Wall clock time and date at job start Wed Apr 1 2020 03:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47209 * 2 1 4 4 C 1.53001 * 109.47370 * 120.00394 * 2 1 3 5 5 H 1.09004 * 112.77387 * 50.27254 * 4 2 1 6 6 C 1.53235 * 113.38304 * 279.57215 * 4 2 1 7 7 C 1.53498 * 83.42917 * 219.29165 * 6 4 2 8 8 N 1.47060 * 113.46874 * 181.05905 * 4 2 1 9 9 C 1.34781 * 136.05721 * 321.93085 * 8 4 2 10 10 O 1.21348 * 120.00043 * 354.81382 * 9 8 4 11 11 C 1.49452 * 119.99575 * 174.81323 * 9 8 4 12 12 O 1.21341 * 120.00250 * 0.02562 * 11 9 8 13 13 N 1.34783 * 119.99294 * 180.02562 * 11 9 8 14 14 C 1.46507 * 119.99518 * 180.02562 * 13 11 9 15 15 H 1.09003 * 109.47323 * 34.99679 * 14 13 11 16 16 C 1.52999 * 109.46882 * 155.00049 * 14 13 11 17 17 C 1.50698 * 109.46984 * 294.99650 * 16 14 13 18 18 H 1.07999 * 120.00213 * 359.97438 * 17 16 14 19 19 C 1.37881 * 120.00047 * 180.02562 * 17 16 14 20 20 N 1.31517 * 119.99761 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00014 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47375 * 89.99567 * 21 19 17 23 23 H 1.48499 * 109.46873 * 209.99571 * 21 19 17 24 24 H 1.48493 * 109.46949 * 329.99290 * 21 19 17 25 25 C 1.50700 * 109.46803 * 274.99509 * 14 13 11 26 26 C 1.38238 * 119.99615 * 139.99894 * 25 14 13 27 27 C 1.38230 * 119.99960 * 180.25556 * 26 25 14 28 28 C 1.38237 * 120.00052 * 359.53418 * 27 26 25 29 29 C 1.38240 * 119.99763 * 0.42724 * 28 27 26 30 30 C 1.38230 * 120.00222 * 319.98065 * 25 14 13 31 31 H 1.08998 * 109.47131 * 64.95478 * 1 2 3 32 32 H 1.08998 * 109.47206 * 184.96152 * 1 2 3 33 33 H 1.09004 * 109.46711 * 304.96036 * 1 2 3 34 34 H 1.09007 * 109.46865 * 240.00326 * 2 1 3 35 35 H 1.09002 * 109.47162 * 173.46993 * 3 2 1 36 36 H 1.09000 * 109.47484 * 293.47051 * 3 2 1 37 37 H 1.09000 * 109.47298 * 53.47568 * 3 2 1 38 38 H 1.09001 * 114.32831 * 105.65737 * 6 4 2 39 39 H 1.09002 * 114.01942 * 332.89819 * 6 4 2 40 40 H 1.09005 * 113.46432 * 271.11735 * 7 6 4 41 41 H 1.09000 * 113.52442 * 140.69095 * 7 6 4 42 42 H 0.97001 * 120.00436 * 359.97438 * 13 11 9 43 43 H 1.08995 * 109.47408 * 54.99662 * 16 14 13 44 44 H 1.08999 * 109.47206 * 174.99955 * 16 14 13 45 45 H 0.96996 * 119.99782 * 180.02562 * 20 19 17 46 46 H 1.08001 * 119.99843 * 359.97438 * 26 25 14 47 47 H 1.08006 * 120.00276 * 179.72843 * 27 26 25 48 48 H 1.08001 * 120.00070 * 180.20967 * 28 27 26 49 49 H 1.08001 * 119.99920 * 179.78750 * 29 28 27 50 50 H 1.07997 * 120.00369 * 359.97438 * 30 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5751 -1.6967 1.3926 6 6 2.0223 0.1540 2.5068 7 6 3.3567 -0.5462 2.7990 8 7 3.5069 -0.7510 1.3504 9 6 4.5362 -0.8962 0.4925 10 8 4.3217 -1.1421 -0.6763 11 6 5.9415 -0.7542 0.9807 12 8 6.1559 -0.5086 2.1495 13 7 6.9708 -0.8988 0.1225 14 6 8.3485 -0.7602 0.6012 15 1 8.4220 -1.1527 1.6154 16 6 9.2888 -1.5424 -0.3180 17 6 8.9786 -3.0138 -0.2192 18 1 8.1900 -3.3568 0.4341 19 6 9.7023 -3.9223 -0.9621 20 7 10.6630 -3.5047 -1.7574 21 14 9.3174 -5.7462 -0.8402 22 1 8.2953 -6.1054 -1.8558 23 1 10.5545 -6.5305 -1.0841 24 1 8.7965 -6.0524 0.5162 25 6 8.7377 0.6957 0.5965 26 6 9.4893 1.2135 1.6347 27 6 9.8419 2.5501 1.6331 28 6 9.4510 3.3668 0.5885 29 6 8.7001 2.8488 -0.4501 30 6 8.3435 1.5132 -0.4461 31 1 -0.3633 0.4350 -0.9310 32 1 -0.3633 -1.0238 0.0889 33 1 -0.3633 0.5889 0.8423 34 1 1.8933 -0.5138 -0.8901 35 1 3.1238 1.4447 0.1169 36 1 1.7753 1.9215 -0.9426 37 1 1.5845 1.9889 0.8258 38 1 1.2267 -0.0883 3.2113 39 1 2.1125 1.2215 2.3056 40 1 3.2461 -1.4745 3.3595 41 1 4.1112 0.1154 3.2245 42 1 6.7994 -1.0954 -0.8118 43 1 9.1506 -1.2102 -1.3469 44 1 10.3212 -1.3676 -0.0153 45 1 11.1719 -4.1438 -2.2803 46 1 9.7972 0.5747 2.4493 47 1 10.4254 2.9557 2.4464 48 1 9.7294 4.4103 0.5856 49 1 8.3918 3.4876 -1.2646 50 1 7.7569 1.1086 -1.2576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261167004.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:50 Heat of formation + Delta-G solvation = -15.702404 kcal Electronic energy + Delta-G solvation = -30785.538697 eV Core-core repulsion = 26778.748399 eV Total energy + Delta-G solvation = -4006.790298 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.01293 -39.63986 -38.56524 -37.48847 -35.37605 -34.56928 -32.74487 -31.14506 -30.48438 -29.91379 -28.85107 -27.40238 -26.19815 -25.32351 -23.92042 -22.33890 -22.07089 -21.86625 -20.60069 -19.82168 -18.76260 -17.63944 -16.84517 -16.68057 -16.24056 -16.16685 -15.65102 -15.17325 -14.95678 -14.67414 -14.52979 -14.38328 -13.84574 -13.62960 -13.39159 -13.25619 -13.07819 -12.99029 -12.64035 -12.56734 -12.50638 -12.46016 -12.12230 -11.77430 -11.62028 -11.58444 -11.28514 -11.17211 -11.12256 -11.04054 -10.95874 -10.73716 -10.62077 -10.46937 -10.27861 -9.81554 -9.34939 -9.11065 -8.81934 -8.61874 -8.53059 -8.44979 -8.22761 -6.08804 -4.12505 1.72021 1.77322 1.80298 2.43085 3.29268 3.35789 3.39449 3.58874 3.70838 4.13971 4.20733 4.40868 4.57770 4.71134 4.76192 4.81396 4.93889 5.08696 5.23270 5.24923 5.26295 5.28379 5.33947 5.39783 5.42301 5.46216 5.50476 5.54229 5.69496 5.72365 5.76906 5.87369 5.89948 5.93911 5.97769 6.08648 6.16819 6.20197 6.30676 6.38788 6.51209 6.72742 6.81538 6.82567 7.04868 7.36708 7.45674 7.48428 7.55474 7.72745 7.86976 8.11143 8.23707 8.48671 8.92442 9.52799 11.01723 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007974 B = 0.003970 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3510.450668 B = 7050.486470 C = 9428.654946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.142 4.142 4 C 0.139 3.861 5 H 0.094 0.906 6 C -0.160 4.160 7 C 0.106 3.894 8 N -0.621 5.621 9 C 0.536 3.464 10 O -0.518 6.518 11 C 0.507 3.493 12 O -0.530 6.530 13 N -0.667 5.667 14 C 0.183 3.817 15 H 0.091 0.909 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.074 4.074 26 C -0.106 4.106 27 C -0.123 4.123 28 C -0.133 4.133 29 C -0.124 4.124 30 C -0.108 4.108 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.413 0.587 43 H 0.027 0.973 44 H 0.038 0.962 45 H 0.262 0.738 46 H 0.121 0.879 47 H 0.117 0.883 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.064 11.929 7.231 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C -0.200 4.200 4 C 0.037 3.963 5 H 0.112 0.888 6 C -0.198 4.198 7 C -0.017 4.017 8 N -0.357 5.357 9 C 0.321 3.679 10 O -0.393 6.393 11 C 0.286 3.714 12 O -0.407 6.407 13 N -0.317 5.317 14 C 0.080 3.920 15 H 0.109 0.891 16 C -0.014 4.014 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.075 4.075 26 C -0.125 4.125 27 C -0.141 4.141 28 C -0.151 4.151 29 C -0.142 4.142 30 C -0.126 4.126 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.249 0.751 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.139 0.861 47 H 0.135 0.865 48 H 0.132 0.868 49 H 0.134 0.866 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.650 11.854 7.132 20.888 hybrid contribution -0.077 -1.301 -0.520 1.403 sum -15.727 10.554 6.612 20.061 Atomic orbital electron populations 1.21748 0.94330 1.01828 1.01995 1.21288 0.95884 0.96907 0.98418 1.21844 1.01373 0.95334 1.01409 1.22810 0.79351 0.98743 0.95427 0.88801 1.23646 0.98046 1.00887 0.97180 1.23001 0.96723 1.00335 0.81658 1.49423 1.05881 1.70633 1.09787 1.20006 0.85398 0.77334 0.85203 1.90746 1.85082 1.46612 1.16831 1.19876 0.85782 0.79167 0.86532 1.90678 1.85321 1.47946 1.16747 1.45858 1.05413 1.67328 1.13108 1.20410 0.80151 0.89969 1.01479 0.89110 1.19414 0.93864 0.94159 0.93929 1.21109 1.18249 0.91055 1.25691 0.92461 1.24969 0.94886 0.99003 0.95129 1.69954 1.21462 1.34581 1.26940 0.86588 0.77778 0.85129 0.78537 1.20575 1.21156 1.19870 1.20479 0.96639 0.96391 0.94013 1.21002 0.98232 0.95147 0.98112 1.21040 1.00552 0.93947 0.98549 1.21013 0.99734 0.99346 0.95026 1.21051 0.99166 0.95431 0.98544 1.20956 1.00008 0.93512 0.98111 0.92370 0.92576 0.92485 0.89545 0.92703 0.92721 0.92415 0.89192 0.88012 0.89637 0.88848 0.75057 0.95493 0.94371 0.92817 0.86080 0.86526 0.86770 0.86649 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.16 37.16 0.34 -0.70 16 2 C -0.11 -1.07 2.74 -90.62 -0.25 -1.32 16 3 C -0.14 -1.44 8.17 37.16 0.30 -1.13 16 4 C 0.14 1.41 3.82 -72.54 -0.28 1.13 16 5 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 6 C -0.16 -1.23 7.66 -26.35 -0.20 -1.44 16 7 C 0.11 1.12 7.72 -8.51 -0.07 1.06 16 8 N -0.62 -8.45 3.00 -178.13 -0.53 -8.98 16 9 C 0.54 9.24 7.52 -11.58 -0.09 9.16 16 10 O -0.52 -9.87 16.23 5.50 0.09 -9.78 16 11 C 0.51 9.55 7.85 -11.58 -0.09 9.45 16 12 O -0.53 -10.48 14.78 5.50 0.08 -10.40 16 13 N -0.67 -13.02 4.03 -55.36 -0.22 -13.25 16 14 C 0.18 3.78 2.12 -69.08 -0.15 3.63 16 15 H 0.09 1.98 7.44 -51.93 -0.39 1.59 16 16 C 0.02 0.57 4.49 -27.88 -0.13 0.45 16 17 C -0.52 -14.12 8.84 -34.44 -0.30 -14.42 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 21 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 C -0.07 -1.38 4.91 -104.62 -0.51 -1.89 16 26 C -0.11 -1.81 9.67 -39.58 -0.38 -2.19 16 27 C -0.12 -1.81 10.05 -39.58 -0.40 -2.20 16 28 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 29 C -0.12 -1.86 10.05 -39.58 -0.40 -2.25 16 30 C -0.11 -1.85 9.32 -39.58 -0.37 -2.22 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 1.12 7.39 -51.92 -0.38 0.73 16 35 H 0.05 0.69 7.16 -51.93 -0.37 0.32 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.47 6.50 -51.93 -0.34 0.13 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.79 5.68 -51.93 -0.29 0.49 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.11 7.21 -51.93 -0.37 0.73 16 42 H 0.41 8.09 8.07 -40.82 -0.33 7.76 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.12 1.95 8.04 -52.49 -0.42 1.52 16 47 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 48 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 49 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 50 H 0.12 1.98 7.72 -52.49 -0.41 1.57 16 LS Contribution 410.49 15.07 6.19 6.19 Total: -1.00 -31.76 410.49 -10.06 -41.83 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.92 Total: 8.56 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -3.46 Total: -5.54 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.02 Total: -47.36 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.17 Total: -20.18 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.76 -10.06 -41.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261167004.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.124 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds