Wall clock time and date at job start Wed Apr 1 2020 04:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46879 * 2 1 4 4 C 1.52998 * 109.47038 * 120.00076 * 2 1 3 5 5 O 1.42902 * 109.46989 * 174.99999 * 4 2 1 6 6 C 1.42895 * 114.00308 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47609 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.46893 * 65.00035 * 7 6 5 9 9 C 1.46899 * 110.99959 * 180.02562 * 8 7 6 10 10 C 1.53070 * 109.44608 * 84.79445 * 9 8 7 11 11 C 1.53195 * 109.29524 * 181.23659 * 10 9 8 12 12 N 1.46919 * 108.89273 * 305.57804 * 11 10 9 13 13 C 1.34783 * 120.63144 * 233.55709 * 12 11 10 14 14 O 1.21274 * 119.99655 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99922 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.46922 * 180.02562 * 15 13 12 17 17 C 1.76204 * 99.99932 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00106 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99685 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00277 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46968 * 60.00376 * 21 19 17 23 23 H 1.48501 * 109.46947 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47386 * 300.00446 * 21 19 17 25 25 C 1.46928 * 118.73982 * 53.53793 * 12 11 10 26 26 C 1.53039 * 109.45920 * 205.00065 * 9 8 7 27 27 H 1.09003 * 109.47416 * 300.00019 * 1 2 3 28 28 H 1.09000 * 109.47855 * 59.99836 * 1 2 3 29 29 H 1.09002 * 109.47311 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46762 * 240.00269 * 2 1 3 31 31 H 1.09000 * 109.46828 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47126 * 299.99725 * 3 2 1 33 33 H 1.08991 * 109.47440 * 60.00360 * 3 2 1 34 34 H 1.08994 * 109.47351 * 54.99890 * 4 2 1 35 35 H 1.08992 * 109.47190 * 294.99832 * 4 2 1 36 36 H 1.09005 * 109.46996 * 60.00123 * 6 5 4 37 37 H 1.09000 * 109.47367 * 299.99982 * 6 5 4 38 38 H 1.09000 * 109.47160 * 305.00544 * 7 6 5 39 39 H 1.08994 * 109.47789 * 185.00146 * 7 6 5 40 40 H 1.00902 * 110.99856 * 303.95735 * 8 7 6 41 41 H 1.09007 * 109.45634 * 324.96604 * 9 8 7 42 42 H 1.08997 * 109.38860 * 61.35846 * 10 9 8 43 43 H 1.09003 * 109.62046 * 301.25189 * 10 9 8 44 44 H 1.09002 * 109.58720 * 185.71834 * 11 10 9 45 45 H 1.08996 * 109.58651 * 65.43731 * 11 10 9 46 46 H 1.09001 * 109.47385 * 300.00399 * 15 13 12 47 47 H 1.08997 * 109.47457 * 60.00250 * 15 13 12 48 48 H 0.96997 * 119.99912 * 179.97438 * 20 19 17 49 49 H 1.08998 * 109.58787 * 66.18123 * 25 12 11 50 50 H 1.09007 * 109.58600 * 186.46436 * 25 12 11 51 51 H 1.09002 * 109.49876 * 58.67240 * 26 9 8 52 52 H 1.09005 * 109.52615 * 298.59489 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 3.4641 -0.8238 1.1920 6 6 4.0451 -1.4846 2.3179 7 6 5.5649 -1.5373 2.1502 8 7 6.1082 -0.1727 2.1776 9 6 7.5685 -0.1842 2.0183 10 6 7.9183 -0.2285 0.5288 11 6 9.4411 -0.2715 0.3675 12 7 10.0287 0.8619 1.0946 13 6 10.8665 1.7159 0.4739 14 8 11.1414 1.5528 -0.6960 15 6 11.4606 2.8741 1.2332 16 16 12.5343 3.8296 0.1330 17 6 13.0781 5.0814 1.2476 18 1 12.7320 5.0810 2.2706 19 6 13.9513 6.0678 0.8107 20 7 14.3728 6.0686 -0.4364 21 14 14.5273 7.3953 1.9920 22 1 15.2386 6.7668 3.1342 23 1 15.4473 8.3220 1.2848 24 1 13.3537 8.1526 2.4961 25 6 9.6854 1.0469 2.5112 26 6 8.1600 1.0787 2.6487 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6054 -1.7198 1.2952 35 1 1.7516 -0.1584 2.1369 36 1 3.6521 -2.4990 2.3865 37 1 3.7984 -0.9372 3.2276 38 1 5.8092 -2.0065 1.1972 39 1 6.0003 -2.1181 2.9633 40 1 5.6724 0.4041 1.4737 41 1 7.9807 -1.0639 2.5125 42 1 7.5254 0.6620 0.0382 43 1 7.4792 -1.1176 0.0760 44 1 9.6988 -0.2009 -0.6893 45 1 9.8255 -1.2063 0.7756 46 1 10.6602 3.5138 1.6049 47 1 12.0439 2.4970 2.0732 48 1 14.9827 6.7582 -0.7417 49 1 10.0878 0.2196 3.0958 50 1 10.1064 1.9864 2.8695 51 1 7.8906 1.1190 3.7041 52 1 7.7670 1.9586 2.1392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199387655.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:41 Heat of formation + Delta-G solvation = -101.638401 kcal Electronic energy + Delta-G solvation = -27717.114671 eV Core-core repulsion = 23842.041860 eV Total energy + Delta-G solvation = -3875.072811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.99870 -38.87519 -37.77817 -35.88801 -34.85815 -32.40930 -31.99337 -31.39969 -29.19297 -28.11058 -27.51695 -26.14366 -25.47452 -24.09472 -23.22053 -22.20130 -20.99377 -20.60186 -19.06399 -17.69231 -17.16996 -16.78610 -16.62472 -15.88015 -15.58018 -15.31744 -15.26059 -14.91566 -14.78539 -14.46460 -14.30321 -14.05499 -13.87567 -13.57531 -13.16448 -13.01773 -12.98991 -12.72758 -12.62031 -12.54388 -12.32496 -12.26129 -11.95208 -11.79730 -11.55676 -11.36165 -11.33467 -11.25478 -11.03620 -11.02205 -10.99307 -10.91336 -10.74197 -10.66465 -9.97164 -9.79159 -9.32423 -9.04010 -8.67817 -8.46519 -8.20341 -6.47874 -6.19416 -3.90010 2.97078 3.08606 3.24979 3.25052 3.27621 3.30765 3.62785 3.82378 4.22356 4.42075 4.46308 4.52278 4.64641 4.70549 4.75478 4.88160 4.88807 4.98097 5.01885 5.03015 5.07033 5.08319 5.15496 5.18982 5.20242 5.28672 5.34877 5.38006 5.40827 5.48273 5.53036 5.54371 5.57756 5.62388 5.69191 5.75604 5.77939 5.87892 5.89458 5.94201 5.99759 6.00660 6.11544 6.14774 6.68278 6.74268 6.84143 7.14601 7.59687 7.61774 8.37025 8.59965 9.25618 10.87933 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.001813 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.604771 B =15438.610591 C =16115.159604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.069 3.931 5 O -0.387 6.387 6 C 0.063 3.937 7 C 0.062 3.938 8 N -0.683 5.683 9 C 0.089 3.911 10 C -0.162 4.162 11 C 0.118 3.882 12 N -0.620 5.620 13 C 0.535 3.465 14 O -0.519 6.519 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.108 3.892 26 C -0.121 4.121 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.350 0.650 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.062 0.938 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.269 0.731 49 H 0.066 0.934 50 H 0.092 0.908 51 H 0.081 0.919 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.908 -17.291 7.592 32.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.008 4.008 5 O -0.307 6.307 6 C -0.014 4.014 7 C -0.068 4.068 8 N -0.314 5.314 9 C -0.021 4.021 10 C -0.202 4.202 11 C -0.006 4.006 12 N -0.357 5.357 13 C 0.323 3.677 14 O -0.393 6.393 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.016 4.016 26 C -0.160 4.160 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.169 0.831 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.111 0.889 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.078 0.922 49 H 0.084 0.916 50 H 0.110 0.890 51 H 0.099 0.901 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.263 -17.342 6.251 31.274 hybrid contribution -0.121 0.635 1.467 1.603 sum -25.384 -16.707 7.718 31.354 Atomic orbital electron populations 1.21792 0.94385 1.01867 1.02344 1.21104 0.95408 0.97142 0.97785 1.21782 1.02072 0.94843 1.01491 1.22545 0.81106 0.98920 0.98180 1.87842 1.20072 1.79249 1.43501 1.22565 0.93350 0.96131 0.89372 1.21988 0.92568 0.91242 1.00990 1.60635 1.04211 1.10999 1.55510 1.21572 0.87634 0.98811 0.94093 1.22640 0.96937 1.02691 0.97896 1.21395 0.91678 0.88502 0.99031 1.48116 1.47557 1.28606 1.11372 1.20337 0.77704 0.82443 0.87202 1.90683 1.59274 1.73113 1.16241 1.23551 1.03823 0.98450 1.04253 1.85401 1.54439 1.29095 1.14564 1.22822 1.33187 1.13684 0.98660 0.90986 1.24988 0.95332 0.97541 0.95696 1.70010 1.31406 1.33814 1.15064 0.86231 0.78603 0.80464 0.80241 1.19940 1.20827 1.19936 1.21736 0.95117 1.02959 0.81748 1.21888 0.94324 0.97899 1.01898 0.92493 0.91937 0.92634 0.90478 0.91722 0.92775 0.92862 0.93675 0.93326 0.93159 0.92384 0.94327 0.89768 0.83064 0.90495 0.91139 0.91164 0.88943 0.92014 0.89244 0.89280 0.92151 0.91570 0.88991 0.90058 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.19 37.16 0.34 -0.38 16 2 C -0.10 -0.62 3.16 -90.62 -0.29 -0.91 16 3 C -0.14 -1.03 9.09 37.16 0.34 -0.69 16 4 C 0.07 0.46 5.32 37.16 0.20 0.66 16 5 O -0.39 -3.23 9.40 -35.23 -0.33 -3.56 16 6 C 0.06 0.43 6.28 37.16 0.23 0.66 16 7 C 0.06 0.44 5.90 -3.82 -0.02 0.42 16 8 N -0.68 -5.80 6.25 -106.67 -0.67 -6.47 16 9 C 0.09 0.79 2.42 -67.66 -0.16 0.62 16 10 C -0.16 -1.62 5.34 -26.59 -0.14 -1.77 16 11 C 0.12 1.46 6.43 -3.71 -0.02 1.43 16 12 N -0.62 -8.97 2.97 -172.77 -0.51 -9.48 16 13 C 0.54 10.42 7.72 -10.98 -0.08 10.34 16 14 O -0.52 -12.12 15.27 5.56 0.08 -12.04 16 15 C -0.15 -3.10 4.50 36.00 0.16 -2.94 16 16 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 17 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 21 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 25 C 0.11 1.20 6.34 -3.71 -0.02 1.18 16 26 C -0.12 -1.17 5.69 -26.61 -0.15 -1.32 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.54 7.82 -51.93 -0.41 0.14 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.04 0.29 7.41 -51.93 -0.38 -0.09 16 39 H 0.08 0.52 8.05 -51.93 -0.42 0.10 16 40 H 0.35 3.30 8.04 -39.29 -0.32 2.98 16 41 H 0.08 0.64 7.80 -51.93 -0.40 0.24 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.63 7.42 -51.93 -0.39 0.25 16 44 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 1.72 7.69 -51.91 -0.40 1.32 16 47 H 0.09 1.70 7.94 -51.92 -0.41 1.29 16 48 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.09 1.06 5.93 -51.92 -0.31 0.75 16 51 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 52 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 424.30 15.07 6.39 6.39 Total: -1.00 -33.80 424.30 -10.65 -44.45 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -9.68 Total: -0.53 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 0.57 Total: -5.74 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: -0.45 Total: -41.55 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.25 Total: -15.60 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -33.80 -10.65 -44.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199387655.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.193 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds