Wall clock time and date at job start Wed Apr 1 2020 04:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47257 * 2 1 4 4 C 1.52999 * 109.47348 * 119.99932 * 2 1 3 5 5 O 1.42897 * 109.47535 * 175.00126 * 4 2 1 6 6 C 1.42896 * 114.00154 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47364 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.46688 * 65.00061 * 7 6 5 9 9 C 1.47957 * 111.00289 * 269.35860 * 8 7 6 10 10 C 1.53928 * 86.18299 * 222.42019 * 9 8 7 11 11 C 1.47965 * 110.99825 * 170.00003 * 8 7 6 12 12 H 1.08999 * 113.86018 * 23.25072 * 11 8 7 13 13 C 1.52998 * 113.75993 * 251.90261 * 11 8 7 14 14 N 1.46500 * 109.47232 * 58.93491 * 13 11 8 15 15 C 1.46506 * 119.99822 * 269.99994 * 14 13 11 16 16 C 1.34769 * 120.00241 * 90.00321 * 14 13 11 17 17 O 1.21282 * 119.99850 * 359.97438 * 16 14 13 18 18 C 1.50702 * 120.00466 * 179.97438 * 16 14 13 19 19 S 1.81000 * 109.47238 * 179.97438 * 18 16 14 20 20 C 1.76205 * 99.99610 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00040 * 0.02562 * 20 19 18 22 22 C 1.38796 * 119.99527 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00398 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99780 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47210 * 59.99938 * 24 22 20 26 26 H 1.48498 * 109.47318 * 180.02562 * 24 22 20 27 27 H 1.48510 * 109.46991 * 299.99949 * 24 22 20 28 28 H 1.08997 * 109.47044 * 300.00112 * 1 2 3 29 29 H 1.09002 * 109.46879 * 60.00017 * 1 2 3 30 30 H 1.08997 * 109.47420 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47273 * 240.00260 * 2 1 3 32 32 H 1.08998 * 109.47528 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47162 * 299.99809 * 3 2 1 34 34 H 1.09001 * 109.47393 * 59.99532 * 3 2 1 35 35 H 1.09004 * 109.47057 * 54.99778 * 4 2 1 36 36 H 1.09003 * 109.47150 * 295.00188 * 4 2 1 37 37 H 1.09002 * 109.47297 * 60.00245 * 6 5 4 38 38 H 1.08996 * 109.47565 * 300.00429 * 6 5 4 39 39 H 1.09002 * 109.47183 * 305.00661 * 7 6 5 40 40 H 1.09001 * 109.47414 * 185.00141 * 7 6 5 41 41 H 1.08997 * 113.76175 * 108.09753 * 9 8 7 42 42 H 1.09004 * 113.75639 * 336.74106 * 9 8 7 43 43 H 1.09001 * 113.73534 * 269.36008 * 10 9 8 44 44 H 1.09004 * 113.82958 * 138.09519 * 10 9 8 45 45 H 1.09007 * 109.47087 * 298.93243 * 13 11 8 46 46 H 1.08999 * 109.47095 * 178.93825 * 13 11 8 47 47 H 1.08998 * 109.47145 * 270.00037 * 15 14 13 48 48 H 1.08996 * 109.46927 * 29.99844 * 15 14 13 49 49 H 1.08998 * 109.46879 * 150.00184 * 15 14 13 50 50 H 1.09004 * 109.46923 * 59.99646 * 18 16 14 51 51 H 1.09004 * 109.46818 * 300.00196 * 18 16 14 52 52 H 0.97006 * 120.00587 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 3.4641 -0.8238 1.1921 6 6 4.0450 -1.4845 2.3181 7 6 5.5648 -1.5373 2.1504 8 7 6.1080 -0.1726 2.1778 9 6 6.1702 0.4009 0.8153 10 6 7.5540 0.9419 1.2174 11 6 7.5854 -0.1915 2.2586 12 1 8.0353 -1.1136 1.8907 13 6 8.1337 0.2378 3.6209 14 7 7.6092 -0.6510 4.6606 15 6 6.3519 -0.3241 5.3379 16 6 8.2832 -1.7694 4.9941 17 8 9.3239 -2.0402 4.4331 18 6 7.7440 -2.6835 6.0641 19 16 8.8659 -4.0874 6.2799 20 6 8.0170 -4.9647 7.5506 21 1 7.0886 -4.5792 7.9453 22 6 8.5411 -6.1517 8.0433 23 7 9.6723 -6.6217 7.5619 24 14 7.6408 -7.0822 9.3899 25 1 6.2868 -7.4594 8.9107 26 1 8.4024 -8.3084 9.7385 27 1 7.5178 -6.2181 10.5915 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6053 -1.7198 1.2952 36 1 1.7516 -0.1583 2.1370 37 1 3.6520 -2.4989 2.3866 38 1 3.7982 -0.9372 3.2277 39 1 5.8092 -2.0065 1.1974 40 1 6.0002 -2.1180 2.9636 41 1 5.4302 1.1800 0.6325 42 1 6.2044 -0.3486 0.0246 43 1 7.5247 1.9395 1.6556 44 1 8.3093 0.8424 0.4378 45 1 7.8263 1.2626 3.8298 46 1 9.2221 0.1804 3.6089 47 1 6.5609 0.2833 6.2186 48 1 5.7068 0.2320 4.6578 49 1 5.8528 -1.2443 5.6414 50 1 6.7598 -3.0473 5.7690 51 1 7.6623 -2.1354 7.0028 52 1 10.0388 -7.4511 7.9065 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230815693.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:28 Heat of formation + Delta-G solvation = -57.316500 kcal Electronic energy + Delta-G solvation = -28774.021390 eV Core-core repulsion = 24900.870521 eV Total energy + Delta-G solvation = -3873.150869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.42673 -38.96694 -38.30559 -35.42757 -35.04634 -32.42535 -31.97361 -30.25981 -28.00514 -27.48489 -27.14422 -26.18025 -25.69005 -25.46057 -23.28301 -21.99532 -20.50401 -19.84720 -19.02050 -17.62462 -17.07778 -16.61384 -16.46781 -16.20776 -15.80181 -15.59907 -15.01898 -14.80264 -14.68806 -14.47933 -14.21888 -13.81180 -13.61580 -13.25857 -13.06115 -13.01004 -12.75914 -12.60528 -12.55660 -12.39472 -12.22975 -12.06742 -11.90854 -11.65766 -11.56847 -11.47796 -11.26350 -11.10622 -11.04131 -11.03856 -10.90311 -10.82366 -10.73425 -10.60113 -9.80496 -9.72545 -9.31220 -9.05650 -8.98691 -8.31325 -8.21679 -6.49342 -6.21056 -3.91550 2.99160 3.10463 3.23158 3.26328 3.29241 3.46576 3.60845 3.85408 4.21020 4.42899 4.51997 4.57217 4.68299 4.78590 4.90896 4.95313 5.02488 5.13233 5.13779 5.16895 5.17734 5.19742 5.26298 5.28510 5.32953 5.37934 5.45231 5.48976 5.53332 5.54583 5.60057 5.61282 5.65690 5.66603 5.73209 5.73858 5.79784 5.83828 5.92052 5.95113 5.97039 6.03778 6.10431 6.15866 6.31032 6.74203 6.96850 7.05963 7.59305 7.64853 8.35354 8.62435 9.24015 10.86248 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.002467 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.516564 B =11348.259607 C =13025.638701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.142 4.142 4 C 0.067 3.933 5 O -0.381 6.381 6 C 0.073 3.927 7 C 0.024 3.976 8 N -0.465 5.465 9 C 0.019 3.981 10 C -0.143 4.143 11 C 0.015 3.985 12 H 0.083 0.917 13 C 0.140 3.860 14 N -0.616 5.616 15 C 0.082 3.918 16 C 0.529 3.471 17 O -0.520 6.520 18 C -0.149 4.149 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.071 0.929 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.048 0.952 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.086 0.914 51 H 0.088 0.912 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.737 17.849 -14.515 27.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.199 4.199 4 C -0.010 4.010 5 O -0.301 6.301 6 C -0.004 4.004 7 C -0.104 4.104 8 N -0.188 5.188 9 C -0.110 4.110 10 C -0.181 4.181 11 C -0.096 4.096 12 H 0.100 0.900 13 C 0.016 3.984 14 N -0.351 5.351 15 C -0.061 4.061 16 C 0.317 3.683 17 O -0.394 6.394 18 C -0.299 4.299 19 S 0.164 5.836 20 C -0.683 4.683 21 H 0.089 0.911 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.067 0.933 48 H 0.100 0.900 49 H 0.086 0.914 50 H 0.104 0.896 51 H 0.106 0.894 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.348 17.674 -14.958 27.239 hybrid contribution -1.713 -1.068 1.234 2.366 sum -16.061 16.606 -13.725 26.872 Atomic orbital electron populations 1.21789 0.94520 1.01930 1.02157 1.21076 0.95291 0.96987 0.97917 1.21769 1.02000 0.94984 1.01185 1.22517 0.81742 0.98848 0.97850 1.87864 1.19397 1.79275 1.43515 1.22456 0.92994 0.95820 0.89112 1.22666 0.93723 0.92046 1.01996 1.68390 1.09880 1.17348 1.23188 1.23758 0.96672 0.99446 0.91138 1.23414 0.97523 0.98916 0.98254 1.23919 0.90106 0.99029 0.96528 0.89951 1.21280 0.99309 0.92954 0.84824 1.47738 1.24372 1.23966 1.38995 1.21795 0.85702 1.01517 0.97113 1.20356 0.83982 0.80725 0.83215 1.90687 1.22908 1.72281 1.53559 1.23542 1.05148 1.01948 0.99274 1.85382 1.29865 1.18172 1.50150 1.22814 1.11168 1.10505 1.23813 0.91059 1.24985 0.95091 0.96423 0.97066 1.70006 1.18208 1.20879 1.41194 0.86240 0.79407 0.78832 0.81114 1.19970 1.20813 1.19934 0.92527 0.92110 0.92584 0.90603 0.91740 0.93063 0.92980 0.93791 0.93529 0.93356 0.92647 0.93237 0.89373 0.89544 0.91561 0.89219 0.91082 0.90401 0.89594 0.93319 0.90047 0.91429 0.89557 0.89394 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.19 37.15 0.34 -0.51 16 2 C -0.09 -0.68 3.16 -90.62 -0.29 -0.97 16 3 C -0.14 -1.01 9.09 37.16 0.34 -0.67 16 4 C 0.07 0.56 5.32 37.16 0.20 0.76 16 5 O -0.38 -3.91 9.02 -35.23 -0.32 -4.23 16 6 C 0.07 0.75 6.28 37.16 0.23 0.98 16 7 C 0.02 0.28 5.29 -3.82 -0.02 0.26 16 8 N -0.46 -4.94 4.87 -230.71 -1.12 -6.06 16 9 C 0.02 0.17 7.13 -2.77 -0.02 0.16 16 10 C -0.14 -1.25 7.84 -25.80 -0.20 -1.46 16 11 C 0.01 0.17 3.55 -66.65 -0.24 -0.07 16 12 H 0.08 1.12 7.93 -51.93 -0.41 0.71 16 13 C 0.14 1.71 5.54 -4.04 -0.02 1.69 16 14 N -0.62 -8.73 2.82 -181.57 -0.51 -9.24 16 15 C 0.08 0.93 10.04 59.85 0.60 1.53 16 16 C 0.53 10.04 7.69 -10.99 -0.08 9.96 16 17 O -0.52 -11.79 15.44 5.56 0.09 -11.70 16 18 C -0.15 -3.04 4.71 36.01 0.17 -2.87 16 19 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 20 C -0.53 -15.25 9.50 30.94 0.29 -14.96 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 24 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.59 7.38 -51.93 -0.38 0.21 16 40 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 43 H 0.09 0.71 7.94 -51.93 -0.41 0.30 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.79 7.84 -51.93 -0.41 0.38 16 46 H 0.09 1.17 7.42 -51.93 -0.39 0.79 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.83 7.25 -51.93 -0.38 0.45 16 49 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 50 H 0.09 1.64 7.40 -51.91 -0.38 1.25 16 51 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 52 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 429.69 15.07 6.48 6.48 Total: -1.00 -33.18 429.69 -10.46 -43.64 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -9.77 Total: -1.73 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 1.21 Total: -4.16 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: -0.90 Total: -40.79 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.23 Total: -15.93 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.48 Total: 6.48 kcal Total: -33.18 -10.46 -43.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815693.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.675 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds