Wall clock time and date at job start Wed Apr 1 2020 04:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47208 * 2 1 4 4 C 1.53002 * 109.46959 * 120.00189 * 2 1 3 5 5 O 1.42901 * 109.47507 * 65.49920 * 4 2 1 6 6 C 1.42902 * 114.00154 * 175.04635 * 5 4 2 7 7 C 1.52998 * 109.46832 * 184.46741 * 6 5 4 8 8 N 1.46897 * 109.47343 * 79.61326 * 7 6 5 9 9 C 1.47473 * 111.00204 * 329.67563 * 8 7 6 10 10 C 1.53514 * 87.93749 * 138.70263 * 9 8 7 11 11 C 1.47481 * 110.99803 * 65.64742 * 8 7 6 12 12 H 1.08998 * 113.47931 * 336.12256 * 11 8 7 13 13 C 1.52998 * 113.47902 * 106.53242 * 11 8 7 14 14 N 1.46505 * 109.46883 * 305.06593 * 13 11 8 15 15 C 1.46499 * 119.99951 * 275.21357 * 14 13 11 16 16 C 1.34779 * 119.99588 * 95.21328 * 14 13 11 17 17 O 1.21276 * 120.00424 * 5.00922 * 16 14 13 18 18 C 1.50702 * 119.99638 * 185.00015 * 16 14 13 19 19 S 1.80992 * 109.47192 * 185.07668 * 18 16 14 20 20 C 1.76199 * 100.00322 * 175.02057 * 19 18 16 21 21 H 1.08000 * 119.99527 * 5.00399 * 20 19 18 22 22 C 1.38799 * 120.00444 * 185.01449 * 20 19 18 23 23 N 1.31625 * 119.99983 * 175.04605 * 22 20 19 24 24 Si 1.86802 * 119.99725 * 355.31397 * 22 20 19 25 25 H 1.48506 * 109.47203 * 274.86834 * 24 22 20 26 26 H 1.48503 * 109.47038 * 34.86722 * 24 22 20 27 27 H 1.48500 * 109.46788 * 154.86694 * 24 22 20 28 28 H 1.09006 * 109.46878 * 55.01169 * 1 2 3 29 29 H 1.08996 * 109.47771 * 175.01011 * 1 2 3 30 30 H 1.09000 * 109.47177 * 295.01376 * 1 2 3 31 31 H 1.09003 * 109.46734 * 239.99467 * 2 1 3 32 32 H 1.09006 * 109.46815 * 175.05671 * 3 2 1 33 33 H 1.08997 * 109.47374 * 295.05037 * 3 2 1 34 34 H 1.08993 * 109.47778 * 55.05914 * 3 2 1 35 35 H 1.09002 * 109.46667 * 305.50446 * 4 2 1 36 36 H 1.08994 * 109.47249 * 185.50375 * 4 2 1 37 37 H 1.08999 * 109.47138 * 64.46560 * 6 5 4 38 38 H 1.08998 * 109.47131 * 304.46212 * 6 5 4 39 39 H 1.09001 * 109.47524 * 319.61177 * 7 6 5 40 40 H 1.09001 * 109.46714 * 199.61558 * 7 6 5 41 41 H 1.09001 * 113.48154 * 253.46919 * 9 8 7 42 42 H 1.09009 * 113.47794 * 23.93592 * 9 8 7 43 43 H 1.08994 * 114.17156 * 220.33378 * 10 9 8 44 44 H 1.08991 * 114.16987 * 87.61881 * 10 9 8 45 45 H 1.09003 * 109.47276 * 185.06758 * 13 11 8 46 46 H 1.09000 * 109.47549 * 65.06516 * 13 11 8 47 47 H 1.08998 * 109.46943 * 270.00221 * 15 14 13 48 48 H 1.08998 * 109.47125 * 30.00233 * 15 14 13 49 49 H 1.09001 * 109.46778 * 150.00240 * 15 14 13 50 50 H 1.09011 * 109.46818 * 65.07901 * 18 16 14 51 51 H 1.08995 * 109.47364 * 305.08601 * 18 16 14 52 52 H 0.97004 * 119.99744 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6720 -2.1007 1.1865 6 6 2.1972 -2.8916 2.2545 7 6 1.8357 -4.3607 2.0268 8 7 2.7577 -4.9452 1.0439 9 6 3.2210 -3.9270 0.0830 10 6 4.6218 -4.5464 0.1869 11 6 4.1337 -4.9919 1.5726 12 1 4.3226 -4.2589 2.3569 13 6 4.5918 -6.4003 1.9563 14 7 3.6370 -6.9836 2.9021 15 6 3.7591 -6.7008 4.3344 16 6 2.6464 -7.7804 2.4545 17 8 2.5985 -8.0881 1.2824 18 6 1.5984 -8.2890 3.4105 19 16 0.5037 -9.4433 2.5474 20 6 -0.4965 -9.9819 3.8943 21 1 -0.3764 -9.5330 4.8693 22 6 -1.4384 -10.9831 3.7025 23 7 -2.1169 -11.4535 4.7277 24 14 -1.7379 -11.6682 1.9907 25 1 -2.7183 -10.8097 1.2784 26 1 -0.4592 -11.6904 1.2358 27 1 -2.2741 -13.0489 2.0969 28 1 -0.3633 0.5893 -0.8420 29 1 -0.3634 -1.0237 -0.0894 30 1 -0.3633 0.4345 0.9313 31 1 1.8933 -0.5139 -0.8900 32 1 3.1264 1.4436 0.0886 33 1 1.7509 1.9300 -0.9310 34 1 1.6063 1.9812 0.8423 35 1 1.5983 -0.2675 2.1365 36 1 3.1254 -0.6368 1.2999 37 1 1.7712 -2.5548 3.1996 38 1 3.2815 -2.7850 2.2863 39 1 0.8142 -4.4297 1.6527 40 1 1.9153 -4.9045 2.9681 41 1 2.7739 -4.0277 -0.9060 42 1 3.1667 -2.9090 0.4691 43 1 5.4315 -3.8172 0.2121 44 1 4.7997 -5.3666 -0.5085 45 1 5.5769 -6.3482 2.4201 46 1 4.6435 -7.0218 1.0624 47 1 4.3991 -7.4505 4.7995 48 1 4.1969 -5.7123 4.4735 49 1 2.7719 -6.7291 4.7957 50 1 1.0152 -7.4500 3.7902 51 1 2.0829 -8.8006 4.2422 52 1 -2.7755 -12.1530 4.5935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230815707.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:35 Heat of formation + Delta-G solvation = -60.649904 kcal Electronic energy + Delta-G solvation = -29163.350386 eV Core-core repulsion = 25290.054969 eV Total energy + Delta-G solvation = -3873.295416 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.95401 -40.39363 -38.97706 -36.43643 -35.96304 -34.67820 -32.83257 -31.54622 -29.18088 -28.09376 -27.98515 -27.85354 -27.24535 -26.41163 -24.19660 -23.33789 -21.22226 -20.71254 -20.19000 -19.51920 -18.17623 -17.89482 -17.81932 -17.20101 -17.07403 -16.89389 -16.33134 -16.03900 -15.72557 -15.64096 -15.26378 -14.95424 -14.80187 -14.41095 -14.16575 -14.13646 -14.07834 -13.58443 -13.44589 -13.35475 -13.28082 -13.13911 -13.01448 -12.99437 -12.77325 -12.66323 -12.44315 -12.40353 -12.13096 -11.97616 -11.89154 -11.86403 -11.71493 -11.54877 -11.50048 -11.19856 -10.74754 -10.55022 -10.48614 -9.72543 -9.34391 -8.98658 -8.52125 -6.22035 0.99836 1.30530 1.44373 1.56299 1.73014 2.18331 2.24984 2.60418 2.71198 2.86414 3.15652 3.59045 3.71111 3.79997 3.89570 3.92438 3.99160 4.04641 4.14934 4.19055 4.25567 4.29674 4.34374 4.38673 4.42985 4.47662 4.52276 4.54562 4.60391 4.65377 4.73616 4.74884 4.78184 4.90188 4.93672 4.97469 4.98966 5.01410 5.02840 5.03723 5.22454 5.29287 5.38087 5.39667 5.47926 5.70139 5.72518 6.10061 6.20855 6.23686 6.40895 6.93342 7.30194 8.59779 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.002636 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.041732 B =10617.668800 C =11751.975214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.141 4.141 4 C 0.060 3.940 5 O -0.396 6.396 6 C 0.039 3.961 7 C 0.024 3.976 8 N -0.482 5.482 9 C -0.014 4.014 10 C -0.128 4.128 11 C 0.011 3.989 12 H 0.102 0.898 13 C 0.132 3.868 14 N -0.608 5.608 15 C 0.071 3.929 16 C 0.538 3.462 17 O -0.548 6.548 18 C -0.102 4.102 19 S -0.180 6.180 20 C -0.527 4.527 21 H 0.061 0.939 22 C 0.047 3.953 23 N -0.915 5.915 24 Si 0.912 3.088 25 H -0.264 1.264 26 H -0.240 1.240 27 H -0.257 1.257 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.112 0.888 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.101 0.899 49 H 0.067 0.933 50 H 0.103 0.897 51 H 0.104 0.896 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.853 27.289 -4.114 32.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.199 4.199 4 C -0.016 4.016 5 O -0.316 6.316 6 C -0.038 4.038 7 C -0.105 4.105 8 N -0.204 5.204 9 C -0.142 4.142 10 C -0.166 4.166 11 C -0.099 4.099 12 H 0.119 0.881 13 C 0.009 3.991 14 N -0.341 5.341 15 C -0.072 4.072 16 C 0.324 3.676 17 O -0.425 6.425 18 C -0.253 4.253 19 S 0.047 5.953 20 C -0.674 4.674 21 H 0.080 0.920 22 C -0.158 4.158 23 N -0.553 5.553 24 Si 0.735 3.265 25 H -0.188 1.188 26 H -0.164 1.164 27 H -0.181 1.181 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.128 0.872 43 H 0.121 0.879 44 H 0.097 0.903 45 H 0.130 0.870 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.119 0.881 49 H 0.086 0.914 50 H 0.121 0.879 51 H 0.123 0.877 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.177 26.013 -6.088 31.762 hybrid contribution -0.641 0.391 1.661 1.823 sum 16.537 26.404 -4.427 31.468 Atomic orbital electron populations 1.21767 0.95260 1.01185 1.01859 1.21113 0.96229 0.96653 0.97360 1.21754 1.01524 0.93878 1.02704 1.22737 0.99330 0.81066 0.98492 1.88035 1.75323 1.20253 1.48012 1.23025 0.98930 0.91387 0.90505 1.22589 0.98540 0.92040 0.97303 1.69162 1.05704 1.34977 1.10578 1.24256 0.94911 0.97238 0.97765 1.23136 0.97020 1.00990 0.95491 1.23941 0.90594 0.97549 0.97862 0.88069 1.21585 0.91880 0.92374 0.93287 1.47634 1.29144 1.48354 1.09017 1.22058 1.03187 1.03294 0.78622 1.19771 0.81915 0.78187 0.87716 1.90669 1.74919 1.57853 1.19085 1.23258 0.98556 1.01960 1.01547 1.84741 1.39554 1.54329 1.16672 1.22441 1.23632 1.24823 0.96536 0.92034 1.25532 0.94389 0.95113 1.00806 1.70016 1.25142 1.28234 1.31909 0.85922 0.81106 0.79155 0.80364 1.18846 1.16379 1.18140 0.92099 0.94106 0.92650 0.91206 0.91612 0.91625 0.92092 0.92936 0.91899 0.91966 0.90989 0.92590 0.89796 0.92592 0.87162 0.87916 0.90304 0.86998 0.91867 0.91312 0.88051 0.91425 0.87910 0.87747 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.04 71.98 0.65 -1.55 16 2 C -0.10 -1.24 3.15 -10.80 -0.03 -1.28 16 3 C -0.14 -1.23 9.19 71.98 0.66 -0.57 16 4 C 0.06 0.80 5.09 71.98 0.37 1.16 16 5 O -0.40 -7.63 7.69 -148.98 -1.15 -8.78 16 6 C 0.04 0.65 5.11 71.98 0.37 1.02 16 7 C 0.02 0.58 6.22 86.30 0.54 1.12 16 8 N -0.48 -12.38 6.08 -902.17 -5.48 -17.86 16 9 C -0.01 -0.29 6.92 83.57 0.58 0.29 16 10 C -0.13 -2.10 8.00 30.94 0.25 -1.85 16 11 C 0.01 0.19 3.15 42.19 0.13 0.32 16 12 H 0.10 1.25 6.28 -2.39 -0.01 1.24 16 13 C 0.13 2.70 5.65 86.38 0.49 3.19 16 14 N -0.61 -15.12 2.56 -846.75 -2.17 -17.28 16 15 C 0.07 1.15 10.19 127.77 1.30 2.46 16 16 C 0.54 19.71 7.36 87.66 0.64 20.35 16 17 O -0.55 -24.94 15.36 -3.02 -0.05 -24.98 16 18 C -0.10 -4.10 4.59 71.24 0.33 -3.78 16 19 S -0.18 -9.52 18.62 -56.49 -1.05 -10.57 16 20 C -0.53 -31.52 10.03 67.95 0.68 -30.84 16 21 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 22 C 0.05 2.84 5.50 84.86 0.47 3.30 16 23 N -0.92 -56.61 13.97 21.65 0.30 -56.30 16 24 Si 0.91 46.53 27.70 68.60 1.90 48.43 16 25 H -0.26 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.24 -12.31 6.82 99.48 0.68 -11.63 16 27 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 29 H 0.04 0.81 7.97 -2.39 -0.02 0.79 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.62 8.12 -2.39 -0.02 0.60 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.90 5.39 -2.39 -0.01 0.89 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 1.98 7.91 -2.39 -0.02 1.96 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.11 1.98 3.72 -2.38 -0.01 1.97 16 43 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 1.55 7.93 -2.39 -0.02 1.53 16 45 H 0.11 1.44 8.11 -2.39 -0.02 1.42 16 46 H 0.06 1.73 6.95 -2.39 -0.02 1.71 16 47 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.10 0.95 8.07 -2.39 -0.02 0.93 16 49 H 0.07 1.22 6.55 -2.39 -0.02 1.21 16 50 H 0.10 3.87 7.82 -2.39 -0.02 3.85 16 51 H 0.10 3.91 7.83 -2.40 -0.02 3.89 16 52 H 0.28 15.84 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -78.65 418.91 0.57 -78.08 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.84 Total: 15.90 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 7.42 Total: -6.64 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -7.35 Total: -91.45 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.19 Total: -33.76 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.43 kcal Atomic # 16 Polarization: -9.52 SS G_CDS: -1.05 Total: -10.57 kcal Total: -78.65 0.57 -78.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815707.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.430 kcal (2) G-P(sol) polarization free energy of solvation -78.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds