Wall clock time and date at job start Wed Apr 1 2020 03:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00281 * 2 1 4 4 C 1.52995 * 109.47519 * 124.99756 * 3 2 1 5 5 C 1.50703 * 109.47297 * 179.97438 * 4 3 2 6 6 O 1.21274 * 119.99707 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99641 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99546 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.27602 * 327.09137 * 8 7 5 10 10 C 1.54594 * 110.31063 * 89.28365 * 8 7 5 11 11 C 1.54942 * 102.92403 * 140.87316 * 10 8 7 12 12 N 1.48537 * 103.22302 * 322.58415 * 11 10 8 13 13 C 1.46900 * 110.99475 * 159.72159 * 12 11 10 14 14 C 1.50698 * 109.47360 * 52.60389 * 13 12 11 15 15 C 1.38297 * 119.92955 * 89.99891 * 14 13 12 16 16 C 1.38095 * 120.07045 * 179.97438 * 15 14 13 17 17 C 1.38880 * 119.93329 * 0.02562 * 16 15 14 18 18 O 1.35747 * 120.07665 * 180.02562 * 17 16 15 19 19 C 1.34831 * 116.99336 * 5.53207 * 18 17 16 20 20 H 1.07999 * 120.00433 * 354.94914 * 19 18 17 21 21 C 1.38659 * 119.99510 * 174.94088 * 19 18 17 22 22 N 1.31553 * 120.00471 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99847 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47160 * 180.02562 * 23 21 19 25 25 H 1.48506 * 109.46871 * 300.00279 * 23 21 19 26 26 H 1.48500 * 109.47284 * 60.00125 * 23 21 19 27 27 C 1.38884 * 119.85707 * 0.27286 * 17 16 15 28 28 C 1.38101 * 119.92960 * 359.40508 * 27 17 16 29 29 C 1.47904 * 105.82042 * 39.20966 * 12 11 10 30 30 H 1.08004 * 119.99605 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00132 * 180.02562 * 1 2 3 32 32 H 1.08006 * 119.99633 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47252 * 4.99444 * 3 2 1 34 34 H 1.08998 * 109.46857 * 245.00000 * 3 2 1 35 35 H 1.09006 * 109.46851 * 60.00305 * 4 3 2 36 36 H 1.08997 * 109.47215 * 300.00553 * 4 3 2 37 37 H 0.97000 * 119.99954 * 0.02562 * 7 5 4 38 38 H 1.09003 * 110.72640 * 259.23224 * 10 8 7 39 39 H 1.09004 * 110.72516 * 22.33659 * 10 8 7 40 40 H 1.08998 * 110.66511 * 204.15152 * 11 10 8 41 41 H 1.08991 * 110.66705 * 81.01848 * 11 10 8 42 42 H 1.09003 * 109.47212 * 292.60329 * 13 12 11 43 43 H 1.09002 * 109.46870 * 172.60478 * 13 12 11 44 44 H 1.08003 * 119.96594 * 0.02562 * 15 14 13 45 45 H 1.08001 * 120.03823 * 180.02562 * 16 15 14 46 46 H 0.97006 * 119.99673 * 359.97438 * 22 21 19 47 47 H 1.07995 * 120.03547 * 179.72775 * 27 17 16 48 48 H 1.08005 * 119.96532 * 180.31423 * 28 27 17 49 49 H 1.09001 * 109.91755 * 94.01926 * 29 12 11 50 50 H 1.08997 * 109.91693 * 215.31330 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7890 2.6379 1.1812 6 8 3.5705 3.4642 0.3208 7 7 4.7062 2.8865 2.1370 8 6 5.4387 4.1552 2.1369 9 1 5.5948 4.5011 1.1151 10 6 4.6700 5.2187 2.9541 11 6 5.8032 5.9721 3.6951 12 7 6.7654 4.8919 4.0323 13 6 8.1007 5.4417 4.3017 14 6 7.9957 6.5316 5.3371 15 6 8.1059 6.2204 6.6801 16 6 8.0107 7.2169 7.6314 17 6 7.8035 8.5327 7.2383 18 8 7.7099 9.5147 8.1709 19 6 7.9407 9.1654 9.4526 20 1 8.1065 8.1293 9.7085 21 6 7.9654 10.1365 10.4420 22 7 7.7632 11.3985 10.1304 23 14 8.2859 9.6528 12.2176 24 1 8.2603 10.8660 13.0735 25 1 7.2350 8.7061 12.6701 26 1 9.6165 9.0015 12.3209 27 6 7.6870 8.8411 5.8891 28 6 7.7898 7.8410 4.9424 29 6 6.7895 3.9925 2.8584 30 1 -0.5400 0.9354 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3587 2.1316 0.0895 34 1 2.6213 1.4025 -0.9314 35 1 3.7400 0.5065 1.0920 36 1 2.4773 1.2356 2.1129 37 1 4.8812 2.2254 2.8249 38 1 4.1259 5.8938 2.2935 39 1 3.9910 4.7443 3.6626 40 1 5.4227 6.4448 4.6006 41 1 6.2669 6.7098 3.0404 42 1 8.5166 5.8532 3.3820 43 1 8.7517 4.6499 4.6724 44 1 8.2675 5.1970 6.9853 45 1 8.0972 6.9734 8.6800 46 1 7.5971 11.6497 9.2082 47 1 7.5214 9.8627 5.5805 48 1 7.7044 8.0809 3.8928 49 1 7.6035 4.2750 2.1908 50 1 6.9143 2.9599 3.1843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267723256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:21 Heat of formation + Delta-G solvation = -24.921015 kcal Electronic energy + Delta-G solvation = -28562.995495 eV Core-core repulsion = 24555.805448 eV Total energy + Delta-G solvation = -4007.190047 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.40932 -39.40724 -38.59011 -36.73677 -35.78222 -34.60484 -32.48733 -31.81939 -30.89164 -30.27035 -29.34918 -28.07184 -25.45870 -24.77437 -24.22838 -22.15630 -21.43022 -21.08104 -20.67790 -20.27268 -20.20626 -18.41499 -17.44097 -16.87486 -16.71297 -16.23902 -15.76005 -15.41409 -15.18077 -15.02309 -14.50560 -14.09038 -14.03435 -13.96737 -13.93782 -13.72101 -13.60383 -13.12651 -12.97949 -12.75412 -12.65934 -12.55411 -12.38080 -11.95630 -11.75017 -11.51009 -11.45964 -11.42845 -11.22417 -11.04661 -10.99137 -10.75444 -10.67473 -10.30950 -10.28640 -10.16888 -9.74940 -9.42886 -9.35047 -8.80242 -8.47516 -8.26556 -7.28287 -6.79607 -4.08788 1.82949 2.12032 2.18045 2.33732 2.86850 3.22406 3.26894 3.43848 3.95898 4.09769 4.23967 4.37025 4.46175 4.56555 4.60211 4.67979 4.85383 4.87546 4.92082 5.03440 5.11361 5.12942 5.15576 5.17116 5.29571 5.31673 5.40884 5.45312 5.53488 5.55105 5.63525 5.72558 5.73560 5.76886 5.81265 5.94124 6.05134 6.11991 6.19154 6.25183 6.33140 6.33556 6.58426 6.74322 6.83320 6.93957 7.05096 7.19212 7.21009 7.31589 7.54095 7.69191 7.92326 8.37280 8.89220 9.57857 10.64261 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020668 B = 0.001613 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.447493 B =17350.483098 C =17821.407641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C -0.080 4.080 4 C -0.136 4.136 5 C 0.512 3.488 6 O -0.542 6.542 7 N -0.722 5.722 8 C 0.135 3.865 9 H 0.094 0.906 10 C -0.134 4.134 11 C 0.042 3.958 12 N -0.509 5.509 13 C 0.105 3.895 14 C -0.185 4.185 15 C -0.049 4.049 16 C -0.232 4.232 17 C 0.159 3.841 18 O -0.202 6.202 19 C -0.472 4.472 20 H 0.084 0.916 21 C 0.010 3.990 22 N -0.880 5.880 23 Si 1.095 2.905 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.281 1.281 27 C -0.196 4.196 28 C -0.067 4.067 29 C 0.028 3.972 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.403 0.597 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.109 0.891 45 H 0.127 0.873 46 H 0.282 0.718 47 H 0.114 0.886 48 H 0.107 0.893 49 H 0.054 0.946 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 -21.951 -17.188 28.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C -0.117 4.117 4 C -0.176 4.176 5 C 0.298 3.702 6 O -0.419 6.419 7 N -0.374 5.374 8 C 0.030 3.970 9 H 0.112 0.888 10 C -0.173 4.173 11 C -0.086 4.086 12 N -0.234 5.234 13 C -0.022 4.022 14 C -0.186 4.186 15 C -0.067 4.067 16 C -0.251 4.251 17 C 0.105 3.895 18 O -0.106 6.106 19 C -0.548 4.548 20 H 0.102 0.898 21 C -0.195 4.195 22 N -0.512 5.512 23 Si 0.919 3.081 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.215 4.215 28 C -0.085 4.085 29 C -0.101 4.101 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.238 0.762 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.127 0.873 45 H 0.145 0.855 46 H 0.092 0.908 47 H 0.132 0.868 48 H 0.125 0.875 49 H 0.072 0.928 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.949 -20.731 -15.778 26.963 hybrid contribution 0.275 -0.687 -1.865 2.006 sum -6.673 -21.418 -17.642 28.540 Atomic orbital electron populations 1.23909 0.96014 1.01985 1.00913 1.22963 0.96104 0.98300 1.00121 1.20499 0.97815 0.95491 0.97909 1.21633 0.99084 0.95500 1.01414 1.20766 0.79548 0.88963 0.80890 1.90710 1.65328 1.48336 1.37480 1.46157 1.40879 1.19687 1.30633 1.21844 0.90875 0.83975 1.00333 0.88824 1.22944 0.98053 0.97508 0.98828 1.23201 0.92250 0.93289 0.99860 1.64961 1.08294 1.15859 1.34246 1.20991 0.89439 0.95517 0.96286 1.19065 1.12465 0.93280 0.93762 1.20578 0.96476 0.97755 0.91932 1.21172 1.10984 0.92650 1.00278 1.19251 0.92587 0.88296 0.89325 1.83663 1.76798 1.33495 1.16664 1.22213 1.54796 0.97055 0.80729 0.89840 1.26546 0.95405 0.92559 1.05004 1.70577 1.40889 1.16654 1.23066 0.83112 0.76903 0.75996 0.72049 1.19767 1.20711 1.20714 1.20147 1.11676 0.99385 0.90328 1.20489 0.98435 0.92048 0.97561 1.23149 0.95647 0.99317 0.91975 0.88472 0.88462 0.87323 0.90688 0.90238 0.88751 0.88672 0.76240 0.90688 0.90385 0.89191 0.93454 0.94626 0.90589 0.87339 0.85483 0.90810 0.86780 0.87462 0.92799 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.08 14.32 29.01 0.42 -0.67 16 2 C -0.16 -0.89 9.52 -36.03 -0.34 -1.24 16 3 C -0.08 -0.54 4.95 -27.89 -0.14 -0.68 16 4 C -0.14 -0.78 5.68 -27.88 -0.16 -0.94 16 5 C 0.51 4.62 7.83 -10.98 -0.09 4.53 16 6 O -0.54 -7.11 15.63 5.56 0.09 -7.02 16 7 N -0.72 -5.57 5.06 -52.49 -0.27 -5.84 16 8 C 0.14 1.27 3.34 -66.57 -0.22 1.05 16 9 H 0.09 1.00 7.56 -51.93 -0.39 0.60 16 10 C -0.13 -1.43 6.78 -24.87 -0.17 -1.60 16 11 C 0.04 0.51 4.97 -1.89 -0.01 0.50 16 12 N -0.51 -6.01 5.39 -231.88 -1.25 -7.26 16 13 C 0.10 1.33 5.18 -4.98 -0.03 1.31 16 14 C -0.18 -3.00 4.60 -104.58 -0.48 -3.48 16 15 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 16 C -0.23 -5.00 9.17 -39.40 -0.36 -5.37 16 17 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 18 O -0.20 -5.68 9.16 0.05 0.00 -5.68 16 19 C -0.47 -13.23 9.49 30.89 0.29 -12.94 16 20 H 0.08 2.20 5.20 -52.49 -0.27 1.92 16 21 C 0.01 0.29 5.49 -17.52 -0.10 0.19 16 22 N -0.88 -26.20 13.70 55.48 0.76 -25.44 16 23 Si 1.10 23.54 29.92 -169.99 -5.09 18.46 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 27 C -0.20 -4.03 9.99 -39.39 -0.39 -4.43 16 28 C -0.07 -1.14 8.33 -39.61 -0.33 -1.47 16 29 C 0.03 0.25 6.47 -2.75 -0.02 0.24 16 30 H 0.10 0.55 7.84 -52.48 -0.41 0.14 16 31 H 0.10 0.44 8.06 -52.49 -0.42 0.02 16 32 H 0.11 0.48 8.06 -52.48 -0.42 0.06 16 33 H 0.07 0.61 7.75 -51.93 -0.40 0.21 16 34 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.40 2.17 8.35 -40.82 -0.34 1.83 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 40 H 0.09 1.29 7.73 -51.93 -0.40 0.89 16 41 H 0.05 0.57 7.09 -51.93 -0.37 0.20 16 42 H 0.04 0.43 7.75 -51.93 -0.40 0.02 16 43 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 44 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 45 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 46 H 0.28 8.59 7.97 -40.82 -0.33 8.26 16 47 H 0.11 2.26 8.06 -52.49 -0.42 1.84 16 48 H 0.11 1.56 7.38 -52.48 -0.39 1.17 16 49 H 0.05 0.47 7.57 -51.93 -0.39 0.08 16 50 H 0.08 0.64 7.65 -51.93 -0.40 0.25 16 LS Contribution 409.00 15.07 6.16 6.16 Total: -1.00 -32.42 409.00 -10.16 -42.58 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.81 Total: 6.75 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -2.77 Total: -22.72 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: -0.76 Total: -38.54 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.09 Total: 18.46 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.42 -10.16 -42.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267723256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.662 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds