * 119.99967 * 0.02562 * 14 13 11 16 16 C 1.38815 * 119.99405 * 180.02562 * 14 13 11 17 17 N 1.31618 * 119.99568 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00256 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.46866 * 90.00130 * 18 16 14 20 20 H 1.48501 * 109.46856 * 209.99930 * 18 16 14 21 21 H 1.48498 * 109.47153 * 330.00197 * 18 16 14 22 22 C 1.50700 * 109.47448 * 174.99856 * 11 10 9 23 23 C 1.38167 * 120.02839 * 264.98004 * 22 11 10 24 24 C 1.38245 * 120.05517 * 180.02562 * 23 22 11 25 25 C 1.38281 * 120.11121 * 0.02562 * 24 23 22 26 26 C 1.38120 * 120.05754 * 359.95722 * 25 24 23 27 27 C 1.38711 * 120.02772 * 84.99759 * 22 11 10 28 28 O 1.35904 * 120.05605 * 359.70815 * 27 22 11 29 29 C 1.42897 * 117.00024 * 180.02562 * 28 27 22 30 30 H 1.07998 * 119.99845 * 359.97438 * 1 2 3 31 31 H 1.07998 * 119.99709 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.99845 * 180.02562 * 2 1 3 33 33 H 1.09007 * 109.47220 * 265.16375 * 4 3 2 34 34 H 1.09006 * 109.47175 * 25.15994 * 4 3 2 35 35 H 1.08997 * 109.47722 * 145.16144 * 4 3 2 36 36 H 1.08000 * 120.00158 * 354.08005 * 5 3 2 37 37 H 1.08992 * 109.47458 * 114.27919 * 6 5 3 38 38 H 1.08997 * 109.47161 * 354.27271 * 6 5 3 39 39 H 0.97000 * 120.00475 * 359.97438 * 9 7 6 40 40 H 1.09001 * 109.47555 * 59.99565 * 10 9 7 41 41 H 1.09003 * 109.47200 * 299.99440 * 10 9 7 42 42 H 0.96995 * 119.99935 * 25.00749 * 13 11 10 43 43 H 0.97001 * 119.99738 * 180.02562 * 17 16 14 44 44 H 1.07998 * 119.96807 * 0.03523 * 23 22 11 45 45 H 1.07995 * 119.93993 * 179.97438 * 24 23 22 46 46 H 1.07997 * 119.97053 * 179.97438 * 25 24 23 47 47 H 1.08003 * 120.02831 * 180.02562 * 26 25 24 48 48 H 1.08994 * 109.46955 * 299.99535 * 29 28 27 49 49 H 1.09002 * 109.46993 * 59.99624 * 29 28 27 50 50 H 1.08995 * 109.47059 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3109 2.5792 0.0006 5 6 3.3930 1.2740 -0.0005 6 6 4.1465 2.5723 -0.1349 7 6 5.1156 2.4738 -1.2848 8 8 5.1877 1.4501 -1.9312 9 7 5.9029 3.5230 -1.5942 10 6 6.8455 3.4271 -2.7117 11 6 7.6104 4.7451 -2.8483 12 1 6.9176 5.5405 -3.1229 13 7 8.2495 5.0734 -1.5715 14 6 8.5425 6.3761 -1.2676 15 1 8.3022 7.1614 -1.9689 16 6 9.1485 6.6871 -0.0580 17 7 9.4298 7.9392 0.2343 18 14 9.5635 5.3287 1.1553 19 1 10.9332 4.8233 0.8831 20 1 9.4994 5.8643 2.5388 21 1 8.5880 4.2187 1.0083 22 6 8.6643 4.6059 -3.9164 23 6 9.9596 4.2721 -3.5704 24 6 10.9270 4.1449 -4.5498 25 6 10.6013 4.3516 -5.8777 26 6 9.3077 4.6851 -6.2288 27 6 8.3349 4.8131 -5.2478 28 8 7.0602 5.1360 -5.5913 29 6 6.7932 5.3344 -6.9810 30 1 -0.5400 0.9353 0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8687 -0.9353 -0.0004 33 1 1.2038 2.9374 -1.0234 34 1 0.3238 2.4286 0.4379 35 1 1.8598 3.3155 0.5876 36 1 3.9330 0.3437 0.0955 37 1 4.6944 2.7714 0.7859 38 1 3.4426 3.3833 -0.3215 39 1 5.8456 4.3416 -1.0771 40 1 6.2979 3.2280 -3.6329 41 1 7.5492 2.6159 -2.5248 42 1 8.4650 4.3681 -0.9415 43 1 9.8536 8.1564 1.0794 44 1 10.2165 4.1104 -2.5340 45 1 11.9390 3.8843 -4.2772 46 1 11.3589 4.2520 -6.6408 47 1 9.0537 4.8461 -7.2661 48 1 7.4130 6.1480 -7.3575 49 1 7.0216 4.4201 -7.5289 50 1 5.7414 5.5857 -7.1167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198834127.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:38 Heat of formation + Delta-G solvation = -19.571794 kcal Electronic energy + Delta-G solvation = -29818.222695 eV Core-core repulsion = 25811.264608 eV Total energy + Delta-G solvation = -4006.958087 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.28752 -40.67327 -38.60433 -37.86908 -37.32609 -35.23449 -33.87254 -33.32120 -31.83337 -30.98172 -30.14880 -28.95349 -28.00976 -27.34248 -25.32005 -24.23053 -22.84145 -22.26196 -21.61727 -20.97579 -19.84725 -18.88770 -18.77505 -18.08343 -17.37472 -17.25342 -16.96761 -16.62312 -16.44889 -16.28651 -16.02782 -15.47983 -15.24307 -15.05796 -14.88753 -14.58328 -14.54671 -14.34359 -14.14043 -14.08443 -13.74863 -13.52435 -13.29844 -13.01095 -12.92220 -12.76895 -12.53898 -12.47821 -12.36281 -12.30375 -11.99957 -11.91554 -11.81145 -11.74420 -11.69839 -11.39238 -11.09320 -10.89339 -10.07883 -9.72060 -9.37533 -9.11853 -8.99267 -7.98360 -5.34148 0.42545 0.49319 0.58921 1.40007 1.42118 1.49173 1.65230 2.04296 2.40664 2.48388 2.49683 2.91332 3.33250 3.45563 3.74312 3.88354 3.93377 4.00585 4.05523 4.11341 4.26398 4.31244 4.35749 4.37791 4.43025 4.44260 4.45680 4.56092 4.59813 4.60923 4.74239 4.76251 4.80053 4.87536 4.88811 4.99418 5.00601 5.13506 5.18368 5.41919 5.45487 5.48335 5.59480 5.59969 5.74639 5.79469 5.82813 5.98478 6.04344 6.23796 6.55920 6.58712 7.07829 7.24815 7.79265 8.01483 9.22980 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008224 B = 0.003305 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3403.886354 B = 8469.003756 C =10748.326498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.143 4.143 3 C -0.108 4.108 4 C -0.126 4.126 5 C -0.139 4.139 6 C -0.111 4.111 7 C 0.513 3.487 8 O -0.585 6.585 9 N -0.716 5.716 10 C 0.135 3.865 11 C 0.224 3.776 12 H 0.063 0.937 13 N -0.736 5.736 14 C -0.216 4.216 15 H 0.054 0.946 16 C -0.050 4.050 17 N -0.981 5.981 18 Si 0.943 3.057 19 H -0.285 1.285 20 H -0.298 1.298 21 H -0.249 1.249 22 C -0.144 4.144 23 C -0.071 4.071 24 C -0.171 4.171 25 C -0.086 4.086 26 C -0.214 4.214 27 C 0.116 3.884 28 O -0.334 6.334 29 C 0.019 3.981 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.413 0.587 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.366 0.634 43 H 0.257 0.743 44 H 0.113 0.887 45 H 0.135 0.865 46 H 0.153 0.847 47 H 0.152 0.848 48 H 0.061 0.939 49 H 0.067 0.933 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.785 -11.792 -8.471 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.108 4.108 4 C -0.183 4.183 5 C -0.158 4.158 6 C -0.150 4.150 7 C 0.301 3.699 8 O -0.466 6.466 9 N -0.368 5.368 10 C 0.010 3.990 11 C 0.115 3.885 12 H 0.081 0.919 13 N -0.378 5.378 14 C -0.347 4.347 15 H 0.072 0.928 16 C -0.242 4.242 17 N -0.631 5.631 18 Si 0.771 3.229 19 H -0.212 1.212 20 H -0.225 1.225 21 H -0.173 1.173 22 C -0.148 4.148 23 C -0.089 4.089 24 C -0.189 4.189 25 C -0.104 4.104 26 C -0.232 4.232 27 C 0.071 3.929 28 O -0.248 6.248 29 C -0.075 4.075 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.250 0.750 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.200 0.800 43 H 0.066 0.934 44 H 0.131 0.869 45 H 0.153 0.847 46 H 0.170 0.830 47 H 0.170 0.830 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.915 -12.238 -8.825 19.226 hybrid contribution 0.995 0.016 0.947 1.374 sum -10.920 -12.221 -7.878 18.185 Atomic orbital electron populations 1.24655 0.95122 1.03262 0.97854 1.21973 0.96102 0.95912 1.02134 1.20825 0.93729 0.95557 1.00667 1.20977 1.00811 0.93743 1.02724 1.22712 0.94383 0.97391 1.01293 1.20809 0.97904 0.98999 0.97267 1.21087 0.80933 0.82398 0.85460 1.90650 1.70187 1.31226 1.54503 1.46040 1.39180 1.17489 1.34072 1.21343 0.91161 0.96738 0.89752 1.19130 0.90924 0.94564 0.83890 0.91936 1.42675 1.73355 1.04540 1.17279 1.18818 1.31302 0.84091 1.00499 0.92752 1.25303 1.01518 0.97689 0.99719 1.69866 1.49656 1.18586 1.24980 0.85601 0.78719 0.79920 0.78635 1.21178 1.22516 1.17336 1.20164 0.97062 1.05089 0.92446 1.20891 0.92132 0.96229 0.99646 1.21305 0.99849 1.04373 0.93387 1.21226 0.96090 0.96733 0.96305 1.21461 0.93959 1.08281 0.99522 1.19011 0.84457 0.96294 0.93185 1.86055 1.25282 1.84449 1.28987 1.23303 1.03740 1.01749 0.78691 0.87005 0.86648 0.87102 0.91225 0.90106 0.90340 0.87893 0.86339 0.85940 0.75039 0.91093 0.92687 0.79977 0.93436 0.86916 0.84691 0.82981 0.83030 0.92027 0.91429 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 14.11 66.64 0.94 -1.60 16 2 C -0.14 -2.75 9.83 23.43 0.23 -2.52 16 3 C -0.11 -2.25 5.98 -18.71 -0.11 -2.36 16 4 C -0.13 -2.04 8.54 71.23 0.61 -1.44 16 5 C -0.14 -3.34 8.45 24.51 0.21 -3.13 16 6 C -0.11 -2.54 5.77 29.11 0.17 -2.37 16 7 C 0.51 15.88 7.82 87.66 0.69 16.56 16 8 O -0.58 -22.29 16.03 -3.03 -0.05 -22.34 16 9 N -0.72 -22.39 5.39 -463.05 -2.49 -24.89 16 10 C 0.14 4.61 5.22 86.38 0.45 5.06 16 11 C 0.22 8.50 2.38 44.24 0.11 8.60 16 12 H 0.06 2.56 7.63 -2.39 -0.02 2.54 16 13 N -0.74 -31.81 3.10 -326.49 -1.01 -32.82 16 14 C -0.22 -11.54 10.40 84.03 0.87 -10.66 16 15 H 0.05 3.28 8.06 -2.92 -0.02 3.25 16 16 C -0.05 -2.82 5.50 84.86 0.47 -2.36 16 17 N -0.98 -60.62 13.97 21.65 0.30 -60.32 16 18 Si 0.94 43.38 27.74 68.60 1.90 45.28 16 19 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 20 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 21 H -0.25 -10.19 6.52 99.48 0.65 -9.54 16 22 C -0.14 -5.31 5.04 -19.77 -0.10 -5.41 16 23 C -0.07 -2.58 9.32 22.25 0.21 -2.37 16 24 C -0.17 -5.18 10.04 22.28 0.22 -4.95 16 25 C -0.09 -2.21 10.04 22.25 0.22 -1.98 16 26 C -0.21 -5.69 9.04 22.36 0.20 -5.48 16 27 C 0.12 3.77 6.66 22.51 0.15 3.92 16 28 O -0.33 -9.98 9.64 -92.47 -0.89 -10.87 16 29 C 0.02 0.37 9.81 113.37 1.11 1.48 16 30 H 0.11 1.40 6.06 -2.91 -0.02 1.38 16 31 H 0.12 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.11 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.08 1.05 6.20 -2.38 -0.01 1.04 16 35 H 0.08 1.14 6.70 -2.39 -0.02 1.12 16 36 H 0.10 2.70 8.05 -2.91 -0.02 2.67 16 37 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.12 2.30 5.79 -2.39 -0.01 2.28 16 39 H 0.41 12.49 8.14 -92.71 -0.75 11.73 16 40 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.37 15.47 5.66 -92.71 -0.52 14.95 16 43 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.11 4.41 7.26 -2.91 -0.02 4.39 16 45 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 46 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 47 H 0.15 2.99 6.30 -2.91 -0.02 2.97 16 48 H 0.06 1.06 7.67 -2.39 -0.02 1.04 16 49 H 0.07 1.06 7.66 -2.39 -0.02 1.05 16 50 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -72.32 412.98 4.02 -68.30 By element: Atomic # 1 Polarization: 49.05 SS G_CDS: -0.38 Total: 48.67 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 6.64 Total: -11.01 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -3.20 Total: -118.03 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.94 Total: -33.21 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.90 Total: 45.28 kcal Total: -72.32 4.02 -68.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198834127.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.732 kcal (2) G-P(sol) polarization free energy of solvation -72.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds