Wall clock time and date at job start Wed Apr 1 2020 03:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32997 * 119.99763 * 2 1 4 4 C 1.50699 * 119.99773 * 180.02562 * 3 2 1 5 5 C 1.47104 * 120.00006 * 359.97438 * 3 2 1 6 6 O 1.21612 * 119.99823 * 264.02830 * 5 3 2 7 7 N 1.34772 * 119.99644 * 84.02725 * 5 3 2 8 8 C 1.47079 * 120.88204 * 175.09625 * 7 5 3 9 9 C 1.53239 * 108.52522 * 231.21274 * 8 7 5 10 10 N 1.46896 * 109.33788 * 306.16858 * 9 8 7 11 11 C 1.46903 * 111.00211 * 187.25528 * 10 9 8 12 12 C 1.50693 * 109.47361 * 170.00117 * 11 10 9 13 13 C 1.38299 * 119.93317 * 269.72531 * 12 11 10 14 14 C 1.38098 * 120.07419 * 179.72335 * 13 12 11 15 15 C 1.38879 * 119.92668 * 0.55085 * 14 13 12 16 16 O 1.35750 * 120.06929 * 179.74305 * 15 14 13 17 17 C 1.34826 * 117.00221 * 174.21542 * 16 15 14 18 18 H 1.08002 * 119.99786 * 5.08018 * 17 16 15 19 19 C 1.38658 * 120.00231 * 185.08441 * 17 16 15 20 20 N 1.31550 * 119.99704 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99963 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47216 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47228 * 119.99714 * 21 19 17 24 24 H 1.48501 * 109.46974 * 239.99773 * 21 19 17 25 25 C 1.38879 * 119.86557 * 359.72291 * 15 14 13 26 26 C 1.38104 * 119.92649 * 0.02562 * 25 15 14 27 27 C 1.46902 * 111.27170 * 63.10517 * 10 9 8 28 28 C 1.47085 * 120.88452 * 355.12679 * 7 5 3 29 29 H 1.08998 * 109.47052 * 299.99929 * 1 2 3 30 30 H 1.08993 * 109.47279 * 60.00352 * 1 2 3 31 31 H 1.09007 * 109.46623 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.99959 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.46903 * 275.01005 * 4 3 2 34 34 H 1.08998 * 109.47776 * 35.00827 * 4 3 2 35 35 H 1.08996 * 109.47210 * 155.01459 * 4 3 2 36 36 H 1.08998 * 109.62839 * 111.49631 * 8 7 5 37 37 H 1.09000 * 109.78838 * 351.01749 * 8 7 5 38 38 H 1.09000 * 109.49236 * 186.20880 * 9 8 7 39 39 H 1.08997 * 109.49187 * 66.12637 * 9 8 7 40 40 H 1.09002 * 109.47075 * 290.00020 * 11 10 9 41 41 H 1.08995 * 109.47039 * 49.99512 * 11 10 9 42 42 H 1.08007 * 119.96180 * 0.02562 * 13 12 11 43 43 H 1.08002 * 120.03797 * 180.26731 * 14 13 12 44 44 H 0.97000 * 120.00068 * 179.97438 * 20 19 17 45 45 H 1.07995 * 120.03979 * 179.97438 * 25 15 14 46 46 H 1.07998 * 119.96380 * 180.02562 * 26 25 15 47 47 H 1.08997 * 109.49100 * 56.85285 * 27 10 9 48 48 H 1.08994 * 109.49387 * 176.93669 * 27 10 9 49 49 H 1.09000 * 109.62456 * 248.50162 * 28 7 5 50 50 H 1.09004 * 109.62681 * 9.07967 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6789 1.1518 -0.0006 5 6 1.4364 2.4257 -0.0006 6 8 1.2276 3.0069 -1.0483 7 7 0.9938 2.9488 1.1600 8 6 0.3511 4.2712 1.1956 9 6 1.0374 5.1172 2.2733 10 7 1.0245 4.3859 3.5473 11 6 1.5176 5.2299 4.6439 12 6 1.2629 4.5425 5.9605 13 6 0.0777 4.7653 6.6374 14 6 -0.1612 4.1324 7.8413 15 6 0.7952 3.2803 8.3779 16 8 0.5656 2.6607 9.5637 17 6 1.4798 1.7564 9.9690 18 1 2.3865 1.6129 9.4000 19 6 1.2560 1.0107 11.1164 20 7 0.1519 1.1859 11.8097 21 14 2.5231 -0.2416 11.6783 22 1 3.6678 -0.2464 10.7322 23 1 3.0045 0.1165 13.0367 24 1 1.9040 -1.5910 11.7123 25 6 1.9868 3.0629 7.6985 26 6 2.2175 3.6948 6.4924 27 6 1.7965 3.1396 3.4541 28 6 1.1413 2.2126 2.4248 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 2.0470 -0.9353 -0.0004 33 1 4.0426 1.0618 1.0230 34 1 4.0421 0.3103 -0.5904 35 1 4.0421 2.0834 -0.4346 36 1 -0.7059 4.1583 1.4366 37 1 0.4555 4.7584 0.2261 38 1 0.5037 6.0604 2.3899 39 1 2.0677 5.3159 1.9784 40 1 2.5880 5.3957 4.5217 41 1 0.9975 6.1876 4.6274 42 1 -0.6640 5.4313 6.2216 43 1 -1.0888 4.3035 8.3674 44 1 -0.0049 0.6640 12.6122 45 1 2.7327 2.4011 8.1134 46 1 3.1438 3.5258 5.9634 47 1 2.8162 3.3658 3.1428 48 1 1.8132 2.6486 4.4271 49 1 0.1603 1.9017 2.7840 50 1 1.7711 1.3369 2.2674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261280233.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:44 Heat of formation + Delta-G solvation = -11.596933 kcal Electronic energy + Delta-G solvation = -29991.870626 eV Core-core repulsion = 25985.258355 eV Total energy + Delta-G solvation = -4006.612271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.58543 -39.24638 -38.22849 -36.55962 -35.67361 -34.48869 -32.34849 -31.40580 -30.53577 -30.24302 -30.19251 -27.54740 -25.61638 -25.10686 -24.13110 -23.93474 -22.52744 -21.93363 -20.50239 -20.33878 -18.43196 -18.01105 -16.98337 -16.90989 -15.96141 -15.80901 -15.36414 -15.20199 -15.14806 -14.71441 -14.55882 -14.35039 -14.18275 -13.97276 -13.78814 -13.58313 -13.42291 -13.20548 -12.98625 -12.82973 -12.74769 -12.60374 -12.26709 -12.06242 -11.90777 -11.84793 -11.68060 -11.59038 -11.47803 -11.33889 -11.22241 -10.78611 -10.64341 -10.58901 -10.44933 -10.03441 -9.36938 -9.21389 -8.97063 -8.87535 -8.33779 -8.19552 -7.21726 -6.48794 -4.07667 1.46891 2.17381 2.22730 2.36799 2.82027 3.08841 3.10525 3.16027 3.85891 3.93273 4.21068 4.53706 4.56779 4.73727 4.79147 4.86948 4.95603 5.03695 5.06698 5.11058 5.12974 5.21993 5.25688 5.29512 5.34538 5.36221 5.39060 5.42399 5.54335 5.59674 5.63980 5.67042 5.68747 5.71736 5.79346 5.86013 5.87288 6.07269 6.17644 6.24465 6.27552 6.38506 6.66604 6.84543 6.92136 6.95396 7.07653 7.18755 7.23319 7.35105 7.40802 7.78881 7.91466 7.96194 8.96974 9.67241 10.69286 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012694 B = 0.002460 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.311985 B =11380.162895 C =12702.589173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C -0.170 4.170 4 C -0.103 4.103 5 C 0.562 3.438 6 O -0.544 6.544 7 N -0.606 5.606 8 C 0.117 3.883 9 C 0.041 3.959 10 N -0.531 5.531 11 C 0.115 3.885 12 C -0.181 4.181 13 C -0.051 4.051 14 C -0.194 4.194 15 C 0.156 3.844 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.940 3.060 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.234 4.234 26 C -0.067 4.067 27 C 0.039 3.961 28 C 0.113 3.887 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.270 0.730 45 H 0.126 0.874 46 H 0.102 0.898 47 H 0.034 0.966 48 H 0.101 0.899 49 H 0.080 0.920 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.083 1.285 -20.417 20.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 C -0.173 4.173 4 C -0.160 4.160 5 C 0.350 3.650 6 O -0.422 6.422 7 N -0.339 5.339 8 C -0.006 4.006 9 C -0.087 4.087 10 N -0.256 5.256 11 C -0.012 4.012 12 C -0.182 4.182 13 C -0.070 4.070 14 C -0.213 4.213 15 C 0.102 3.898 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.253 4.253 26 C -0.086 4.086 27 C -0.090 4.090 28 C -0.010 4.010 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.120 0.880 47 H 0.052 0.948 48 H 0.119 0.881 49 H 0.098 0.902 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.199 1.410 -20.489 20.785 hybrid contribution 1.539 -0.502 0.267 1.641 sum 4.738 0.908 -20.222 20.789 Atomic orbital electron populations 1.21003 0.92613 1.03098 1.02739 1.23344 0.96448 0.96819 0.96689 1.21438 0.97005 0.92950 1.05905 1.20658 0.89669 1.03158 1.02556 1.18554 0.78066 0.85088 0.83245 1.90789 1.58180 1.62116 1.31094 1.48224 1.59013 1.19283 1.07407 1.21708 0.97052 0.82405 0.99434 1.22473 0.99465 0.97159 0.89629 1.61999 1.54768 1.05436 1.03386 1.20789 0.97256 0.95005 0.88111 1.19034 0.96908 1.05188 0.97062 1.20445 0.95498 0.97620 0.93445 1.20227 0.99825 1.03178 0.98082 1.19400 0.92592 0.91698 0.86071 1.83981 1.46658 1.48543 1.28922 1.21362 0.99903 1.15669 1.09837 0.89045 1.25290 0.97628 0.97977 0.95623 1.70043 1.24269 1.39310 1.16044 0.85658 0.79404 0.79503 0.78925 1.19111 1.20145 1.20113 1.21113 0.99323 1.06966 0.97941 1.20578 0.97366 0.95655 0.94960 1.22547 0.94360 0.91685 1.00408 1.21910 1.02151 0.94507 0.82430 0.91006 0.91143 0.91217 0.85643 0.90849 0.90910 0.91655 0.90575 0.88948 0.89461 0.94733 0.94970 0.90639 0.87092 0.86590 0.92039 0.85667 0.88014 0.94816 0.88121 0.90208 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.16 36.01 0.33 -0.80 16 2 C -0.11 -0.93 9.58 -36.13 -0.35 -1.28 16 3 C -0.17 -1.64 3.92 -102.85 -0.40 -2.04 16 4 C -0.10 -0.80 10.02 36.01 0.36 -0.44 16 5 C 0.56 6.82 5.91 -12.67 -0.07 6.74 16 6 O -0.54 -8.47 16.59 5.27 0.09 -8.38 16 7 N -0.61 -6.58 3.01 -173.85 -0.52 -7.10 16 8 C 0.12 1.20 6.58 -3.60 -0.02 1.18 16 9 C 0.04 0.41 5.62 -3.70 -0.02 0.39 16 10 N -0.53 -6.18 4.62 -235.77 -1.09 -7.27 16 11 C 0.11 1.42 5.12 -4.98 -0.03 1.40 16 12 C -0.18 -2.83 4.89 -104.58 -0.51 -3.34 16 13 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 14 C -0.19 -3.94 9.99 -39.40 -0.39 -4.33 16 15 C 0.16 3.64 6.65 -39.11 -0.26 3.38 16 16 O -0.18 -4.95 9.76 0.06 0.00 -4.95 16 17 C -0.39 -10.66 9.49 30.89 0.29 -10.37 16 18 H 0.09 2.30 5.21 -52.49 -0.27 2.02 16 19 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16 21 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 C -0.23 -4.81 9.17 -39.39 -0.36 -5.17 16 26 C -0.07 -1.12 7.85 -39.61 -0.31 -1.44 16 27 C 0.04 0.43 5.34 -3.70 -0.02 0.41 16 28 C 0.11 1.13 5.79 -3.60 -0.02 1.11 16 29 H 0.07 0.62 7.38 -51.93 -0.38 0.24 16 30 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 35 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.00 7.10 -51.93 -0.37 0.63 16 38 H 0.09 0.75 7.99 -51.93 -0.41 0.33 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.03 0.39 8.07 -51.93 -0.42 -0.03 16 41 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 42 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 43 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 46 H 0.10 1.47 7.93 -52.49 -0.42 1.05 16 47 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.10 1.28 5.65 -51.93 -0.29 0.99 16 49 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.09 0.78 6.13 -51.93 -0.32 0.46 16 LS Contribution 403.38 15.07 6.08 6.08 Total: -1.00 -31.81 403.38 -9.77 -41.58 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.79 Total: 4.04 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -2.27 Total: -14.88 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.85 Total: -38.49 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.09 Total: -13.33 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.81 -9.77 -41.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261280233.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.982 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds