Wall clock time and date at job start Wed Apr 1 2020 05:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17396 * 179.97438 * 2 1 4 4 C 1.43205 * 179.97438 * 160.11355 * 3 2 1 5 5 O 1.21615 * 119.99932 * 354.29006 * 4 3 2 6 6 N 1.34775 * 120.00180 * 174.29338 * 4 3 2 7 7 C 1.47118 * 125.61122 * 0.02562 * 6 4 3 8 8 C 1.54544 * 107.32029 * 179.02989 * 7 6 4 9 9 C 1.53923 * 102.80710 * 338.92862 * 8 7 6 10 10 C 1.53062 * 111.27103 * 274.58821 * 9 8 7 11 11 C 1.55171 * 103.99362 * 260.24446 * 10 9 8 12 12 C 1.55003 * 102.91548 * 323.04229 * 11 10 9 13 13 C 1.53033 * 111.58675 * 154.24433 * 9 8 7 14 14 H 1.09004 * 110.17316 * 241.95523 * 13 9 8 15 15 C 1.50707 * 110.09346 * 3.57458 * 13 9 8 16 16 O 1.21286 * 119.99601 * 81.90107 * 15 13 9 17 17 N 1.34769 * 120.00289 * 261.89989 * 15 13 9 18 18 C 1.47067 * 136.05642 * 359.62705 * 17 15 13 19 19 C 1.53759 * 87.88957 * 152.96524 * 18 17 15 20 20 C 1.50694 * 114.26959 * 139.79017 * 19 18 17 21 21 H 1.07997 * 120.00317 * 266.48301 * 20 19 18 22 22 C 1.37882 * 119.99999 * 86.47331 * 20 19 18 23 23 N 1.31519 * 119.99663 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00120 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47061 * 90.00651 * 24 22 20 26 26 H 1.48505 * 109.46906 * 210.00545 * 24 22 20 27 27 H 1.48502 * 109.47038 * 330.00361 * 24 22 20 28 28 C 1.47071 * 136.06109 * 180.02562 * 17 15 13 29 29 C 1.47662 * 125.61924 * 180.02562 * 6 4 3 30 30 H 1.08999 * 109.46966 * 205.59218 * 1 2 3 31 31 H 1.08995 * 109.47440 * 325.59572 * 1 2 3 32 32 H 1.08998 * 109.46928 * 85.59989 * 1 2 3 33 33 H 1.09005 * 109.87605 * 298.46209 * 7 6 4 34 34 H 1.09002 * 109.87504 * 59.59460 * 7 6 4 35 35 H 1.08999 * 110.74955 * 220.59991 * 8 7 6 36 36 H 1.09002 * 110.74918 * 97.25688 * 8 7 6 37 37 H 1.09001 * 110.54946 * 141.58056 * 10 9 8 38 38 H 1.09000 * 110.54846 * 18.90963 * 10 9 8 39 39 H 1.09005 * 110.72843 * 81.39410 * 11 10 9 40 40 H 1.08999 * 110.73060 * 204.50809 * 11 10 9 41 41 H 1.09001 * 110.48613 * 155.96574 * 12 11 10 42 42 H 1.08998 * 110.47639 * 278.59392 * 12 11 10 43 43 H 1.09003 * 113.46944 * 267.70124 * 18 17 15 44 44 H 1.09006 * 113.46825 * 38.13953 * 18 17 15 45 45 H 1.08997 * 114.39262 * 272.67878 * 19 18 17 46 46 H 0.96996 * 119.99396 * 179.97438 * 23 22 20 47 47 H 1.08998 * 113.46160 * 321.86164 * 28 17 15 48 48 H 1.08997 * 113.46901 * 92.29986 * 28 17 15 49 49 H 1.09002 * 110.38389 * 84.02942 * 29 6 4 50 50 H 1.08998 * 110.38270 * 321.65908 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0018 -0.0002 5 8 4.6870 -1.0457 0.1045 6 7 4.7509 1.1637 -0.1164 7 6 4.1423 2.4965 -0.2490 8 6 5.2950 3.5230 -0.3268 9 6 6.4741 2.7604 0.3036 10 6 6.4718 2.8963 1.8282 11 6 7.5248 4.0012 2.1080 12 6 8.6148 3.7186 1.0429 13 6 7.8192 3.2807 -0.2082 14 1 8.3529 2.4891 -0.7342 15 6 7.6043 4.4578 -1.1244 16 8 7.4320 5.5647 -0.6594 17 7 7.6035 4.2806 -2.4604 18 6 7.7772 3.1445 -3.3780 19 6 6.9136 3.9078 -4.3958 20 6 7.3966 3.8039 -5.8194 21 1 8.0531 4.5603 -6.2235 22 6 7.0007 2.7429 -6.6060 23 7 6.2010 1.8220 -6.1140 24 14 7.6000 2.6137 -8.3706 25 1 8.8699 1.8449 -8.4069 26 1 6.5764 1.9179 -9.1912 27 1 7.8300 3.9755 -8.9162 28 6 7.4357 5.1394 -3.6425 29 6 6.2203 1.3088 -0.1315 30 1 -0.3633 -0.9268 0.4439 31 1 -0.3634 0.8478 0.5806 32 1 -0.3633 0.0788 -1.0246 33 1 3.5438 2.5418 -1.1589 34 1 3.5170 2.7064 0.6189 35 1 5.0577 4.4148 0.2533 36 1 5.5124 3.7818 -1.3631 37 1 6.7684 1.9578 2.2964 38 1 5.4888 3.2060 2.1832 39 1 7.0925 4.9914 1.9641 40 1 7.9304 3.9015 3.1148 41 1 9.1873 4.6223 0.8338 42 1 9.2741 2.9168 1.3754 43 1 8.8079 3.0028 -3.7032 44 1 7.3170 2.2234 -3.0204 45 1 5.8416 3.7410 -4.2912 46 1 5.9222 1.0759 -6.6675 47 1 6.6846 5.9180 -3.5101 48 1 8.3764 5.5232 -4.0373 49 1 6.6082 1.1400 -1.1361 50 1 6.6775 0.6154 0.5744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271094981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:48 Heat of formation + Delta-G solvation = 15.089180 kcal Electronic energy + Delta-G solvation = -31242.259254 eV Core-core repulsion = 27236.804180 eV Total energy + Delta-G solvation = -4005.455075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.10192 -39.50802 -38.42259 -36.94819 -35.43519 -34.34971 -32.73146 -31.26242 -30.18647 -29.51619 -28.71719 -28.37870 -25.59791 -25.00819 -24.86060 -23.13068 -21.86429 -21.12503 -20.23770 -19.31673 -18.38395 -17.42694 -16.91503 -16.67837 -16.20542 -15.93501 -15.37439 -15.18287 -14.91375 -14.76912 -14.53261 -14.22121 -14.11440 -13.93892 -13.69093 -13.55696 -13.19341 -12.96170 -12.67910 -12.36463 -12.25671 -12.08478 -11.84722 -11.58298 -11.34677 -11.30911 -11.10316 -11.02967 -10.97211 -10.86517 -10.73407 -10.63584 -10.56469 -10.48941 -10.41606 -10.38472 -10.19310 -9.57797 -9.25600 -8.97312 -8.70352 -8.60407 -7.90543 -6.21395 -4.27417 1.51687 2.16690 2.88915 3.10388 3.21706 3.29882 3.31812 3.48259 3.51842 3.95866 4.29909 4.36268 4.38686 4.40178 4.88597 5.00741 5.07942 5.10132 5.14745 5.17542 5.18716 5.21278 5.26221 5.29194 5.44433 5.50349 5.55682 5.60872 5.67207 5.75359 5.81424 5.89332 5.92030 5.97165 6.02381 6.07019 6.10985 6.14303 6.16200 6.25756 6.30923 6.37172 6.39426 6.52752 6.62045 6.77223 7.14853 7.36534 7.50033 7.75602 8.02383 8.13878 8.47280 8.72504 8.76676 9.39970 10.88009 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007754 B = 0.004107 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3610.249660 B = 6815.788399 C = 9398.125070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.088 4.088 3 C -0.221 4.221 4 C 0.648 3.352 5 O -0.527 6.527 6 N -0.602 5.602 7 C 0.104 3.896 8 C -0.125 4.125 9 C -0.058 4.058 10 C -0.106 4.106 11 C -0.119 4.119 12 C -0.104 4.104 13 C -0.095 4.095 14 H 0.092 0.908 15 C 0.545 3.455 16 O -0.561 6.561 17 N -0.644 5.644 18 C 0.096 3.904 19 C 0.038 3.962 20 C -0.519 4.519 21 H 0.063 0.937 22 C 0.070 3.930 23 N -0.884 5.884 24 Si 0.894 3.106 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.272 1.272 28 C 0.099 3.901 29 C 0.121 3.879 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.264 0.736 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.080 0.920 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.550 -0.045 14.825 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.090 4.090 3 C -0.223 4.223 4 C 0.438 3.562 5 O -0.405 6.405 6 N -0.335 5.335 7 C -0.019 4.019 8 C -0.163 4.163 9 C -0.059 4.059 10 C -0.144 4.144 11 C -0.157 4.157 12 C -0.141 4.141 13 C -0.116 4.116 14 H 0.110 0.890 15 C 0.334 3.666 16 O -0.441 6.441 17 N -0.377 5.377 18 C -0.026 4.026 19 C 0.019 3.981 20 C -0.557 4.557 21 H 0.081 0.919 22 C -0.134 4.134 23 N -0.520 5.520 24 Si 0.722 3.278 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.197 1.197 28 C -0.023 4.023 29 C -0.001 4.001 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.098 0.902 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.442 -0.237 15.299 16.240 hybrid contribution 0.335 -0.291 -1.145 1.228 sum -5.106 -0.529 14.154 15.056 Atomic orbital electron populations 1.19108 0.83516 1.03863 1.04147 1.22656 0.93808 0.98338 0.94233 1.20584 0.92391 1.03510 1.05855 1.14202 0.82501 0.82586 0.76955 1.90852 1.68768 1.30606 1.50301 1.48251 1.07678 1.06054 1.71541 1.22150 0.96560 0.81392 1.01800 1.22811 0.93014 0.97302 1.03148 1.21400 0.94075 0.94087 0.96340 1.22260 0.99805 0.99364 0.92949 1.22539 0.95752 0.99342 0.98037 1.22292 0.97302 1.01423 0.93130 1.21747 0.96315 0.97065 0.96521 0.88973 1.19753 0.76374 0.89554 0.80881 1.90628 1.51978 1.26225 1.75263 1.50138 1.68947 1.15554 1.03089 1.23693 1.01232 0.90006 0.87694 1.20351 0.96298 0.88600 0.92879 1.20897 1.30261 1.09034 0.95554 0.91870 1.25017 0.94319 0.95555 0.98493 1.69945 1.33318 1.11863 1.36903 0.86559 0.78586 0.78384 0.84316 1.20487 1.21125 1.19683 1.23336 0.99949 0.96785 0.82236 1.22343 0.79496 0.95710 1.02544 0.89330 0.89176 0.88901 0.90796 0.91372 0.89243 0.89065 0.91172 0.91296 0.90565 0.91645 0.90756 0.91071 0.90809 0.92348 0.91501 0.92596 0.92554 0.90971 0.90223 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.32 10.32 34.37 0.35 0.03 16 2 C -0.09 -1.02 14.13 -37.12 -0.52 -1.54 16 3 C -0.22 -3.21 12.78 -38.83 -0.50 -3.71 16 4 C 0.65 10.76 7.69 -14.33 -0.11 10.65 16 5 O -0.53 -10.34 17.36 5.26 0.09 -10.25 16 6 N -0.60 -8.88 3.34 -173.76 -0.58 -9.46 16 7 C 0.10 1.34 6.34 -2.89 -0.02 1.32 16 8 C -0.12 -1.73 4.71 -25.44 -0.12 -1.85 16 9 C -0.06 -0.75 0.75 -153.64 -0.12 -0.86 16 10 C -0.11 -1.18 5.83 -25.55 -0.15 -1.33 16 11 C -0.12 -1.33 6.85 -24.52 -0.17 -1.49 16 12 C -0.10 -1.26 6.08 -24.83 -0.15 -1.41 16 13 C -0.09 -1.33 2.89 -90.91 -0.26 -1.60 16 14 H 0.09 1.27 7.29 -51.93 -0.38 0.89 16 15 C 0.54 9.60 4.65 -10.99 -0.05 9.55 16 16 O -0.56 -11.20 16.75 5.55 0.09 -11.11 16 17 N -0.64 -12.14 3.19 -185.04 -0.59 -12.73 16 18 C 0.10 1.93 7.74 -8.37 -0.06 1.86 16 19 C 0.04 0.85 3.79 -91.11 -0.35 0.50 16 20 C -0.52 -12.89 8.83 -34.44 -0.30 -13.19 16 21 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.88 -23.77 13.26 55.43 0.74 -23.04 16 24 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 28 C 0.10 1.97 8.17 -8.50 -0.07 1.90 16 29 C 0.12 1.70 5.73 -3.06 -0.02 1.68 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.20 7.97 -51.93 -0.41 0.79 16 36 H 0.09 1.52 6.08 -51.93 -0.32 1.21 16 37 H 0.07 0.73 7.64 -51.93 -0.40 0.33 16 38 H 0.07 0.73 7.77 -51.93 -0.40 0.33 16 39 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.00 7.58 -51.93 -0.39 0.61 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 44 H 0.06 1.17 7.71 -51.93 -0.40 0.77 16 45 H 0.07 1.64 8.11 -51.93 -0.42 1.22 16 46 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 49 H 0.08 1.24 7.46 -51.93 -0.39 0.85 16 50 H 0.08 1.14 7.62 -51.93 -0.40 0.75 16 LS Contribution 408.28 15.07 6.15 6.15 Total: -1.00 -30.68 408.28 -9.92 -40.61 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.09 Total: 2.77 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.71 Total: 2.21 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.44 Total: -45.23 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: 0.18 Total: -21.36 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.68 -9.92 -40.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271094981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.694 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds