Wall clock time and date at job start Wed Apr 1 2020 03:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47321 * 2 1 4 4 C 1.53003 * 109.47492 * 120.00121 * 2 1 3 5 5 H 1.08997 * 112.78137 * 189.34406 * 4 2 1 6 6 C 1.53759 * 113.54731 * 320.19717 * 4 2 1 7 7 C 1.53494 * 83.25675 * 140.98653 * 6 4 2 8 8 N 1.47067 * 87.98638 * 333.75980 * 7 6 4 9 9 C 1.34779 * 136.06388 * 207.07967 * 8 7 6 10 10 O 1.21338 * 120.00320 * 174.97780 * 9 8 7 11 11 C 1.49451 * 119.99581 * 354.98401 * 9 8 7 12 12 O 1.21355 * 120.00029 * 359.97438 * 11 9 8 13 13 N 1.34775 * 119.99935 * 179.97438 * 11 9 8 14 14 C 1.46507 * 119.99626 * 185.05869 * 13 11 9 15 15 H 1.08992 * 109.47396 * 32.30222 * 14 13 11 16 16 C 1.53003 * 109.46476 * 152.30166 * 14 13 11 17 17 C 1.50705 * 109.46959 * 294.52834 * 16 14 13 18 18 H 1.08003 * 120.00250 * 5.01881 * 17 16 14 19 19 C 1.37879 * 119.99829 * 185.01657 * 17 16 14 20 20 N 1.31511 * 119.99803 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00019 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46959 * 89.99992 * 21 19 17 23 23 H 1.48497 * 109.46867 * 209.99995 * 21 19 17 24 24 H 1.48489 * 109.47092 * 329.99959 * 21 19 17 25 25 C 1.50700 * 109.47013 * 272.29300 * 14 13 11 26 26 C 1.38237 * 120.00373 * 319.73637 * 25 14 13 27 27 C 1.38234 * 119.99602 * 179.78637 * 26 25 14 28 28 C 1.38234 * 120.00473 * 0.43782 * 27 26 25 29 29 C 1.38233 * 119.99742 * 359.81149 * 28 27 26 30 30 C 1.38232 * 120.00140 * 359.97438 * 29 28 27 31 31 H 1.09003 * 109.46841 * 307.40429 * 1 2 3 32 32 H 1.09002 * 109.47313 * 67.40220 * 1 2 3 33 33 H 1.09002 * 109.47237 * 187.40773 * 1 2 3 34 34 H 1.09003 * 109.46921 * 240.00187 * 2 1 3 35 35 H 1.09003 * 109.46666 * 300.00051 * 3 2 1 36 36 H 1.08990 * 109.46842 * 59.99960 * 3 2 1 37 37 H 1.09003 * 109.46991 * 180.02562 * 3 2 1 38 38 H 1.08995 * 114.39594 * 27.42431 * 6 4 2 39 39 H 1.09008 * 114.08606 * 254.52602 * 6 4 2 40 40 H 1.08998 * 113.47249 * 218.98143 * 7 6 4 41 41 H 1.09002 * 113.47020 * 88.54081 * 7 6 4 42 42 H 0.96993 * 120.00099 * 5.06287 * 13 11 9 43 43 H 1.08994 * 109.47391 * 54.53185 * 16 14 13 44 44 H 1.09003 * 109.46933 * 174.53552 * 16 14 13 45 45 H 0.96996 * 119.99910 * 179.97438 * 20 19 17 46 46 H 1.07993 * 119.99813 * 359.97438 * 26 25 14 47 47 H 1.08005 * 119.99599 * 180.27083 * 27 26 25 48 48 H 1.07999 * 120.00101 * 179.83525 * 28 27 26 49 49 H 1.07996 * 120.00334 * 179.97438 * 29 28 27 50 50 H 1.08004 * 120.00057 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1156 -0.6136 1.3891 6 6 1.2239 -0.4099 2.5146 7 6 1.4452 -1.9008 2.8051 8 7 1.5717 -2.1114 1.3551 9 6 1.3584 -3.1312 0.5002 10 8 1.4773 -2.9564 -0.6946 11 6 0.9753 -4.4775 1.0239 12 8 0.8567 -4.6525 2.2189 13 7 0.7614 -5.4973 0.1691 14 6 0.2788 -6.7859 0.6721 15 1 -0.3654 -6.6206 1.5356 16 6 -0.5133 -7.4977 -0.4264 17 6 -1.7600 -6.7101 -0.7374 18 1 -1.9267 -5.7537 -0.2641 19 6 -2.6878 -7.2106 -1.6261 20 7 -3.7755 -6.5231 -1.8978 21 14 -2.3999 -8.8651 -2.4441 22 1 -2.9895 -9.9405 -1.6068 23 1 -3.0406 -8.8731 -3.7837 24 1 -0.9406 -9.0969 -2.5919 25 6 1.4533 -7.6387 1.0774 26 6 2.5976 -7.6528 0.3019 27 6 3.6765 -8.4317 0.6761 28 6 3.6079 -9.2035 1.8209 29 6 2.4618 -9.1934 2.5936 30 6 1.3844 -8.4111 2.2218 31 1 -0.3633 0.6243 0.8164 32 1 -0.3634 0.3949 -0.9488 33 1 -0.3634 -1.0191 0.1325 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.1301 1.4425 -0.0005 38 1 0.1848 -0.1409 2.3252 39 1 1.7246 0.2606 3.2131 40 1 0.5751 -2.3921 3.2407 41 1 2.3640 -2.1042 3.3551 42 1 0.9271 -5.3781 -0.7792 43 1 0.1001 -7.5764 -1.3239 44 1 -0.7896 -8.4959 -0.0864 45 1 -4.4280 -6.8750 -2.5233 46 1 2.6497 -7.0529 -0.5946 47 1 4.5721 -8.4394 0.0725 48 1 4.4499 -9.8141 2.1117 49 1 2.4079 -9.7966 3.4877 50 1 0.4888 -8.4034 2.8253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261167006.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:01 Heat of formation + Delta-G solvation = -11.329527 kcal Electronic energy + Delta-G solvation = -30732.772470 eV Core-core repulsion = 26726.171795 eV Total energy + Delta-G solvation = -4006.600676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.96872 -39.69044 -38.61985 -37.47049 -35.46353 -34.50325 -32.67495 -31.27353 -30.59163 -29.87646 -29.34321 -27.27633 -26.19978 -25.46255 -23.86283 -22.40327 -21.90366 -21.80141 -20.54676 -19.88105 -18.76591 -17.54698 -17.12580 -16.78491 -16.40422 -16.16501 -15.57907 -15.23647 -15.00786 -14.68102 -14.37742 -14.35512 -13.87735 -13.62746 -13.39883 -13.22181 -13.14644 -13.03142 -12.70698 -12.61021 -12.45819 -12.43075 -12.42206 -11.86206 -11.68102 -11.55681 -11.37267 -11.20705 -11.13374 -11.06258 -10.94665 -10.77291 -10.60193 -10.27387 -10.21517 -9.87312 -9.37035 -9.13607 -8.79034 -8.68514 -8.62919 -8.60068 -8.35920 -6.10602 -4.10815 1.61614 1.66610 1.79711 2.45206 3.26491 3.34990 3.37440 3.57659 3.69867 4.07994 4.19799 4.38702 4.64536 4.75692 4.80863 4.81424 5.00696 5.12483 5.14751 5.14833 5.22969 5.23739 5.28887 5.39312 5.45502 5.47818 5.55185 5.61798 5.76642 5.77372 5.78015 5.81193 5.81639 5.95179 6.04564 6.06784 6.17214 6.25423 6.29652 6.32622 6.35706 6.62065 6.70607 6.72404 6.88419 6.99122 7.19746 7.26141 7.54406 7.63167 7.67880 8.09327 8.42335 8.46114 8.93977 9.49769 11.02241 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008678 B = 0.003834 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.956274 B = 7302.139269 C = 9595.931707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C -0.141 4.141 4 C 0.139 3.861 5 H 0.094 0.906 6 C -0.160 4.160 7 C 0.108 3.892 8 N -0.621 5.621 9 C 0.537 3.463 10 O -0.515 6.515 11 C 0.509 3.491 12 O -0.528 6.528 13 N -0.669 5.669 14 C 0.194 3.806 15 H 0.097 0.903 16 C -0.013 4.013 17 C -0.523 4.523 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.876 3.124 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 C -0.079 4.079 26 C -0.109 4.109 27 C -0.124 4.124 28 C -0.132 4.132 29 C -0.122 4.122 30 C -0.106 4.106 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.412 0.588 43 H 0.024 0.976 44 H 0.033 0.967 45 H 0.264 0.736 46 H 0.118 0.882 47 H 0.116 0.884 48 H 0.115 0.885 49 H 0.118 0.882 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.834 9.041 9.042 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.199 4.199 4 C 0.037 3.963 5 H 0.112 0.888 6 C -0.197 4.197 7 C -0.014 4.014 8 N -0.357 5.357 9 C 0.321 3.679 10 O -0.390 6.390 11 C 0.289 3.711 12 O -0.405 6.405 13 N -0.319 5.319 14 C 0.090 3.910 15 H 0.115 0.885 16 C -0.051 4.051 17 C -0.561 4.561 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.534 5.534 21 Si 0.703 3.297 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.190 1.190 25 C -0.080 4.080 26 C -0.127 4.127 27 C -0.142 4.142 28 C -0.150 4.150 29 C -0.140 4.140 30 C -0.124 4.124 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.249 0.751 43 H 0.042 0.958 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.133 0.867 49 H 0.136 0.864 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.562 8.793 8.959 19.226 hybrid contribution 0.135 -0.970 -1.002 1.401 sum 14.697 7.823 7.957 18.453 Atomic orbital electron populations 1.21833 0.94482 1.02263 1.01403 1.21285 0.96869 0.95983 0.98181 1.21756 1.00729 0.95413 1.02041 1.22924 0.98621 0.79183 0.95587 0.88832 1.23737 1.02323 0.96623 0.97057 1.22957 1.02957 0.93910 0.81610 1.49424 1.64761 1.11837 1.09698 1.19928 0.78149 0.84289 0.85501 1.90747 1.50503 1.83098 1.14636 1.19889 0.79168 0.85213 0.86810 1.90691 1.50956 1.83762 1.15045 1.45728 1.63574 1.11065 1.11541 1.20128 0.90940 0.80230 0.99667 0.88527 1.19883 0.95926 0.96362 0.92885 1.20981 1.02351 1.06474 1.26298 0.90672 1.24971 0.94792 0.97144 0.96060 1.69900 1.10037 1.38360 1.35113 0.86847 0.79021 0.84731 0.79133 1.20170 1.21283 1.18967 1.20516 0.95856 0.97177 0.94487 1.20969 0.93162 0.99087 0.99509 1.21063 0.98419 0.97505 0.97216 1.21036 0.98039 1.00072 0.95844 1.21063 0.93714 0.99522 0.99743 1.21034 0.98687 0.96517 0.96196 0.92603 0.92667 0.92352 0.89584 0.92330 0.92497 0.92752 0.87869 0.89251 0.89175 0.89710 0.75149 0.95805 0.94837 0.92597 0.86412 0.86566 0.86676 0.86407 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.17 37.16 0.30 -1.39 16 2 C -0.10 -1.14 2.64 -90.62 -0.24 -1.38 16 3 C -0.14 -1.13 9.16 37.16 0.34 -0.79 16 4 C 0.14 1.45 3.84 -72.26 -0.28 1.17 16 5 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.16 -1.32 7.68 -26.08 -0.20 -1.52 16 7 C 0.11 1.18 7.51 -8.51 -0.06 1.12 16 8 N -0.62 -8.60 2.97 -177.80 -0.53 -9.13 16 9 C 0.54 9.37 7.55 -11.58 -0.09 9.28 16 10 O -0.51 -9.91 16.02 5.51 0.09 -9.82 16 11 C 0.51 9.63 7.86 -11.59 -0.09 9.54 16 12 O -0.53 -10.48 15.00 5.49 0.08 -10.40 16 13 N -0.67 -12.87 4.01 -55.36 -0.22 -13.09 16 14 C 0.19 3.87 2.11 -69.08 -0.15 3.72 16 15 H 0.10 2.07 7.43 -51.93 -0.39 1.68 16 16 C -0.01 -0.29 3.57 -27.88 -0.10 -0.39 16 17 C -0.52 -14.27 9.40 -34.44 -0.32 -14.60 16 18 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 21 Si 0.88 21.18 27.37 -169.99 -4.65 16.52 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.15 6.69 56.52 0.38 -5.77 16 25 C -0.08 -1.40 4.94 -104.62 -0.52 -1.92 16 26 C -0.11 -1.77 9.32 -39.58 -0.37 -2.14 16 27 C -0.12 -1.75 10.05 -39.58 -0.40 -2.14 16 28 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 29 C -0.12 -1.70 10.05 -39.59 -0.40 -2.10 16 30 C -0.11 -1.71 9.67 -39.58 -0.38 -2.09 16 31 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.87 7.11 -51.93 -0.37 0.51 16 34 H 0.09 1.17 7.33 -51.93 -0.38 0.79 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.90 5.78 -51.93 -0.30 0.60 16 39 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.09 1.10 7.60 -51.93 -0.39 0.71 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.41 7.84 8.11 -40.82 -0.33 7.51 16 43 H 0.02 0.53 7.55 -51.93 -0.39 0.14 16 44 H 0.03 0.76 7.29 -51.93 -0.38 0.38 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.12 1.84 7.73 -52.49 -0.41 1.43 16 47 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 48 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 49 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 50 H 0.12 1.87 8.04 -52.48 -0.42 1.45 16 LS Contribution 407.29 15.07 6.14 6.14 Total: -1.00 -32.68 407.29 -9.67 -42.35 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.91 Total: 9.58 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -3.44 Total: -5.82 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.02 Total: -48.56 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.17 Total: -20.21 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.65 Total: 16.52 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.68 -9.67 -42.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261167006.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.022 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds