Wall clock time and date at job start Wed Apr 1 2020 04:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46971 * 2 1 4 4 C 1.52999 * 109.47330 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47369 * 179.97438 * 4 3 2 6 6 C 1.42902 * 114.00077 * 179.97438 * 5 4 3 7 7 C 1.52993 * 109.47303 * 179.97438 * 6 5 4 8 8 N 1.46907 * 109.47090 * 64.99887 * 7 6 5 9 9 C 1.46894 * 111.00057 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.50022 * 34.93267 * 9 8 7 11 11 C 1.53040 * 109.49833 * 155.00043 * 9 8 7 12 12 C 1.53044 * 109.53662 * 181.31456 * 11 9 8 13 13 C 1.53191 * 109.31440 * 298.63203 * 12 11 9 14 14 N 1.46926 * 108.89109 * 54.56430 * 13 12 11 15 15 C 1.34780 * 120.62730 * 126.46248 * 14 13 12 16 16 O 1.21280 * 119.99699 * 180.02562 * 15 14 13 17 17 C 1.50691 * 120.00213 * 359.97438 * 15 14 13 18 18 S 1.80996 * 109.47171 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00317 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99869 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00315 * 180.02562 * 19 18 17 22 22 N 1.31632 * 120.00035 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00129 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47027 * 60.00015 * 23 21 19 25 25 H 1.48501 * 109.47317 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47127 * 300.00208 * 23 21 19 27 27 C 1.46957 * 118.71783 * 306.64359 * 14 13 12 28 28 H 1.08999 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47192 * 299.99883 * 1 2 3 30 30 H 1.08998 * 109.47266 * 60.00130 * 1 2 3 31 31 H 1.08995 * 109.47424 * 239.99865 * 2 1 3 32 32 H 1.09007 * 109.47199 * 119.99572 * 2 1 3 33 33 H 1.08998 * 109.47658 * 59.99646 * 3 2 1 34 34 H 1.08998 * 109.47019 * 300.00021 * 3 2 1 35 35 H 1.08998 * 109.47068 * 59.99249 * 4 3 2 36 36 H 1.09007 * 109.46990 * 299.99664 * 4 3 2 37 37 H 1.09001 * 109.47278 * 59.99472 * 6 5 4 38 38 H 1.09005 * 109.46629 * 299.99886 * 6 5 4 39 39 H 1.09006 * 109.47101 * 305.00320 * 7 6 5 40 40 H 1.09001 * 109.47570 * 185.00003 * 7 6 5 41 41 H 1.00902 * 111.00006 * 56.04926 * 8 7 6 42 42 H 1.08994 * 109.45892 * 61.29595 * 11 9 8 43 43 H 1.09000 * 109.46209 * 301.33344 * 11 9 8 44 44 H 1.09003 * 109.49852 * 178.68467 * 12 11 9 45 45 H 1.09001 * 109.52587 * 58.60428 * 12 11 9 46 46 H 1.09002 * 109.58786 * 174.42474 * 13 12 11 47 47 H 1.08996 * 109.58870 * 294.70753 * 13 12 11 48 48 H 1.08998 * 109.47452 * 300.00605 * 17 15 14 49 49 H 1.09005 * 109.46717 * 60.00766 * 17 15 14 50 50 H 0.96991 * 120.00073 * 179.97438 * 22 21 19 51 51 H 1.09001 * 109.46843 * 293.57352 * 27 14 13 52 52 H 1.08998 * 109.59977 * 173.21569 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 8 4.0462 2.7899 -0.0012 6 6 5.4708 2.9028 -0.0013 7 6 5.8653 4.3810 -0.0026 8 7 5.4259 5.0062 1.2521 9 6 5.7880 6.4294 1.2861 10 1 5.7120 6.8482 0.2827 11 6 4.8374 7.1760 2.2247 12 6 5.1932 8.6645 2.2356 13 6 6.6232 8.8398 2.7562 14 7 7.5281 8.0090 1.9501 15 6 8.6133 8.5488 1.3606 16 8 9.3524 7.8525 0.6973 17 6 8.9078 10.0175 1.5245 18 16 10.4201 10.4341 0.6217 19 6 10.5233 12.1571 0.9759 20 1 9.7707 12.6279 1.5911 21 6 11.5710 12.9095 0.4635 22 7 12.4880 12.3359 -0.2866 23 14 11.6799 14.7362 0.8386 24 1 11.7799 14.9350 2.3068 25 1 12.8824 15.3061 0.1794 26 1 10.4644 15.4197 0.3282 27 6 7.2248 6.5794 1.7959 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9288 -0.8908 36 1 3.9337 0.9287 0.8892 37 1 5.8736 2.4188 -0.8910 38 1 5.8735 2.4196 0.8890 39 1 5.3894 4.8833 -0.8449 40 1 6.9481 4.4681 -0.0922 41 1 5.8025 4.5178 2.0507 42 1 4.9316 6.7728 3.2329 43 1 3.8117 7.0504 1.8780 44 1 4.5011 9.1993 2.8861 45 1 5.1230 9.0632 1.2235 46 1 6.9166 9.8863 2.6731 47 1 6.6731 8.5281 3.7994 48 1 8.0761 10.6011 1.1299 49 1 9.0421 10.2453 2.5820 50 1 13.2200 12.8617 -0.6450 51 1 7.3242 6.0809 2.7602 52 1 7.9151 6.1344 1.0793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207429749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:12 Heat of formation + Delta-G solvation = -124.706785 kcal Electronic energy + Delta-G solvation = -27362.151149 eV Core-core repulsion = 23486.078017 eV Total energy + Delta-G solvation = -3876.073131 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.27875 -39.38003 -38.69092 -36.62203 -35.63742 -34.59244 -33.52610 -32.12914 -30.86814 -29.73530 -27.94849 -27.64496 -26.13086 -24.19653 -23.80553 -22.93226 -21.97475 -21.78166 -20.41911 -19.49067 -18.23093 -17.77204 -17.32968 -17.11705 -16.88504 -16.76987 -16.22801 -16.16928 -15.84579 -15.48575 -15.30347 -15.14880 -14.77328 -14.53209 -14.45191 -14.33971 -14.10092 -13.94364 -13.70721 -13.49820 -13.31021 -13.17225 -13.06121 -12.86888 -12.63693 -12.43931 -12.31272 -12.17507 -11.93049 -11.89353 -11.84323 -11.75053 -11.72088 -11.51210 -11.46631 -11.13310 -10.94079 -10.48960 -10.28195 -9.94233 -9.27403 -8.68874 -8.35002 -6.14010 1.23848 1.43915 1.44790 1.52354 1.55035 2.05102 2.26929 2.72845 2.99203 3.08806 3.23845 3.61699 3.76461 3.94940 3.99209 4.00905 4.02342 4.05690 4.18892 4.22343 4.23693 4.24860 4.28048 4.41442 4.42543 4.49059 4.50425 4.54491 4.59031 4.68324 4.73010 4.77171 4.80706 4.88443 4.94426 4.95392 4.96962 5.06550 5.10805 5.26265 5.28757 5.36405 5.37145 5.40784 5.45680 5.47273 5.95546 6.18838 6.24468 6.32579 6.45505 7.05980 7.09406 8.74090 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027639 B = 0.001590 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.828818 B =17610.536768 C =18182.692648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.115 4.115 4 C 0.057 3.943 5 O -0.396 6.396 6 C 0.069 3.931 7 C 0.057 3.943 8 N -0.666 5.666 9 C 0.084 3.916 10 H 0.060 0.940 11 C -0.097 4.097 12 C -0.129 4.129 13 C 0.097 3.903 14 N -0.604 5.604 15 C 0.531 3.469 16 O -0.569 6.569 17 C -0.123 4.123 18 S -0.153 6.153 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.015 3.985 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.262 1.262 27 C 0.087 3.913 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.348 0.652 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.055 0.945 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.107 0.893 49 H 0.108 0.892 50 H 0.271 0.729 51 H 0.085 0.915 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.284 -20.722 6.985 32.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.153 4.153 4 C -0.020 4.020 5 O -0.315 6.315 6 C -0.008 4.008 7 C -0.072 4.072 8 N -0.297 5.297 9 C -0.027 4.027 10 H 0.079 0.921 11 C -0.135 4.135 12 C -0.168 4.168 13 C -0.024 4.024 14 N -0.338 5.338 15 C 0.319 3.681 16 O -0.448 6.448 17 C -0.274 4.274 18 S 0.074 5.926 19 C -0.695 4.695 20 H 0.102 0.898 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.038 4.038 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.167 0.833 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.124 0.876 45 H 0.074 0.926 46 H 0.107 0.893 47 H 0.111 0.889 48 H 0.125 0.875 49 H 0.127 0.873 50 H 0.080 0.920 51 H 0.103 0.897 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.829 -21.491 5.688 32.589 hybrid contribution 0.978 1.467 0.582 1.857 sum -22.851 -20.024 6.270 31.023 Atomic orbital electron populations 1.21764 0.95159 1.02166 1.01944 1.21428 0.96473 0.95124 1.02603 1.21512 0.93222 0.97908 1.02625 1.22626 0.95461 0.83401 1.00468 1.87962 1.21196 1.26917 1.95461 1.22507 0.81595 0.95658 1.01054 1.22025 0.97744 0.94117 0.93342 1.60638 1.63193 1.01393 1.04459 1.21861 0.91723 0.89507 0.99636 0.92147 1.21427 0.98955 0.93501 0.99628 1.21921 0.95372 0.97179 1.02283 1.22104 0.89393 0.95656 0.95289 1.48067 1.24746 1.09990 1.50982 1.20187 0.80568 0.89084 0.78255 1.90663 1.49387 1.63283 1.41465 1.23364 1.03079 0.95428 1.05513 1.85588 1.28779 1.10919 1.67300 1.23164 1.14587 0.93736 1.37964 0.89843 1.26127 0.93976 1.04919 0.93980 1.70179 1.13069 1.38705 1.32867 0.85006 0.78147 0.75842 0.79025 1.18555 1.20408 1.18605 1.22459 0.98017 0.81277 1.02017 0.91864 0.92686 0.92815 0.91488 0.91327 0.91792 0.92098 0.93092 0.92785 0.92021 0.92197 0.91356 0.93521 0.83306 0.90323 0.90686 0.87569 0.92615 0.89314 0.88898 0.87489 0.87340 0.91988 0.89697 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.60 16 2 C -0.12 -1.09 5.93 30.59 0.18 -0.91 16 3 C -0.12 -1.46 5.58 30.59 0.17 -1.29 16 4 C 0.06 0.78 5.94 71.98 0.43 1.21 16 5 O -0.40 -7.52 10.29 -148.98 -1.53 -9.05 16 6 C 0.07 1.07 6.22 71.98 0.45 1.52 16 7 C 0.06 1.05 5.87 86.30 0.51 1.56 16 8 N -0.67 -11.79 6.20 -491.17 -3.04 -14.83 16 9 C 0.08 1.66 2.62 45.00 0.12 1.77 16 10 H 0.06 1.48 7.80 -2.39 -0.02 1.46 16 11 C -0.10 -1.51 5.49 30.62 0.17 -1.34 16 12 C -0.13 -2.00 6.08 30.67 0.19 -1.81 16 13 C 0.10 1.86 6.34 86.36 0.55 2.41 16 14 N -0.60 -16.64 2.98 -818.83 -2.44 -19.08 16 15 C 0.53 20.62 7.72 87.65 0.68 21.30 16 16 O -0.57 -27.32 15.28 -3.03 -0.05 -27.37 16 17 C -0.12 -5.00 4.50 71.23 0.32 -4.68 16 18 S -0.15 -8.62 20.57 -56.49 -1.16 -9.79 16 19 C -0.55 -31.34 9.50 67.95 0.65 -30.69 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.84 5.49 84.86 0.47 1.31 16 22 N -0.91 -56.28 13.22 21.65 0.29 -56.00 16 23 Si 1.00 43.50 29.55 68.60 2.03 45.53 16 24 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 27 C 0.09 2.05 5.69 86.36 0.49 2.54 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.07 1.45 8.06 -2.38 -0.02 1.43 16 40 H 0.05 0.90 7.57 -2.39 -0.02 0.88 16 41 H 0.35 5.13 8.41 -89.69 -0.75 4.37 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.09 1.76 5.93 -2.39 -0.01 1.74 16 47 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.11 3.96 7.69 -2.40 -0.02 3.94 16 49 H 0.11 3.98 7.94 -2.39 -0.02 3.96 16 50 H 0.27 15.56 8.31 -92.72 -0.77 14.79 16 51 H 0.08 1.64 8.04 -2.39 -0.02 1.62 16 52 H 0.06 1.85 6.49 -2.39 -0.02 1.84 16 Total: -1.00 -76.79 426.63 0.27 -76.52 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.12 Total: 21.77 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 6.07 Total: -7.71 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -5.20 Total: -89.91 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -1.58 Total: -36.42 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.79 kcal Total: -76.79 0.27 -76.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207429749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.191 kcal (2) G-P(sol) polarization free energy of solvation -76.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds