Wall clock time and date at job start Wed Apr 1 2020 03:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99784 * 2 1 4 4 C 1.52998 * 109.47482 * 123.38312 * 3 2 1 5 5 H 1.08999 * 109.47021 * 305.48909 * 4 3 2 6 6 C 1.52997 * 109.47299 * 185.49019 * 4 3 2 7 7 C 1.50698 * 109.47076 * 64.99975 * 6 4 3 8 8 C 1.38237 * 119.99877 * 269.72162 * 7 6 4 9 9 C 1.38230 * 120.00016 * 179.76596 * 8 7 6 10 10 C 1.38244 * 119.99812 * 0.49188 * 9 8 7 11 11 C 1.38233 * 119.99794 * 359.78803 * 10 9 8 12 12 C 1.38231 * 119.99982 * 90.00249 * 7 6 4 13 13 C 1.50701 * 109.46931 * 65.48758 * 4 3 2 14 14 O 1.21277 * 120.00358 * 35.00705 * 13 4 3 15 15 N 1.34780 * 119.99967 * 215.00547 * 13 4 3 16 16 C 1.46495 * 120.00178 * 174.82535 * 15 13 4 17 17 H 1.08995 * 110.64170 * 36.68874 * 16 15 13 18 18 C 1.54323 * 110.72313 * 273.54800 * 16 15 13 19 19 N 1.47019 * 107.27287 * 263.65284 * 18 16 15 20 20 C 1.36934 * 125.65210 * 181.02205 * 19 18 16 21 21 H 1.08001 * 119.99906 * 9.17398 * 20 19 18 22 22 C 1.38811 * 120.00250 * 189.17466 * 20 19 18 23 23 N 1.31625 * 120.00155 * 205.37181 * 22 20 19 24 24 Si 1.86797 * 120.00082 * 25.36908 * 22 20 19 25 25 H 1.48501 * 109.47384 * 270.00290 * 24 22 20 26 26 H 1.48499 * 109.47121 * 30.00451 * 24 22 20 27 27 H 1.48495 * 109.47249 * 150.00137 * 24 22 20 28 28 C 1.47425 * 108.70249 * 1.28271 * 19 18 16 29 29 C 1.55132 * 104.72216 * 335.55777 * 28 19 18 30 30 H 1.09004 * 111.22141 * 279.17239 * 29 28 19 31 31 O 1.42898 * 110.90836 * 155.27379 * 29 28 19 32 32 H 1.08006 * 120.00344 * 0.02562 * 1 2 3 33 33 H 1.08004 * 120.00114 * 179.97438 * 1 2 3 34 34 H 1.07999 * 120.00002 * 179.97438 * 2 1 3 35 35 H 1.08996 * 109.47264 * 3.38087 * 3 2 1 36 36 H 1.09003 * 109.46759 * 243.38078 * 3 2 1 37 37 H 1.09004 * 109.47052 * 184.99993 * 6 4 3 38 38 H 1.09001 * 109.47143 * 304.99732 * 6 4 3 39 39 H 1.08004 * 119.99841 * 0.02562 * 8 7 6 40 40 H 1.07998 * 120.00267 * 180.25099 * 9 8 7 41 41 H 1.08002 * 119.99914 * 179.76276 * 10 9 8 42 42 H 1.07997 * 119.99594 * 179.97438 * 11 10 9 43 43 H 1.08006 * 120.00248 * 359.97438 * 12 7 6 44 44 H 0.97002 * 119.99801 * 354.82508 * 15 13 4 45 45 H 1.08994 * 109.88434 * 144.23153 * 18 16 15 46 46 H 1.09001 * 110.01044 * 23.14113 * 18 16 15 47 47 H 0.96996 * 119.99503 * 354.96277 * 23 22 20 48 48 H 1.09008 * 110.36697 * 94.48208 * 28 19 18 49 49 H 1.09001 * 110.37011 * 216.80850 * 28 19 18 50 50 H 0.96705 * 114.00312 * 67.97233 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0058 1.3501 1.2045 5 1 2.4381 1.1682 2.1170 6 6 3.6689 2.7267 1.2822 7 6 2.6209 3.7743 1.5567 8 6 1.9810 4.4039 0.5055 9 6 1.0163 5.3613 0.7572 10 6 0.6985 5.6964 2.0603 11 6 1.3425 5.0708 3.1114 12 6 2.3035 4.1096 2.8596 13 6 4.0659 0.2897 1.0527 14 8 4.4965 0.0158 -0.0475 15 7 4.5355 -0.3542 2.1396 16 6 5.4815 -1.4617 1.9831 17 1 6.1704 -1.2654 1.1616 18 6 4.7323 -2.7925 1.7611 19 7 4.6312 -3.4597 3.0672 20 6 4.0518 -4.6788 3.2980 21 1 3.7523 -5.3003 2.4671 22 6 3.8494 -5.1158 4.5999 23 7 3.7779 -6.4045 4.8580 24 14 3.6785 -3.8749 5.9857 25 1 5.0180 -3.5822 6.5561 26 1 3.0808 -2.6223 5.4576 27 1 2.8007 -4.4337 7.0451 28 6 5.2514 -2.5961 4.0885 29 6 6.2581 -1.7160 3.3020 30 1 7.1870 -2.2535 3.1111 31 8 6.5113 -0.4904 3.9917 32 1 -0.5401 0.9353 -0.0004 33 1 -0.5400 -0.9353 -0.0004 34 1 1.8500 -0.9353 0.0004 35 1 1.3567 2.1327 0.0606 36 1 2.6439 1.3895 -0.9188 37 1 4.4055 2.7304 2.0857 38 1 4.1627 2.9461 0.3356 39 1 2.2320 4.1448 -0.5126 40 1 0.5135 5.8503 -0.0640 41 1 -0.0525 6.4472 2.2570 42 1 1.0946 5.3329 4.1293 43 1 2.8063 3.6206 3.6809 44 1 4.2471 -0.0842 3.0255 45 1 5.2899 -3.4204 1.0662 46 1 3.7352 -2.5978 1.3661 47 1 3.7933 -7.0462 4.1308 48 1 4.4959 -1.9747 4.5695 49 1 5.7747 -3.2004 4.8294 50 1 6.9946 -0.5990 4.8223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221033364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:55 Heat of formation + Delta-G solvation = -19.570815 kcal Electronic energy + Delta-G solvation = -30752.287354 eV Core-core repulsion = 26745.329309 eV Total energy + Delta-G solvation = -4006.958045 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.34580 -39.40965 -38.25838 -35.80829 -35.37841 -33.92268 -33.45204 -31.96517 -31.12923 -30.36832 -28.71960 -27.78441 -26.55975 -24.39937 -23.44273 -22.75137 -21.45397 -21.02456 -20.33403 -19.78762 -19.52028 -17.63433 -17.44868 -17.12778 -16.85698 -15.98282 -15.65768 -15.38615 -15.26245 -14.95926 -14.81776 -14.20230 -13.97119 -13.83368 -13.64541 -13.35197 -13.24472 -13.11437 -12.96551 -12.88708 -12.78222 -12.45237 -12.35334 -11.87240 -11.48865 -11.44763 -11.39662 -11.31232 -11.26639 -11.10682 -10.84982 -10.79219 -10.34975 -9.96928 -9.64660 -9.48997 -9.30095 -9.29957 -9.12440 -8.90773 -8.76714 -8.56307 -7.17033 -6.39627 -3.25706 1.10930 1.17537 2.32201 2.80130 3.29190 3.31552 3.43738 3.58310 3.59173 4.16437 4.47816 4.51328 4.56308 4.72520 4.77392 4.87000 4.88302 4.91099 4.96396 5.05362 5.15796 5.23057 5.25888 5.27533 5.34248 5.36037 5.39275 5.48508 5.55038 5.60722 5.77120 5.83233 5.84079 5.84601 5.89238 6.01331 6.03073 6.22801 6.23939 6.29066 6.36489 6.41251 6.45320 6.49804 6.70359 6.77872 6.80495 6.85537 7.57471 7.71704 7.76183 8.27029 8.43198 8.96913 9.50564 10.15801 11.09586 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.003028 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.173182 B = 9244.101952 C = 9400.976610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C -0.080 4.080 4 C -0.094 4.094 5 H 0.091 0.909 6 C -0.070 4.070 7 C -0.076 4.076 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.126 4.126 11 C -0.118 4.118 12 C -0.115 4.115 13 C 0.522 3.478 14 O -0.545 6.545 15 N -0.701 5.701 16 C 0.144 3.856 17 H 0.097 0.903 18 C 0.127 3.873 19 N -0.603 5.603 20 C -0.328 4.328 21 H 0.078 0.922 22 C -0.022 4.022 23 N -0.919 5.919 24 Si 1.067 2.933 25 H -0.296 1.296 26 H -0.287 1.287 27 H -0.299 1.299 28 C 0.074 3.926 29 C 0.081 3.919 30 H 0.081 0.919 31 O -0.561 6.561 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.404 0.596 45 H 0.041 0.959 46 H 0.036 0.964 47 H 0.264 0.736 48 H 0.040 0.960 49 H 0.065 0.935 50 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.079 23.931 -5.056 24.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.167 4.167 3 C -0.117 4.117 4 C -0.116 4.116 5 H 0.109 0.891 6 C -0.108 4.108 7 C -0.076 4.076 8 C -0.133 4.133 9 C -0.138 4.138 10 C -0.144 4.144 11 C -0.136 4.136 12 C -0.133 4.133 13 C 0.308 3.692 14 O -0.422 6.422 15 N -0.352 5.352 16 C 0.038 3.962 17 H 0.115 0.885 18 C 0.000 4.000 19 N -0.332 5.332 20 C -0.455 4.455 21 H 0.096 0.904 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.899 3.101 25 H -0.224 1.224 26 H -0.214 1.214 27 H -0.226 1.226 28 C -0.051 4.051 29 C 0.021 3.979 30 H 0.099 0.901 31 O -0.366 6.366 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.239 0.761 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.058 0.942 49 H 0.082 0.918 50 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.311 23.995 -4.729 24.566 hybrid contribution 0.160 -0.459 -0.646 0.808 sum -2.151 23.536 -5.374 24.237 Atomic orbital electron populations 1.23804 0.95843 1.01605 1.02051 1.22996 0.96030 0.98679 0.98969 1.20758 0.97460 0.95856 0.97620 1.21251 0.95588 0.93430 1.01289 0.89085 1.20535 0.95897 0.90636 1.03725 1.19803 0.97494 0.96940 0.93355 1.21109 0.96696 0.96578 0.98894 1.21143 0.97941 0.97922 0.96831 1.21149 1.00103 1.00225 0.92922 1.21154 0.96607 0.96756 0.99129 1.21115 0.98062 0.97804 0.96299 1.20431 0.82401 0.82032 0.84381 1.90667 1.59442 1.66414 1.25698 1.45753 1.45929 1.34095 1.09406 1.21985 0.90508 0.86857 0.96818 0.88497 1.21776 0.97997 0.90355 0.89854 1.44657 1.67596 1.19337 1.01571 1.20053 1.39546 0.91127 0.94795 0.90379 1.25835 0.99032 0.99546 0.97814 1.70899 1.50928 1.00144 1.34048 0.83842 0.76066 0.74536 0.75625 1.22415 1.21416 1.22637 1.22747 0.94871 0.93626 0.93904 1.23387 0.97438 0.84941 0.92153 0.90114 1.86389 1.79747 1.30710 1.39743 0.88835 0.88536 0.87334 0.90366 0.89705 0.90130 0.89956 0.85915 0.86181 0.86308 0.86111 0.85877 0.76120 0.94080 0.94607 0.92607 0.94231 0.91752 0.77296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.34 14.32 29.02 0.42 -1.92 16 2 C -0.15 -1.97 9.08 -36.02 -0.33 -2.30 16 3 C -0.08 -0.93 4.64 -27.88 -0.13 -1.06 16 4 C -0.09 -1.11 2.16 -91.77 -0.20 -1.30 16 5 H 0.09 1.05 8.13 -51.93 -0.42 0.63 16 6 C -0.07 -0.70 4.82 -27.89 -0.13 -0.83 16 7 C -0.08 -0.72 4.71 -104.63 -0.49 -1.21 16 8 C -0.11 -1.01 7.88 -39.58 -0.31 -1.33 16 9 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 10 C -0.13 -1.01 10.05 -39.58 -0.40 -1.41 16 11 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 12 C -0.11 -1.05 9.70 -39.59 -0.38 -1.43 16 13 C 0.52 7.83 6.11 -10.98 -0.07 7.77 16 14 O -0.54 -9.79 15.85 5.56 0.09 -9.71 16 15 N -0.70 -10.78 4.79 -52.04 -0.25 -11.03 16 16 C 0.14 2.45 3.17 -66.10 -0.21 2.24 16 17 H 0.10 1.63 7.63 -51.93 -0.40 1.24 16 18 C 0.13 2.61 6.98 -3.07 -0.02 2.59 16 19 N -0.60 -14.35 3.30 -169.93 -0.56 -14.92 16 20 C -0.33 -9.25 10.45 -15.06 -0.16 -9.41 16 21 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 22 C -0.02 -0.63 5.43 -17.43 -0.09 -0.72 16 23 N -0.92 -28.39 13.70 55.49 0.76 -27.63 16 24 Si 1.07 25.85 24.69 -169.99 -4.20 21.65 16 25 H -0.30 -6.64 6.52 56.52 0.37 -6.27 16 26 H -0.29 -6.57 6.10 56.52 0.34 -6.23 16 27 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 28 C 0.07 1.51 4.40 -2.41 -0.01 1.50 16 29 C 0.08 1.30 4.23 -24.46 -0.10 1.20 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 O -0.56 -7.44 12.64 -35.23 -0.45 -7.89 16 32 H 0.09 0.97 7.84 -52.48 -0.41 0.56 16 33 H 0.10 1.12 8.06 -52.48 -0.42 0.70 16 34 H 0.11 1.69 7.81 -52.49 -0.41 1.28 16 35 H 0.08 0.80 5.55 -51.93 -0.29 0.51 16 36 H 0.08 1.05 7.66 -51.93 -0.40 0.65 16 37 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 39 H 0.12 0.96 8.00 -52.48 -0.42 0.54 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 44 H 0.40 5.83 8.21 -40.82 -0.34 5.49 16 45 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 47 H 0.26 8.08 8.73 -40.82 -0.36 7.72 16 48 H 0.04 0.82 5.72 -51.92 -0.30 0.52 16 49 H 0.06 1.38 5.81 -51.93 -0.30 1.08 16 50 H 0.38 3.51 9.12 45.56 0.42 3.93 16 LS Contribution 401.98 15.07 6.06 6.06 Total: -1.00 -33.57 401.98 -9.11 -42.68 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -7.15 Total: 11.19 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -3.42 Total: -10.42 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.05 Total: -53.57 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.36 Total: -17.59 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -4.20 Total: 21.65 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.57 -9.11 -42.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221033364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.113 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds