Wall clock time and date at job start Wed Apr 1 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47321 * 2 1 4 4 C 1.53003 * 109.47492 * 120.00121 * 2 1 3 5 5 H 1.08997 * 112.78137 * 189.34406 * 4 2 1 6 6 C 1.53759 * 113.54731 * 320.19717 * 4 2 1 7 7 C 1.53494 * 83.25675 * 140.98653 * 6 4 2 8 8 N 1.47067 * 87.98638 * 333.75980 * 7 6 4 9 9 C 1.34779 * 136.06388 * 207.07967 * 8 7 6 10 10 O 1.21338 * 120.00320 * 174.97780 * 9 8 7 11 11 C 1.49451 * 119.99581 * 354.98401 * 9 8 7 12 12 O 1.21355 * 120.00029 * 359.97438 * 11 9 8 13 13 N 1.34775 * 119.99935 * 179.97438 * 11 9 8 14 14 C 1.46507 * 119.99626 * 185.05869 * 13 11 9 15 15 H 1.08992 * 109.47396 * 32.30222 * 14 13 11 16 16 C 1.53003 * 109.46476 * 152.30166 * 14 13 11 17 17 C 1.50705 * 109.46959 * 294.52834 * 16 14 13 18 18 H 1.08003 * 120.00250 * 5.01881 * 17 16 14 19 19 C 1.37879 * 119.99829 * 185.01657 * 17 16 14 20 20 N 1.31511 * 119.99803 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00019 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46959 * 89.99992 * 21 19 17 23 23 H 1.48497 * 109.46867 * 209.99995 * 21 19 17 24 24 H 1.48489 * 109.47092 * 329.99959 * 21 19 17 25 25 C 1.50700 * 109.47013 * 272.29300 * 14 13 11 26 26 C 1.38237 * 120.00373 * 319.73637 * 25 14 13 27 27 C 1.38234 * 119.99602 * 179.78637 * 26 25 14 28 28 C 1.38234 * 120.00473 * 0.43782 * 27 26 25 29 29 C 1.38233 * 119.99742 * 359.81149 * 28 27 26 30 30 C 1.38232 * 120.00140 * 359.97438 * 29 28 27 31 31 H 1.09003 * 109.46841 * 307.40429 * 1 2 3 32 32 H 1.09002 * 109.47313 * 67.40220 * 1 2 3 33 33 H 1.09002 * 109.47237 * 187.40773 * 1 2 3 34 34 H 1.09003 * 109.46921 * 240.00187 * 2 1 3 35 35 H 1.09003 * 109.46666 * 300.00051 * 3 2 1 36 36 H 1.08990 * 109.46842 * 59.99960 * 3 2 1 37 37 H 1.09003 * 109.46991 * 180.02562 * 3 2 1 38 38 H 1.08995 * 114.39594 * 27.42431 * 6 4 2 39 39 H 1.09008 * 114.08606 * 254.52602 * 6 4 2 40 40 H 1.08998 * 113.47249 * 218.98143 * 7 6 4 41 41 H 1.09002 * 113.47020 * 88.54081 * 7 6 4 42 42 H 0.96993 * 120.00099 * 5.06287 * 13 11 9 43 43 H 1.08994 * 109.47391 * 54.53185 * 16 14 13 44 44 H 1.09003 * 109.46933 * 174.53552 * 16 14 13 45 45 H 0.96996 * 119.99910 * 179.97438 * 20 19 17 46 46 H 1.07993 * 119.99813 * 359.97438 * 26 25 14 47 47 H 1.08005 * 119.99599 * 180.27083 * 27 26 25 48 48 H 1.07999 * 120.00101 * 179.83525 * 28 27 26 49 49 H 1.07996 * 120.00334 * 179.97438 * 29 28 27 50 50 H 1.08004 * 120.00057 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1156 -0.6136 1.3891 6 6 1.2239 -0.4099 2.5146 7 6 1.4452 -1.9008 2.8051 8 7 1.5717 -2.1114 1.3551 9 6 1.3584 -3.1312 0.5002 10 8 1.4773 -2.9564 -0.6946 11 6 0.9753 -4.4775 1.0239 12 8 0.8567 -4.6525 2.2189 13 7 0.7614 -5.4973 0.1691 14 6 0.2788 -6.7859 0.6721 15 1 -0.3654 -6.6206 1.5356 16 6 -0.5133 -7.4977 -0.4264 17 6 -1.7600 -6.7101 -0.7374 18 1 -1.9267 -5.7537 -0.2641 19 6 -2.6878 -7.2106 -1.6261 20 7 -3.7755 -6.5231 -1.8978 21 14 -2.3999 -8.8651 -2.4441 22 1 -2.9895 -9.9405 -1.6068 23 1 -3.0406 -8.8731 -3.7837 24 1 -0.9406 -9.0969 -2.5919 25 6 1.4533 -7.6387 1.0774 26 6 2.5976 -7.6528 0.3019 27 6 3.6765 -8.4317 0.6761 28 6 3.6079 -9.2035 1.8209 29 6 2.4618 -9.1934 2.5936 30 6 1.3844 -8.4111 2.2218 31 1 -0.3633 0.6243 0.8164 32 1 -0.3634 0.3949 -0.9488 33 1 -0.3634 -1.0191 0.1325 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.1301 1.4425 -0.0005 38 1 0.1848 -0.1409 2.3252 39 1 1.7246 0.2606 3.2131 40 1 0.5751 -2.3921 3.2407 41 1 2.3640 -2.1042 3.3551 42 1 0.9271 -5.3781 -0.7792 43 1 0.1001 -7.5764 -1.3239 44 1 -0.7896 -8.4959 -0.0864 45 1 -4.4280 -6.8750 -2.5233 46 1 2.6497 -7.0529 -0.5946 47 1 4.5721 -8.4394 0.0725 48 1 4.4499 -9.8141 2.1117 49 1 2.4079 -9.7966 3.4877 50 1 0.4888 -8.4034 2.8253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261167006.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:59 Heat of formation + Delta-G solvation = -31.199385 kcal Electronic energy + Delta-G solvation = -30733.634092 eV Core-core repulsion = 26726.171795 eV Total energy + Delta-G solvation = -4007.462297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.13338 -40.98717 -39.84418 -38.84070 -37.01648 -35.42870 -34.74934 -32.75098 -31.74258 -31.03001 -30.96843 -28.11112 -27.44530 -26.76088 -25.19792 -23.67002 -23.33658 -22.90437 -21.70298 -21.32350 -20.01115 -19.11126 -18.72387 -18.10699 -17.74381 -17.16397 -16.96256 -16.50142 -16.47831 -16.02972 -15.92670 -15.46665 -15.22093 -14.85578 -14.74782 -14.53923 -14.30053 -14.19878 -14.13459 -13.88520 -13.86887 -13.62930 -13.29251 -13.17248 -13.08455 -12.72849 -12.57902 -12.54618 -12.44102 -12.21387 -12.00364 -11.93708 -11.83045 -11.82512 -11.78170 -11.50004 -11.13620 -10.81887 -10.53152 -10.24600 -9.85505 -9.79908 -9.59978 -8.31750 -6.37194 0.36000 0.43502 0.51910 1.22102 1.34303 1.36044 1.47310 2.14895 2.32695 2.41930 2.90894 3.03653 3.27689 3.44136 3.80967 3.83062 3.91014 3.96423 3.99264 4.16876 4.16966 4.25956 4.31289 4.34991 4.46613 4.49246 4.61297 4.64347 4.67856 4.71973 4.75317 4.78328 4.89402 4.95726 5.02857 5.05271 5.08346 5.14113 5.16196 5.23172 5.25917 5.36290 5.39652 5.48251 5.51256 5.60862 5.61290 5.74645 6.13462 6.14375 6.22156 6.39434 6.66696 6.69670 6.97630 7.26839 8.84923 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008678 B = 0.003834 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.956274 B = 7302.139269 C = 9595.931707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C -0.133 4.133 4 C 0.133 3.867 5 H 0.121 0.879 6 C -0.134 4.134 7 C 0.099 3.901 8 N -0.623 5.623 9 C 0.530 3.470 10 O -0.547 6.547 11 C 0.503 3.497 12 O -0.543 6.543 13 N -0.672 5.672 14 C 0.204 3.796 15 H 0.070 0.930 16 C -0.004 4.004 17 C -0.525 4.525 18 H 0.029 0.971 19 C 0.011 3.989 20 N -0.947 5.947 21 Si 0.947 3.053 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.246 1.246 25 C -0.102 4.102 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.123 4.123 29 C -0.120 4.120 30 C -0.124 4.124 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.135 0.865 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.411 0.589 43 H 0.031 0.969 44 H 0.040 0.960 45 H 0.267 0.733 46 H 0.114 0.886 47 H 0.144 0.856 48 H 0.153 0.847 49 H 0.148 0.852 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.080 8.638 10.505 22.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.191 4.191 4 C 0.032 3.968 5 H 0.138 0.862 6 C -0.172 4.172 7 C -0.023 4.023 8 N -0.358 5.358 9 C 0.314 3.686 10 O -0.425 6.425 11 C 0.284 3.716 12 O -0.421 6.421 13 N -0.322 5.322 14 C 0.100 3.900 15 H 0.088 0.912 16 C -0.042 4.042 17 C -0.563 4.563 18 H 0.047 0.953 19 C -0.186 4.186 20 N -0.587 5.587 21 Si 0.770 3.230 22 H -0.190 1.190 23 H -0.211 1.211 24 H -0.169 1.169 25 C -0.103 4.103 26 C -0.142 4.142 27 C -0.141 4.141 28 C -0.141 4.141 29 C -0.137 4.137 30 C -0.143 4.143 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.153 0.847 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.246 0.754 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.132 0.868 47 H 0.162 0.838 48 H 0.170 0.830 49 H 0.166 0.834 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.830 8.422 10.472 22.328 hybrid contribution -0.869 -0.747 -1.335 1.759 sum 16.962 7.675 9.137 20.738 Atomic orbital electron populations 1.21825 0.95658 1.00127 1.02156 1.21253 0.95827 0.97989 0.97170 1.21700 1.01510 0.92850 1.03015 1.23352 1.00466 0.76666 0.96301 0.86155 1.23693 1.02154 0.95195 0.96119 1.23277 1.03358 0.95761 0.79874 1.49736 1.62843 1.12243 1.10951 1.19642 0.78858 0.84467 0.85629 1.90717 1.52542 1.83521 1.15707 1.20317 0.78704 0.85931 0.86634 1.90655 1.51733 1.84184 1.15501 1.45741 1.63561 1.11321 1.11540 1.19786 0.91866 0.80810 0.97523 0.91202 1.19742 0.94198 0.96077 0.94184 1.21191 1.04312 1.05204 1.25566 0.95260 1.25924 0.94333 1.01515 0.96831 1.70063 1.11444 1.40757 1.36444 0.85712 0.80012 0.79416 0.77866 1.19017 1.21082 1.16894 1.20286 0.95560 0.98235 0.96223 1.21067 0.93598 1.00020 0.99554 1.21413 0.98432 0.96500 0.97801 1.21502 0.98668 0.99223 0.94724 1.21419 0.92937 0.98731 1.00660 1.21190 0.99857 0.97248 0.95987 0.89998 0.93248 0.96376 0.92970 0.92539 0.90366 0.91429 0.88426 0.84691 0.91183 0.87363 0.75353 0.95077 0.94199 0.92457 0.86793 0.83788 0.82956 0.83420 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.17 71.98 0.59 -2.85 16 2 C -0.10 -2.21 2.64 -10.79 -0.03 -2.24 16 3 C -0.13 -1.80 9.16 71.98 0.66 -1.14 16 4 C 0.13 2.55 3.84 41.88 0.16 2.71 16 5 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 6 C -0.13 -1.85 7.68 31.02 0.24 -1.61 16 7 C 0.10 2.06 7.51 83.18 0.63 2.68 16 8 N -0.62 -17.56 2.97 -834.81 -2.48 -20.04 16 9 C 0.53 19.75 7.55 87.27 0.66 20.41 16 10 O -0.55 -22.69 16.02 -3.21 -0.05 -22.74 16 11 C 0.50 20.44 7.86 87.27 0.69 21.12 16 12 O -0.54 -22.87 15.00 -3.26 -0.05 -22.92 16 13 N -0.67 -27.87 4.01 -447.42 -1.80 -29.66 16 14 C 0.20 8.62 2.11 44.24 0.09 8.71 16 15 H 0.07 3.25 7.43 -2.39 -0.02 3.24 16 16 C 0.00 -0.20 3.57 29.85 0.11 -0.10 16 17 C -0.52 -30.28 9.40 25.60 0.24 -30.04 16 18 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 19 C 0.01 0.67 5.47 84.66 0.46 1.13 16 20 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 21 Si 0.95 44.27 27.37 68.60 1.88 46.14 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.25 -10.62 6.69 99.48 0.67 -9.96 16 25 C -0.10 -3.65 4.94 -19.86 -0.10 -3.75 16 26 C -0.12 -3.96 9.32 22.27 0.21 -3.75 16 27 C -0.12 -3.14 10.05 22.27 0.22 -2.92 16 28 C -0.12 -2.79 10.05 22.27 0.22 -2.57 16 29 C -0.12 -2.99 10.05 22.27 0.22 -2.77 16 30 C -0.12 -3.96 9.67 22.27 0.22 -3.75 16 31 H 0.08 1.52 6.57 -2.39 -0.02 1.51 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.02 0.56 7.11 -2.39 -0.02 0.55 16 34 H 0.05 1.48 7.33 -2.39 -0.02 1.47 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 1.50 5.78 -2.39 -0.01 1.49 16 39 H 0.14 0.77 8.14 -2.38 -0.02 0.76 16 40 H 0.07 1.76 7.60 -2.39 -0.02 1.74 16 41 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.41 16.98 8.11 -92.71 -0.75 16.23 16 43 H 0.03 1.41 7.55 -2.39 -0.02 1.40 16 44 H 0.04 1.82 7.29 -2.39 -0.02 1.80 16 45 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 46 H 0.11 3.61 7.73 -2.91 -0.02 3.59 16 47 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 48 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 49 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 50 H 0.12 3.75 8.04 -2.91 -0.02 3.72 16 Total: -1.00 -77.52 407.29 3.43 -74.09 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: 0.15 Total: 35.53 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 5.49 Total: -0.72 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -3.98 Total: -109.38 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -0.10 Total: -45.66 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.14 kcal Total: -77.52 3.43 -74.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261167006.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.891 kcal (2) G-P(sol) polarization free energy of solvation -77.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds